OSCA026109-RA (mRNA) Ostrinia scapulalis

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameOSCA026109-RA
Unique NameOSCA026109-RA
TypemRNA
OrganismOstrinia scapulalis (Adzuki bean borer)
Sequence length681
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
newscf_11009contignewscf_11009:5403..6083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly (v1.2) and Annotation (v1.2) of Ostrinia scapulalis2017-06-22
Properties
Property NameValue
eAED0.17
QI0|-1|0|1|-1|0|1|0|227
AED0.17
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
OSCA026109OSCA026109Ostrinia scapulalisgenenewscf_11009 5403..6083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
OSCA026109-RAOSCA026109-PAOstrinia scapulalispolypeptidenewscf_11009 5403..6083 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
OSCA026109-RA:exon:2333OSCA026109-RA:exon:2333Ostrinia scapulalisexonnewscf_11009 5403..6083 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
OSCA026109-RA:cdsOSCA026109-RA:cdsOstrinia scapulalisCDSnewscf_11009 5403..6083 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>OSCA026109-RA ID=OSCA026109-RA|Name=OSCA026109-RA|organism=Ostrinia scapulalis|type=mRNA|length=681bp
AGCTTAACACAAAAAGTACTCCAGTCGTGGGATGAAATTGGATTCAAAAC
TGTTGAAGATTTAAATTATAACAATGTCCTAGGATCTGGAATTTTCCGCG
TAACTGCTTTTAATGGACGCCGTGGAAGCACTGATCATGTGTACTTAAAT
CCAGCAAGAAGTAGGAAAAATTTGTTTGTTATTACAAATGCGCTTGTTAC
CAAAGTTCTTATTAACAGTAATACTTTAGAAGCAAATGGCGTTGAAGTGG
AACGCGATGGAAAGCTGATGAACGTTTTCGCAAAATCAAAAGTAATTTTG
TCCGCTGGTACTGTAAACACACCACAACTTCTAATGTTGTCTAGGATTGG
ACCAAAAGAACATTTGGAGTCGAAGAATATTCGGTGTTTAGTGAATTTGC
CTGCTGTCGGAAAATACCTTCAAGATCACTTAATGATCCCAGTAACCATA
TACGGTGATGGTGATAGTGAACCATCGCAGGCAGAAAAAAGTTTTGATTC
AGTTCAATATGTTTATAACAAAATGGGTTCTTTAGCACAAAATAGTTTAA
GTGACGTTGTATCATTTTATTCACGTAAACAAAGGGCTGGATATCCCGAA
TTTCAGAACCATCTTAAAATATTCCACAAGAACTCATCGGATTTGCAGGA
CTATTTGAATAAAACTGTGGGATATAAAGAA
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spliced messenger RNA

>OSCA026109-RA ID=OSCA026109-RA|Name=OSCA026109-RA|organism=Ostrinia scapulalis|type=mRNA|length=681bp|location=Sequence derived from alignment at newscf_11009:5403..6083+ (Ostrinia scapulalis)|Notes=Excludes all bases but those of type(s): exon.  
AGCTTAACACAAAAAGTACTCCAGTCGTGGGATGAAATTGGATTCAAAAC
TGTTGAAGATTTAAATTATAACAATGTCCTAGGATCTGGAATTTTCCGCG
TAACTGCTTTTAATGGACGCCGTGGAAGCACTGATCATGTGTACTTAAAT
CCAGCAAGAAGTAGGAAAAATTTGTTTGTTATTACAAATGCGCTTGTTAC
CAAAGTTCTTATTAACAGTAATACTTTAGAAGCAAATGGCGTTGAAGTGG
AACGCGATGGAAAGCTGATGAACGTTTTCGCAAAATCAAAAGTAATTTTG
TCCGCTGGTACTGTAAACACACCACAACTTCTAATGTTGTCTAGGATTGG
ACCAAAAGAACATTTGGAGTCGAAGAATATTCGGTGTTTAGTGAATTTGC
CTGCTGTCGGAAAATACCTTCAAGATCACTTAATGATCCCAGTAACCATA
TACGGTGATGGTGATAGTGAACCATCGCAGGCAGAAAAAAGTTTTGATTC
AGTTCAATATGTTTATAACAAAATGGGTTCTTTAGCACAAAATAGTTTAA
GTGACGTTGTATCATTTTATTCACGTAAACAAAGGGCTGGATATCCCGAA
TTTCAGAACCATCTTAAAATATTCCACAAGAACTCATCGGATTTGCAGGA
CTATTTGAATAAAACTGTGGGATATAAAGAA
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protein sequence of OSCA026109-RA

>OSCA026109-PA ID=OSCA026109-PA|Name=OSCA026109-RA|organism=Ostrinia scapulalis|type=polypeptide|length=227bp
SLTQKVLQSWDEIGFKTVEDLNYNNVLGSGIFRVTAFNGRRGSTDHVYLN
PARSRKNLFVITNALVTKVLINSNTLEANGVEVERDGKLMNVFAKSKVIL
SAGTVNTPQLLMLSRIGPKEHLESKNIRCLVNLPAVGKYLQDHLMIPVTI
YGDGDSEPSQAEKSFDSVQYVYNKMGSLAQNSLSDVVSFYSRKQRAGYPE
FQNHLKIFHKNSSDLQDYLNKTVGYKE
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mRNA from alignment at newscf_11009:5403..6083+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>OSCA026109-RA ID=OSCA026109-RA|Name=OSCA026109-RA|organism=Ostrinia scapulalis|type=mRNA|length=681bp|location=Sequence derived from alignment at newscf_11009:5403..6083+ (Ostrinia scapulalis)
AGCTTAACACAAAAAGTACTCCAGTCGTGGGATGAAATTGGATTCAAAAC TGTTGAAGATTTAAATTATAACAATGTCCTAGGATCTGGAATTTTCCGCG TAACTGCTTTTAATGGACGCCGTGGAAGCACTGATCATGTGTACTTAAAT CCAGCAAGAAGTAGGAAAAATTTGTTTGTTATTACAAATGCGCTTGTTAC CAAAGTTCTTATTAACAGTAATACTTTAGAAGCAAATGGCGTTGAAGTGG AACGCGATGGAAAGCTGATGAACGTTTTCGCAAAATCAAAAGTAATTTTG TCCGCTGGTACTGTAAACACACCACAACTTCTAATGTTGTCTAGGATTGG ACCAAAAGAACATTTGGAGTCGAAGAATATTCGGTGTTTAGTGAATTTGC CTGCTGTCGGAAAATACCTTCAAGATCACTTAATGATCCCAGTAACCATA TACGGTGATGGTGATAGTGAACCATCGCAGGCAGAAAAAAGTTTTGATTC AGTTCAATATGTTTATAACAAAATGGGTTCTTTAGCACAAAATAGTTTAA GTGACGTTGTATCATTTTATTCACGTAAACAAAGGGCTGGATATCCCGAA TTTCAGAACCATCTTAAAATATTCCACAAGAACTCATCGGATTTGCAGGA CTATTTGAATAAAACTGTGGGATATAAAGAA
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Coding sequence (CDS) from alignment at newscf_11009:5403..6083+

>OSCA026109-RA ID=OSCA026109-RA|Name=OSCA026109-RA|organism=Ostrinia scapulalis|type=CDS|length=681bp|location=Sequence derived from alignment at newscf_11009:5403..6083+ (Ostrinia scapulalis)
AGCTTAACACAAAAAGTACTCCAGTCGTGGGATGAAATTGGATTCAAAAC
TGTTGAAGATTTAAATTATAACAATGTCCTAGGATCTGGAATTTTCCGCG
TAACTGCTTTTAATGGACGCCGTGGAAGCACTGATCATGTGTACTTAAAT
CCAGCAAGAAGTAGGAAAAATTTGTTTGTTATTACAAATGCGCTTGTTAC
CAAAGTTCTTATTAACAGTAATACTTTAGAAGCAAATGGCGTTGAAGTGG
AACGCGATGGAAAGCTGATGAACGTTTTCGCAAAATCAAAAGTAATTTTG
TCCGCTGGTACTGTAAACACACCACAACTTCTAATGTTGTCTAGGATTGG
ACCAAAAGAACATTTGGAGTCGAAGAATATTCGGTGTTTAGTGAATTTGC
CTGCTGTCGGAAAATACCTTCAAGATCACTTAATGATCCCAGTAACCATA
TACGGTGATGGTGATAGTGAACCATCGCAGGCAGAAAAAAGTTTTGATTC
AGTTCAATATGTTTATAACAAAATGGGTTCTTTAGCACAAAATAGTTTAA
GTGACGTTGTATCATTTTATTCACGTAAACAAAGGGCTGGATATCCCGAA
TTTCAGAACCATCTTAAAATATTCCACAAGAACTCATCGGATTTGCAGGA
CTATTTGAATAAAACTGTGGGATATAAAGAA
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Synonyms
The feature 'OSCA026109-RA' has the following synonyms
Synonym
snap-newscf_11009-processed-gene-0.0-mRNA-1