Cotesia_glomerata023024-RA (mRNA) Cotesia glomerata

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Cotesia_glomerata023024-RA
Unique Name	Cotesia_glomerata023024-RA
Type	mRNA
Organism	Cotesia glomerata (Cotesia glomerata)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig4354	contig	Contig4354:9523..10773 - View in Apollo

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cotesia glomerata - OGS 1.0	2017-09-01

Properties


Property Name	Value
AED	0.08
QI	0\|-1\|0\|1\|-1\|1\|1\|0\|416
eAED	0.08

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Cotesia_glomerata023024	Cotesia_glomerata023024	Cotesia glomerata	gene	Contig4354 9523..10773 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Cotesia_glomerata023024-RA	Cotesia_glomerata023024-PA	Cotesia glomerata	polypeptide	Contig4354 9523..10773 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Cotesia_glomerata023024-RA:cds	Cotesia_glomerata023024-RA:cds	Cotesia glomerata	CDS	Contig4354 9523..10773 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Cotesia_glomerata023024-RA:exon:539	Cotesia_glomerata023024-RA:exon:539	Cotesia glomerata	exon	Contig4354 9523..10773 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig4354:9523..10773-
coding sequence from alignment at Contig4354:9523..10773-

spliced messenger RNA

>Cotesia_glomerata023024-RA ID=Cotesia_glomerata023024-RA|Name=Cotesia_glomerata023024-RA|organism=Cotesia glomerata|type=mRNA|length=1251bp|location=Sequence derived from alignment at Contig4354:9523..10773- (Cotesia glomerata)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCACGAAGCTGACATTCAAAATCTTACCCACCACCAAAACATAAC
AAATGCAATTATAACAACTATAGGTGAATCCATGTTGTTACACCAAGTGC
TATTGAGAGTACCTACTTTTGATGGCAGAAATATGCCTTTAAAATTATTC
TTAGAAGATGTCGAAAGTGCGGTAGAAGATTCCCCCGAAGCGCTCCATCC
CACTCTTCTGAAAACTATAAAAGCTAGATTAAAAGGCCTAGCCAGAGACG
CAATTCACGGTAAAGTTATTGTTACTTTCCCCCAATTAAAGGACGCTTTG
AAAGAGTATTTTTCTAGCAAGAAATCATACCCACAGTATTGTGCTGATAT
ACAATCAATAAGATTAAATCAGGACGAAACTGTTCTTAGTTACTACAATC
GCATTAAAACTTTAGTTACTAATACTATTTCCTGTTTAAACGAAAAATTT
AACAACGTTCAAGAAGTCGATAGCATGAAAAAACTAATAGATGGGCTAGC
ATTAGAGTCATTCAAACGAGGTTTACCCGACGACCTTGTTTATGTGGTAT
CGGTCCAAAATCCAGATAATATCGAAGACGCAAATAAGTTAGCCATGCGC
ATAGAAGATTTGAAAGGTAGTAGCGCTCGTAATTTCAACTACCTGTGTTA
CACTCAAACTAACAAACCGGAACAAATCCCTATCGTTCACTCGTCTCCTG
TTAATAGTTTCGAAGATGACAAACTTTCATTTTTCTATGAGCACAATAAT
GACCCACCCCTACTAACAAATAATAAACATAATGATATTCAGTCGCACGA
TGAATCTTATAAATTTCAAAATAATAATTACAGAAAAAAACATTCTTTTG
GAAAGCATTACCATTCTCAATACTTTCCTCATATACCACACCATATCTTA
TTTAATAATTACTATCCATACGAATATGCGCAGCCTATGCCATTCGAGAC
AATGCCTCAGTTTTTCTATCCTTCAAGACATCATTTTCCGAATCCTCTGG
CTACACCTTACAATCATCACCCATATGATGACGTAACAAATCCAAATTAC
AATCTAACTACTCCTCATTTTGCTAATCACAAAGATTCTTTTGAGTTTCA
GGAAAGAAATCAGCCAGATAAGAAATTTTCTCGGCTAGCGATAATTCAGA
AAAACTATCCAATTGTAACTTTGCATGCACCTGAATTTCCCTGTTTAAAA
TTTCCAATAGGATCCCATCAAAAGCGACAAAAGCCACTTAGAAACCCATA
A

protein sequence of Cotesia_glomerata023024-RA

>Cotesia_glomerata023024-PA ID=Cotesia_glomerata023024-PA|Name=Cotesia_glomerata023024-RA|organism=Cotesia glomerata|type=polypeptide|length=417bp
MGHEADIQNLTHHQNITNAIITTIGESMLLHQVLLRVPTFDGRNMPLKLF
LEDVESAVEDSPEALHPTLLKTIKARLKGLARDAIHGKVIVTFPQLKDAL
KEYFSSKKSYPQYCADIQSIRLNQDETVLSYYNRIKTLVTNTISCLNEKF
NNVQEVDSMKKLIDGLALESFKRGLPDDLVYVVSVQNPDNIEDANKLAMR
IEDLKGSSARNFNYLCYTQTNKPEQIPIVHSSPVNSFEDDKLSFFYEHNN
DPPLLTNNKHNDIQSHDESYKFQNNNYRKKHSFGKHYHSQYFPHIPHHIL
FNNYYPYEYAQPMPFETMPQFFYPSRHHFPNPLATPYNHHPYDDVTNPNY
NLTTPHFANHKDSFEFQERNQPDKKFSRLAIIQKNYPIVTLHAPEFPCLK
FPIGSHQKRQKPLRNP.

mRNA from alignment at Contig4354:9523..10773-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Cotesia_glomerata023024-RA ID=Cotesia_glomerata023024-RA|Name=Cotesia_glomerata023024-RA|organism=Cotesia glomerata|type=mRNA|length=1251bp|location=Sequence derived from alignment at Contig4354:9523..10773- (Cotesia glomerata)
ATGGGTCACGAAGCTGACATTCAAAATCTTACCCACCACCAAAACATAAC
AAATGCAATTATAACAACTATAGGTGAATCCATGTTGTTACACCAAGTGC
TATTGAGAGTACCTACTTTTGATGGCAGAAATATGCCTTTAAAATTATTC
TTAGAAGATGTCGAAAGTGCGGTAGAAGATTCCCCCGAAGCGCTCCATCC
CACTCTTCTGAAAACTATAAAAGCTAGATTAAAAGGCCTAGCCAGAGACG
CAATTCACGGTAAAGTTATTGTTACTTTCCCCCAATTAAAGGACGCTTTG
AAAGAGTATTTTTCTAGCAAGAAATCATACCCACAGTATTGTGCTGATAT
ACAATCAATAAGATTAAATCAGGACGAAACTGTTCTTAGTTACTACAATC
GCATTAAAACTTTAGTTACTAATACTATTTCCTGTTTAAACGAAAAATTT
AACAACGTTCAAGAAGTCGATAGCATGAAAAAACTAATAGATGGGCTAGC
ATTAGAGTCATTCAAACGAGGTTTACCCGACGACCTTGTTTATGTGGTAT
CGGTCCAAAATCCAGATAATATCGAAGACGCAAATAAGTTAGCCATGCGC
ATAGAAGATTTGAAAGGTAGTAGCGCTCGTAATTTCAACTACCTGTGTTA
CACTCAAACTAACAAACCGGAACAAATCCCTATCGTTCACTCGTCTCCTG
TTAATAGTTTCGAAGATGACAAACTTTCATTTTTCTATGAGCACAATAAT
GACCCACCCCTACTAACAAATAATAAACATAATGATATTCAGTCGCACGA
TGAATCTTATAAATTTCAAAATAATAATTACAGAAAAAAACATTCTTTTG
GAAAGCATTACCATTCTCAATACTTTCCTCATATACCACACCATATCTTA
TTTAATAATTACTATCCATACGAATATGCGCAGCCTATGCCATTCGAGAC
AATGCCTCAGTTTTTCTATCCTTCAAGACATCATTTTCCGAATCCTCTGG
CTACACCTTACAATCATCACCCATATGATGACGTAACAAATCCAAATTAC
AATCTAACTACTCCTCATTTTGCTAATCACAAAGATTCTTTTGAGTTTCA
GGAAAGAAATCAGCCAGATAAGAAATTTTCTCGGCTAGCGATAATTCAGA
AAAACTATCCAATTGTAACTTTGCATGCACCTGAATTTCCCTGTTTAAAA
TTTCCAATAGGATCCCATCAAAAGCGACAAAAGCCACTTAGAAACCCATA
A

Coding sequence (CDS) from alignment at Contig4354:9523..10773-

>Cotesia_glomerata023024-RA ID=Cotesia_glomerata023024-RA|Name=Cotesia_glomerata023024-RA|organism=Cotesia glomerata|type=CDS|length=1251bp|location=Sequence derived from alignment at Contig4354:9523..10773- (Cotesia glomerata)
ATGGGTCACGAAGCTGACATTCAAAATCTTACCCACCACCAAAACATAAC
AAATGCAATTATAACAACTATAGGTGAATCCATGTTGTTACACCAAGTGC
TATTGAGAGTACCTACTTTTGATGGCAGAAATATGCCTTTAAAATTATTC
TTAGAAGATGTCGAAAGTGCGGTAGAAGATTCCCCCGAAGCGCTCCATCC
CACTCTTCTGAAAACTATAAAAGCTAGATTAAAAGGCCTAGCCAGAGACG
CAATTCACGGTAAAGTTATTGTTACTTTCCCCCAATTAAAGGACGCTTTG
AAAGAGTATTTTTCTAGCAAGAAATCATACCCACAGTATTGTGCTGATAT
ACAATCAATAAGATTAAATCAGGACGAAACTGTTCTTAGTTACTACAATC
GCATTAAAACTTTAGTTACTAATACTATTTCCTGTTTAAACGAAAAATTT
AACAACGTTCAAGAAGTCGATAGCATGAAAAAACTAATAGATGGGCTAGC
ATTAGAGTCATTCAAACGAGGTTTACCCGACGACCTTGTTTATGTGGTAT
CGGTCCAAAATCCAGATAATATCGAAGACGCAAATAAGTTAGCCATGCGC
ATAGAAGATTTGAAAGGTAGTAGCGCTCGTAATTTCAACTACCTGTGTTA
CACTCAAACTAACAAACCGGAACAAATCCCTATCGTTCACTCGTCTCCTG
TTAATAGTTTCGAAGATGACAAACTTTCATTTTTCTATGAGCACAATAAT
GACCCACCCCTACTAACAAATAATAAACATAATGATATTCAGTCGCACGA
TGAATCTTATAAATTTCAAAATAATAATTACAGAAAAAAACATTCTTTTG
GAAAGCATTACCATTCTCAATACTTTCCTCATATACCACACCATATCTTA
TTTAATAATTACTATCCATACGAATATGCGCAGCCTATGCCATTCGAGAC
AATGCCTCAGTTTTTCTATCCTTCAAGACATCATTTTCCGAATCCTCTGG
CTACACCTTACAATCATCACCCATATGATGACGTAACAAATCCAAATTAC
AATCTAACTACTCCTCATTTTGCTAATCACAAAGATTCTTTTGAGTTTCA
GGAAAGAAATCAGCCAGATAAGAAATTTTCTCGGCTAGCGATAATTCAGA
AAAACTATCCAATTGTAACTTTGCATGCACCTGAATTTCCCTGTTTAAAA
TTTCCAATAGGATCCCATCAAAAGCGACAAAAGCCACTTAGAAACCCATA
A

Synonyms

The feature 'Cotesia_glomerata023024-RA' has the following synonyms


Synonym
augustus_masked-Contig4354-processed-gene-0.2-mRNA-1