rna355 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	XM_015507857.1
Unique Name	rna355
Type	mRNA
Organism	Diuraphis noxia (Russian wheat aphid)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
JOTR01000004	contig	JOTR01000004:642903..644763 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)	2016-03-02

Properties


Property Name	Value
Gbkey	mRNA
Gene	LOC107161443
Model evidence	Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Product	coiled-coil domain-containing protein 51-like, transcript variant X1
Transcript id	XM_015507857.1

Cross References

External references for this mRNA


Database	Accession
GeneID	107161443
Genbank	XM_015507857.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
LOC107161443	gene239	Diuraphis noxia	gene	JOTR01000004 642903..644766 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
XM_015507857.1	rna355	Diuraphis noxia	polypeptide	JOTR01000004 642980..643813 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
XP_015363343.1	cds350	Diuraphis noxia	CDS	JOTR01000004 642980..643813 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
id3070	id3070	Diuraphis noxia	exon	JOTR01000004 642903..643881 -
id3069	id3069	Diuraphis noxia	exon	JOTR01000004 644679..644763 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at JOTR01000004:642903..644763-
coding sequence from alignment at JOTR01000004:642903..644763-

spliced messenger RNA

>rna355 ID=rna355|Name=XM_015507857.1|organism=Diuraphis noxia|type=mRNA|length=1064bp|location=Sequence derived from alignment at JOTR01000004:642903..644763- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.  
AAAATTTCGAACTGGTAAATTTGCAGATCCTTTTAAATGTTTAAAATTTG
ACTAAATGAGATAACAAAGTTTTTATTTTAAACAAAAGTGTGCTGGTTCA
TCAAAATCTATCAGTTGGTATCAAATAGATTGTGACTTGTGATCACATGA
ACCATGAAATTTAAAAAGCATATAGAAACATTTTTACATACAATGAAGGA
AAAAGCACAAACCAAACTTTCCAAATCAAATAATTCACGAGCTGAAATAT
ATAACCGACTTGCAGCTTATCGTCCAGAATACGATAAAGTTGTTTCATGG
TATGAACGGGTAACTGGTTTAAGTGAAGTTCGAGTAGCCCAAGATAGAGT
GTTGGAGTCTCAAAAACAATTTATGAATGCCCAAGATAAAAGAAGAGATG
TTTCAGTGGAACTCAGAACAATTCAAAACAAACTAAAAGACATCCGAAAT
GAACTTTTAAATACTTCTAGATCAGAAGATAGGTATATTGAATTAGTAAC
ACAGGAACATGCTTTATTAAAACAAGAAAATTATATCATCGATCGGGTAA
ACTATAGTGAAAAAGAGGAAAGAGATAGCTTCATATTACTCTCTACCACC
TTGAAAGATAGTCATGATCGAGAGAGAATTCAAGCTGAGAGAACTAAATA
TGTATCTATTGTTGGCTCAATTCTGGGTACTATTATTGGTATAATTGGAA
GTACTGTAATCAATGCATGGAAAATGAATGAATTCAAAAGAATGGTGTTG
GATGCCAAATTGGATTCATCAAATTCAATCAAAAGTGATCAGATAAAACA
TTTATTGTTACAAGTTCAAAAACAAAATAAAATGTTGAAAAATGCACAAT
TCAAGTTAAATTCAGATAAACTGACAAGTATCGTAGAGCCAAACTGGAAA
TACACTGACCGTGATGTTATTATATTAACAACTATAAATTGTACTTTAGT
AGCTCTATCAGCATATTTAGTGTCAAAGTTATTTTAATCSGTGATGTCTA
TTCAAATTTTGTTTTTATTATTGTTGTTGGTTTTTATTTTTTATCAAACA
ATGTTCTCCCGTTA

protein sequence of XM_015507857.1

>rna355 ID=rna355|Name=XM_015507857.1|organism=Diuraphis noxia|type=polypeptide|length=278bp
MKFKKHIETFLHTMKEKAQTKLSKSNNSRAEIYNRLAAYRPEYDKVVSWY
ERVTGLSEVRVAQDRVLESQKQFMNAQDKRRDVSVELRTIQNKLKDIRNE
LLNTSRSEDRYIELVTQEHALLKQENYIIDRVNYSEKEERDSFILLSTTL
KDSHDRERIQAERTKYVSIVGSILGTIIGIIGSTVINAWKMNEFKRMVLD
AKLDSSNSIKSDQIKHLLLQVQKQNKMLKNAQFKLNSDKLTSIVEPNWKY
TDRDVIILTTINCTLVALSAYLVSKLF.

mRNA from alignment at JOTR01000004:642903..644763-

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna355 ID=rna355|Name=XM_015507857.1|organism=Diuraphis noxia|type=mRNA|length=1861bp|location=Sequence derived from alignment at JOTR01000004:642903..644763- (Diuraphis noxia)
AAAATTTCGAACTGGTAAATTTGCAGATCCTTTTAAATGTTTAAAATTTG
ACTAAATGAGATAACAAAGTTTTTATTTTAAACAAGTATGTAAACTAATT
TAAATTATTTCCCTTTTTATATTTTATATTAAAATAAGTTTTAACAATAT
TTATCTTTAATCAATCATGTGTGTGTATAGGTGCCTTAATTATACTAAAA
TACATATGTCAATTGTCACATCCATGATAGTGTAATCTATTTTTAATTTA
ATAATTCACCGAYATTCAAAGTTGTTAATACATTTGTTATTCAATTATTT
TAATTAGTCTATATTATTGTCCACTACTATACTATGTACAAATATTCAAC
ACATCATGTCTTCTGTAGCAGTGTTTACTTCTGGAAATAAGGTTTATTTT
TTAATTGTTTCACCCCCTTTGTATACCTAATGCTAAGAATAATTGAAAAA
TATATTTCAATTGAATAAATTATTATTTAATAGATAATCCATTTGATTTA
AATAAATCTTATATAAATCATAATATTTAATCCATTGTTCAAAAGAAAAA
CCTGTTATAAAATGTGAAATTGACATAATGATTTATAAATTTACTTGYTT
ATTATAGTTTAAATTAGTTTACTCAATTTATGCATGTTTTTATATTTAAA
TACATTTTTTCCTCAATTATATTTAAATAGATCAATGTATTCCATTTTAT
ATTTAATTTTGCATTTAAATCATATGTAATGTAATGTTTATTGTAATTTA
CTATTAACTATGAAGACTGATTTTATTTTATTTTATTTATTGTATTCCAT
ACAAGTGTTTTAGATTCAATAAGCTTAAAATTTAAATTAAGGTTAAGTTT
CCATCTCACAGAATCAATTTCCTTATTTTCAGAAGTGTGCTGGTTCATCA
AAATCTATCAGTTGGTATCAAATAGATTGTGACTTGTGATCACATGAACC
ATGAAATTTAAAAAGCATATAGAAACATTTTTACATACAATGAAGGAAAA
AGCACAAACCAAACTTTCCAAATCAAATAATTCACGAGCTGAAATATATA
ACCGACTTGCAGCTTATCGTCCAGAATACGATAAAGTTGTTTCATGGTAT
GAACGGGTAACTGGTTTAAGTGAAGTTCGAGTAGCCCAAGATAGAGTGTT
GGAGTCTCAAAAACAATTTATGAATGCCCAAGATAAAAGAAGAGATGTTT
CAGTGGAACTCAGAACAATTCAAAACAAACTAAAAGACATCCGAAATGAA
CTTTTAAATACTTCTAGATCAGAAGATAGGTATATTGAATTAGTAACACA
GGAACATGCTTTATTAAAACAAGAAAATTATATCATCGATCGGGTAAACT
ATAGTGAAAAAGAGGAAAGAGATAGCTTCATATTACTCTCTACCACCTTG
AAAGATAGTCATGATCGAGAGAGAATTCAAGCTGAGAGAACTAAATATGT
ATCTATTGTTGGCTCAATTCTGGGTACTATTATTGGTATAATTGGAAGTA
CTGTAATCAATGCATGGAAAATGAATGAATTCAAAAGAATGGTGTTGGAT
GCCAAATTGGATTCATCAAATTCAATCAAAAGTGATCAGATAAAACATTT
ATTGTTACAAGTTCAAAAACAAAATAAAATGTTGAAAAATGCACAATTCA
AGTTAAATTCAGATAAACTGACAAGTATCGTAGAGCCAAACTGGAAATAC
ACTGACCGTGATGTTATTATATTAACAACTATAAATTGTACTTTAGTAGC
TCTATCAGCATATTTAGTGTCAAAGTTATTTTAATCSGTGATGTCTATTC
AAATTTTGTTTTTATTATTGTTGTTGGTTTTTATTTTTTATCAAACAATG
TTCTCCCGTTA

Coding sequence (CDS) from alignment at JOTR01000004:642903..644763-

>rna355 ID=rna355|Name=XM_015507857.1|organism=Diuraphis noxia|type=CDS|length=834bp|location=Sequence derived from alignment at JOTR01000004:642903..644763- (Diuraphis noxia)
ATGAAATTTAAAAAGCATATAGAAACATTTTTACATACAATGAAGGAAAA
AGCACAAACCAAACTTTCCAAATCAAATAATTCACGAGCTGAAATATATA
ACCGACTTGCAGCTTATCGTCCAGAATACGATAAAGTTGTTTCATGGTAT
GAACGGGTAACTGGTTTAAGTGAAGTTCGAGTAGCCCAAGATAGAGTGTT
GGAGTCTCAAAAACAATTTATGAATGCCCAAGATAAAAGAAGAGATGTTT
CAGTGGAACTCAGAACAATTCAAAACAAACTAAAAGACATCCGAAATGAA
CTTTTAAATACTTCTAGATCAGAAGATAGGTATATTGAATTAGTAACACA
GGAACATGCTTTATTAAAACAAGAAAATTATATCATCGATCGGGTAAACT
ATAGTGAAAAAGAGGAAAGAGATAGCTTCATATTACTCTCTACCACCTTG
AAAGATAGTCATGATCGAGAGAGAATTCAAGCTGAGAGAACTAAATATGT
ATCTATTGTTGGCTCAATTCTGGGTACTATTATTGGTATAATTGGAAGTA
CTGTAATCAATGCATGGAAAATGAATGAATTCAAAAGAATGGTGTTGGAT
GCCAAATTGGATTCATCAAATTCAATCAAAAGTGATCAGATAAAACATTT
ATTGTTACAAGTTCAAAAACAAAATAAAATGTTGAAAAATGCACAATTCA
AGTTAAATTCAGATAAACTGACAAGTATCGTAGAGCCAAACTGGAAATAC
ACTGACCGTGATGTTATTATATTAACAACTATAAATTGTACTTTAGTAGC
TCTATCAGCATATTTAGTGTCAAAGTTATTTTAA

Metabolic Data

View metabolic data for rna355 on AphidCyc