Cotesia_glomerata008536-RA (mRNA) Cotesia glomerata

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Cotesia_glomerata008536-RA
Unique Name	Cotesia_glomerata008536-RA
Type	mRNA
Organism	Cotesia glomerata (Cotesia glomerata)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig106852	contig	Contig106852:6052..7665 + View in Apollo

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cotesia glomerata - OGS 1.0	2017-09-01

Properties


Property Name	Value
AED	0.13
QI	352\|0.75\|0.8\|1\|0.75\|0.6\|5\|110\|267
eAED	0.13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Cotesia_glomerata008536	Cotesia_glomerata008536	Cotesia glomerata	gene	Contig106852 6052..7665 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Cotesia_glomerata008536-RA	Cotesia_glomerata008536-PA	Cotesia glomerata	polypeptide	Contig106852 6404..7555 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Cotesia_glomerata008536-RA:exon:6475	Cotesia_glomerata008536-RA:exon:6475	Cotesia glomerata	exon	Contig106852 6052..6464 +
Cotesia_glomerata008536-RA:exon:6476	Cotesia_glomerata008536-RA:exon:6476	Cotesia glomerata	exon	Contig106852 6539..6729 +
Cotesia_glomerata008536-RA:exon:6477	Cotesia_glomerata008536-RA:exon:6477	Cotesia glomerata	exon	Contig106852 6798..6878 +
Cotesia_glomerata008536-RA:exon:6478	Cotesia_glomerata008536-RA:exon:6478	Cotesia glomerata	exon	Contig106852 6959..7100 +
Cotesia_glomerata008536-RA:exon:6479	Cotesia_glomerata008536-RA:exon:6479	Cotesia glomerata	exon	Contig106852 7227..7665 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Cotesia_glomerata008536-RA:five_prime_utr	Cotesia_glomerata008536-RA:five_prime_utr	Cotesia glomerata	five_prime_UTR	Contig106852 6052..6403 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Cotesia_glomerata008536-RA:cds	Cotesia_glomerata008536-RA:cds	Cotesia glomerata	CDS	Contig106852 6404..6464 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Cotesia_glomerata008536-RA:three_prime_utr	Cotesia_glomerata008536-RA:three_prime_utr	Cotesia glomerata	three_prime_UTR	Contig106852 7556..7665 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig106852:6052..7665+
coding sequence from alignment at Contig106852:6052..7665+

spliced messenger RNA

>Cotesia_glomerata008536-RA ID=Cotesia_glomerata008536-RA|Name=Cotesia_glomerata008536-RA|organism=Cotesia glomerata|type=mRNA|length=1266bp|location=Sequence derived from alignment at Contig106852:6052..7665+ (Cotesia glomerata)|Notes=Excludes all bases but those of type(s): exon.  
ATTTCACGGTAGTTGTGTGAACCGGAGGGTGTCTCTCTTTCTTATTTAAA
AGATTAGTACTAGATGTAATGCTAATTTTTTTTTCTTAATTAATTATAAA
ATATATTTAATAATTTCAAACGATATCAAACAATCGACAAATAAAATTTT
TTCAAACGAAATCAAACAATCAACGAATAAAATATTCAGTTTAGTTTTAC
TTCTCATAACACTTATGTTCAAAGTCACAAGTTATTACGATTATTATAAA
CAACATAAAATACTTTAAATTTGACTGAAAAAAAACGTATGACATACTCA
ACGCTCGTATTTCTGAGTTTTAAAGCGATACTTTCGTCAGTGACTAAAAA
GTATGGCAACAATTATTAGATCTCTTGTAAGATTATATCATTATATTAAT
GATGAAGTATCAGATCCAAGGACGAAGGATTGGTTTTTAATGTCTTCACC
ATGGCCAGGTGTTGCAATACTTGCATTTTATTTATACTTCGTATTCACTT
TAGGGCCAAGACTTATGGCAAACAGGCCGCCAATGAAGTTAGATAGAATA
ATGCAGATTTATAATGTTATTCAAATATATTTAAGTGGCTATCTTGTGTA
TAAGGCTTTATCCCTTGCGTGGCTTAATGAATATAGTTTTGTTTGTCAAC
CAGTTGATTATTCAAACTCTCCGCGAGCAGTGGAGATTGCGGGAGCTGTG
TGGTTGTATTTTATGGTTAAATTATTTGATTTGATGGACACAGTGTTTTT
TGTTTTAAGAAAAAAACAAAATCAAGTATCTTTTCTTCACGTTTATCATC
ACGCCGGAATGGTAATGGGCGGGTGGGGTTTAGTCAACTCTTTTGTACAT
GTCATTATGTATAGTCATTATTTAGCTACATCATTAAAAATAAGTAAGCC
CTGGTGGAAGAAATACATCACTCAACTTCAACTCACTCAATTTTTTCTAC
TTCTGATTCACTTTTCTCAATTAATCTGGACAAAAGATTGTGGTTTTCCT
CTCTGGCCTGCGGCAATATTTATACCACAAAACCTTTTCATGATGGTGTT
ATTTGGAGATTTCTACTACAAAGCGTATATAAAAAAACCAACGCCAAAAA
CGAATCAAAATGGTATTACGCAAAATATAGCTAATGGAAGTACAAAAAGC
CAATAACGATGATAATAATAAAACAGATCACATAGTTCTTTTACGTCAAG
CCGATTTTTGATCGTTTTAAGTTTAAGAACATACTTTAAAATAAATTAAT
AATAATAATAATAACA

protein sequence of Cotesia_glomerata008536-RA

>Cotesia_glomerata008536-PA ID=Cotesia_glomerata008536-PA|Name=Cotesia_glomerata008536-RA|organism=Cotesia glomerata|type=polypeptide|length=268bp
MATIIRSLVRLYHYINDEVSDPRTKDWFLMSSPWPGVAILAFYLYFVFTL
GPRLMANRPPMKLDRIMQIYNVIQIYLSGYLVYKALSLAWLNEYSFVCQP
VDYSNSPRAVEIAGAVWLYFMVKLFDLMDTVFFVLRKKQNQVSFLHVYHH
AGMVMGGWGLVNSFVHVIMYSHYLATSLKISKPWWKKYITQLQLTQFFLL
LIHFSQLIWTKDCGFPLWPAAIFIPQNLFMMVLFGDFYYKAYIKKPTPKT
NQNGITQNIANGSTKSQ.

mRNA from alignment at Contig106852:6052..7665+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Cotesia_glomerata008536-RA ID=Cotesia_glomerata008536-RA|Name=Cotesia_glomerata008536-RA|organism=Cotesia glomerata|type=mRNA|length=1614bp|location=Sequence derived from alignment at Contig106852:6052..7665+ (Cotesia glomerata)
ATTTCACGGTAGTTGTGTGAACCGGAGGGTGTCTCTCTTTCTTATTTAAA
AGATTAGTACTAGATGTAATGCTAATTTTTTTTTCTTAATTAATTATAAA
ATATATTTAATAATTTCAAACGATATCAAACAATCGACAAATAAAATTTT
TTCAAACGAAATCAAACAATCAACGAATAAAATATTCAGTTTAGTTTTAC
TTCTCATAACACTTATGTTCAAAGTCACAAGTTATTACGATTATTATAAA
CAACATAAAATACTTTAAATTTGACTGAAAAAAAACGTATGACATACTCA
ACGCTCGTATTTCTGAGTTTTAAAGCGATACTTTCGTCAGTGACTAAAAA
GTATGGCAACAATTATTAGATCTCTTGTAAGATTATATCATTATATTAAT
GATGAAGTATCAGGTAACTACAATTTGTTTTTAAATATTAATTTAATATT
CGTGGAAATTACAACATTACTTATCTTATATATAAAGATCCAAGGACGAA
GGATTGGTTTTTAATGTCTTCACCATGGCCAGGTGTTGCAATACTTGCAT
TTTATTTATACTTCGTATTCACTTTAGGGCCAAGACTTATGGCAAACAGG
CCGCCAATGAAGTTAGATAGAATAATGCAGATTTATAATGTTATTCAAAT
ATATTTAAGTGGCTATCTTGTGTATAAGGTAATTTAATTAACAACTGACA
AGTTTACTGTGTAGATTAATGTAACAAAAAAATTGTTGTTTTTTAGGCTT
TATCCCTTGCGTGGCTTAATGAATATAGTTTTGTTTGTCAACCAGTTGAT
TATTCAAACTCTCCGCGAGCAGTGGAGGTAATTTTTTATTTTTGTGCTTG
CATATTAAAACATTTCAATATTTTAATTATTTATCATAATAATTTACAAT
TATTTAGATTGCGGGAGCTGTGTGGTTGTATTTTATGGTTAAATTATTTG
ATTTGATGGACACAGTGTTTTTTGTTTTAAGAAAAAAACAAAATCAAGTA
TCTTTTCTTCACGTTTATCATCACGCCGGAATGGTAATGGGCGGGTGGGG
TGGAGTTAAATTTTTACCAGGCGGCCATGTCACATTTTTAGGCAAATAAA
ATTATATTTTTATTGAAATTTTAAAAATATTTTTTATCATACTAAACGAC
TGAATTTTAATGTTTTTCGTTTCAGGTTTAGTCAACTCTTTTGTACATGT
CATTATGTATAGTCATTATTTAGCTACATCATTAAAAATAAGTAAGCCCT
GGTGGAAGAAATACATCACTCAACTTCAACTCACTCAATTTTTTCTACTT
CTGATTCACTTTTCTCAATTAATCTGGACAAAAGATTGTGGTTTTCCTCT
CTGGCCTGCGGCAATATTTATACCACAAAACCTTTTCATGATGGTGTTAT
TTGGAGATTTCTACTACAAAGCGTATATAAAAAAACCAACGCCAAAAACG
AATCAAAATGGTATTACGCAAAATATAGCTAATGGAAGTACAAAAAGCCA
ATAACGATGATAATAATAAAACAGATCACATAGTTCTTTTACGTCAAGCC
GATTTTTGATCGTTTTAAGTTTAAGAACATACTTTAAAATAAATTAATAA
TAATAATAATAACA

Coding sequence (CDS) from alignment at Contig106852:6052..7665+

>Cotesia_glomerata008536-RA ID=Cotesia_glomerata008536-RA|Name=Cotesia_glomerata008536-RA|organism=Cotesia glomerata|type=CDS|length=804bp|location=Sequence derived from alignment at Contig106852:6052..7665+ (Cotesia glomerata)
ATGGCAACAATTATTAGATCTCTTGTAAGATTATATCATTATATTAATGA
TGAAGTATCAGATCCAAGGACGAAGGATTGGTTTTTAATGTCTTCACCAT
GGCCAGGTGTTGCAATACTTGCATTTTATTTATACTTCGTATTCACTTTA
GGGCCAAGACTTATGGCAAACAGGCCGCCAATGAAGTTAGATAGAATAAT
GCAGATTTATAATGTTATTCAAATATATTTAAGTGGCTATCTTGTGTATA
AGGCTTTATCCCTTGCGTGGCTTAATGAATATAGTTTTGTTTGTCAACCA
GTTGATTATTCAAACTCTCCGCGAGCAGTGGAGATTGCGGGAGCTGTGTG
GTTGTATTTTATGGTTAAATTATTTGATTTGATGGACACAGTGTTTTTTG
TTTTAAGAAAAAAACAAAATCAAGTATCTTTTCTTCACGTTTATCATCAC
GCCGGAATGGTAATGGGCGGGTGGGGTTTAGTCAACTCTTTTGTACATGT
CATTATGTATAGTCATTATTTAGCTACATCATTAAAAATAAGTAAGCCCT
GGTGGAAGAAATACATCACTCAACTTCAACTCACTCAATTTTTTCTACTT
CTGATTCACTTTTCTCAATTAATCTGGACAAAAGATTGTGGTTTTCCTCT
CTGGCCTGCGGCAATATTTATACCACAAAACCTTTTCATGATGGTGTTAT
TTGGAGATTTCTACTACAAAGCGTATATAAAAAAACCAACGCCAAAAACG
AATCAAAATGGTATTACGCAAAATATAGCTAATGGAAGTACAAAAAGCCA
ATAA

Synonyms

The feature 'Cotesia_glomerata008536-RA' has the following synonyms


Synonym
maker-Contig106852-snap-gene-0.8-mRNA-1