Cotesia_glomerata019429-RA (mRNA) Cotesia glomerata

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Cotesia_glomerata019429-RA
Unique Name	Cotesia_glomerata019429-RA
Type	mRNA
Organism	Cotesia glomerata (Cotesia glomerata)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig38783	contig	Contig38783:51..2494 + View in Apollo

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cotesia glomerata - OGS 1.0	2017-09-01

Properties


Property Name	Value
AED	0.16
QI	0\|0\|0\|1\|0\|0\|3\|0\|172
eAED	0.16

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Cotesia_glomerata019429	Cotesia_glomerata019429	Cotesia glomerata	gene	Contig38783 51..2494 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Cotesia_glomerata019429-RA	Cotesia_glomerata019429-PA	Cotesia glomerata	polypeptide	Contig38783 51..2494 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Cotesia_glomerata019429-RA:exon:4254	Cotesia_glomerata019429-RA:exon:4254	Cotesia glomerata	exon	Contig38783 51..317 +
Cotesia_glomerata019429-RA:exon:4255	Cotesia_glomerata019429-RA:exon:4255	Cotesia glomerata	exon	Contig38783 1910..2002 +
Cotesia_glomerata019429-RA:exon:4256	Cotesia_glomerata019429-RA:exon:4256	Cotesia glomerata	exon	Contig38783 2339..2494 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Cotesia_glomerata019429-RA:cds	Cotesia_glomerata019429-RA:cds	Cotesia glomerata	CDS	Contig38783 51..317 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig38783:51..2494+
coding sequence from alignment at Contig38783:51..2494+

spliced messenger RNA

>Cotesia_glomerata019429-RA ID=Cotesia_glomerata019429-RA|Name=Cotesia_glomerata019429-RA|organism=Cotesia glomerata|type=mRNA|length=516bp|location=Sequence derived from alignment at Contig38783:51..2494+ (Cotesia glomerata)|Notes=Excludes all bases but those of type(s): exon.  
TCAGTAGCCAGGAAGTCGTTCATCACACCGACTTTAGATAAAGATATAAA
ACCAACACTAGAGGCGAGTGTCCCTGATGAATGGCTTTACGGTGAGAAGC
TTAATGAGAAAGTTAAAGATGCGAAGGCAATAGTGAAAGCTGCTTCAACA
TTGAAGACCGCAGAAAAACCAGCAGCTAAAAAACAAGCTACTAGGAACCT
CTCCCAGGGAAACTTCAGAGGCCCACCTGCGAGATTCAGGCAGGTGGGCA
CTTACCAGAGGAGATTTTGGGAACTATCTCCTGTAGCTTTTCAAAAAATT
CTAAAAGTTTTGGGATCACCGTCTATTGACCTTTTTGCCTCACGCATTAA
TAAAAAATGTGCCTTCGTCATCAAAGGCATCAAGGAAGAATCAATAAATA
TAATGCTGAGTTCGTTGACGGAGTCAACGGTCAAACAATACGAAGGGCCT
TTAAAAAGATGGCTCGTATTTGCTCAAGAAAATAAAATTGATGCCTTTGA
ACCAGCAAGCACTGAA

protein sequence of Cotesia_glomerata019429-RA

>Cotesia_glomerata019429-PA ID=Cotesia_glomerata019429-PA|Name=Cotesia_glomerata019429-RA|organism=Cotesia glomerata|type=polypeptide|length=172bp
SVARKSFITPTLDKDIKPTLEASVPDEWLYGEKLNEKVKDAKAIVKAAST
LKTAEKPAAKKQATRNLSQGNFRGPPARFRQVGTYQRRFWELSPVAFQKI
LKVLGSPSIDLFASRINKKCAFVIKGIKEESINIMLSSLTESTVKQYEGP
LKRWLVFAQENKIDAFEPASTE

mRNA from alignment at Contig38783:51..2494+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Cotesia_glomerata019429-RA ID=Cotesia_glomerata019429-RA|Name=Cotesia_glomerata019429-RA|organism=Cotesia glomerata|type=mRNA|length=2444bp|location=Sequence derived from alignment at Contig38783:51..2494+ (Cotesia glomerata)
TCAGTAGCCAGGAAGTCGTTCATCACACCGACTTTAGATAAAGATATAAA
ACCAACACTAGAGGCGAGTGTCCCTGATGAATGGCTTTACGGTGAGAAGC
TTAATGAGAAAGTTAAAGATGCGAAGGCAATAGTGAAAGCTGCTTCAACA
TTGAAGACCGCAGAAAAACCAGCAGCTAAAAAACAAGCTACTAGGAACCT
CTCCCAGGGAAACTTCAGAGGCCCACCTGCGAGATTCAGGCAGGTGGGCA
CTTACCAGAGGAGATTTGTTACGAACCCGAAATACAGGCAGAGACACACT
GCGACAGCGGGAACGGCGAAAACAGCTCAGAAGACGACCACGGAGAAGAG
CGCGAAGTAATTTTGGCTTCTGAAAAGGAACCACAGGAGGTAAATATGTT
AGCAGGAAGACTTAGTTTGTTCACTGAGCATTGGGAAGGTATTTCCGATG
ATgaattcattattgactggatcagaggctacgatattccctttaagaca
cgtcctactcaacttattgagcctagagaaCCTACATGGTCTCCTAGTGA
TGATCTAAGAGTCCAAAGGGCGATCGATAAGCTTTTACGGAAAAAAGCTA
TTGAAGTCTGTACGGATTCCGATGATCAATTCGTTTCCACGTATTTTTTA
GTCCCAAAACCGGACGGTTCGGATCGTTTTATTATTAACTTAAAGAAATT
GAATGATTATATAGAAACAGAGCACTTCAAAATGGAAGATCTGAGATCAG
CGAGACATCTTATTGATAGGGGGGCATTTATGGCTAATTTAGATTTAGAG
GACGCGTACTTGTTAGTTCGGGTGAATTACATTAGTAGGAAATATCTTAG
ATTCAGGTTCAGAGGTCAACTTTATCAGTTCAGGTGTTTACCGTTCGGCC
TGTGCTCCAGTCCTTATACTTTTACTAAGATAATGAAACCGGTGGTCAAC
ATGCTTAGATCAAAGGGTCTTTTGTCTGTCGTTTATCTAGATGATTTTCT
ATGCATAGGTAACAGTTATAAAAGTTGTAAGAGCAATGTACAGACAACAA
TTAAATTACTAGAGAGTCTAGGATTTATTATAAATTATAATAAAAGTTCG
ACGACTCCTAGCAAAAGATGTAAATANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGTTTTGAAGATATTAGGTGGTGGAAAGACAATATTATGTT
GGCCAGCAGTAGAATAAAGTCCCATAATTATAAGTTGGTGGTAACTTCGG
ATGCATCCAGAACAGGATGGGGTGCGGAGTCTAGTGGTGTAGTTACACAA
GGTTTCTGGAGTACACAGGACCAGAAATTTCATATTAACTATCTAGAGCT
ATTAGCGGCCTTTTTTGCACTAAAATGCTTTGCATCAGAGCTTTATGACT
GCGAAATTCTTCTACGTATAGACAATACGACAGCTATTGCCTATATTAAT
AAAACTGGTGGGATTAGGTACCCAGTACTCTCAGAGCTGGCAAGGAAGAT
TTGGCAATGGTGTGAAGTTAGAAAGATTTGGCCGGTTGCAACGTATATTC
CTTCAGcgttgaacgtggatgcagacgctgcttctagagtAAGAAACTTA
GATACTGAGTGGGAACTATCTCCTGTAGCTTTTCAAAAAATTCTAAAAGT
TTTGGGATCACCGTCTATTGACCTTTTTGCCTCACGCATTAATAAAAAAT
GTGTAAGATTCTGCTCTCGCTATCCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGCCTTCGTCATC
AAAGGCATCAAGGAAGAATCAATAAATATAATGCTGAGTTCGTTGACGGA
GTCAACGGTCAAACAATACGAAGGGCCTTTAAAAAGATGGCTCGTATTTG
CTCAAGAAAATAAAATTGATGCCTTTGAACCAGCAAGCACTGAA

Coding sequence (CDS) from alignment at Contig38783:51..2494+

>Cotesia_glomerata019429-RA ID=Cotesia_glomerata019429-RA|Name=Cotesia_glomerata019429-RA|organism=Cotesia glomerata|type=CDS|length=516bp|location=Sequence derived from alignment at Contig38783:51..2494+ (Cotesia glomerata)
TCAGTAGCCAGGAAGTCGTTCATCACACCGACTTTAGATAAAGATATAAA
ACCAACACTAGAGGCGAGTGTCCCTGATGAATGGCTTTACGGTGAGAAGC
TTAATGAGAAAGTTAAAGATGCGAAGGCAATAGTGAAAGCTGCTTCAACA
TTGAAGACCGCAGAAAAACCAGCAGCTAAAAAACAAGCTACTAGGAACCT
CTCCCAGGGAAACTTCAGAGGCCCACCTGCGAGATTCAGGCAGGTGGGCA
CTTACCAGAGGAGATTTTGGGAACTATCTCCTGTAGCTTTTCAAAAAATT
CTAAAAGTTTTGGGATCACCGTCTATTGACCTTTTTGCCTCACGCATTAA
TAAAAAATGTGCCTTCGTCATCAAAGGCATCAAGGAAGAATCAATAAATA
TAATGCTGAGTTCGTTGACGGAGTCAACGGTCAAACAATACGAAGGGCCT
TTAAAAAGATGGCTCGTATTTGCTCAAGAAAATAAAATTGATGCCTTTGA
ACCAGCAAGCACTGAA

Synonyms

The feature 'Cotesia_glomerata019429-RA' has the following synonyms


Synonym
maker-Contig38783-snap-gene-0.3-mRNA-1