rna3630 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameXM_015507625.1
Unique Namerna3630
TypemRNA
OrganismDiuraphis noxia (Russian wheat aphid)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
JOTR01000065contigJOTR01000065:122983..127002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)2016-03-02
Properties
Property NameValue
Transcript idXM_015507625.1
Product5-demethoxyubiquinone hydroxylase, mitochondrial, transcript variant X4
Model evidenceSupporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
GeneLOC107161278
GbkeymRNA
Cross References
External references for this mRNA
DatabaseAccession
GenbankXM_015507625.1
GeneID107161278
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
LOC107161278gene2457Diuraphis noxiageneJOTR01000065 122983..127002 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
XM_015507625.1rna3630Diuraphis noxiapolypeptideJOTR01000065 126193..126909 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
id31719id31719Diuraphis noxiaexonJOTR01000065 122983..123176 +
id31720id31720Diuraphis noxiaexonJOTR01000065 126175..126346 +
id31721id31721Diuraphis noxiaexonJOTR01000065 126414..126563 +
id31722id31722Diuraphis noxiaexonJOTR01000065 126632..127002 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
XP_015363111.1cds3537Diuraphis noxiaCDSJOTR01000065 126632..126909 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>rna3630 ID=rna3630|Name=XM_015507625.1|organism=Diuraphis noxia|type=mRNA|length=887bp|location=Sequence derived from alignment at JOTR01000065:122983..127002+ (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.  
caccgccgccgccgccgcagccgcAGTGTGTGTCATGACGTGTTGTTCGT
GTGTGCCGCTTCGATTGGATTACGCGAGAAGGTGTATCGAAAAACAAAAC
GGTCGAGCCCGGACCGAACGCCAGCTCAGGGGGGTCCTCCRCCGAAGCGG
CAATCATCGCCGTGGGTGAMGAGACGTTTCGCGGGCAGGCCgaggctaac
aataacaacaaaatgaAAATGGTTCTGCAAAAAATGACATTTTCCAGAAT
AATTTTCCAACGAGGATTGCATGGTGCTAACAAAAAATTAGATAGTCTCA
TAAGAGTTAATCATGCTGGAGAACTTGGAGCTGATCGTATATATGCAGGA
CAGATGGCagtattagGAAACAGTAGTGTAGGTCCAAAGATTAAAGAGAT
GTGGGAACAAGAAAAAGCGCACAGGTATAAATTTGAACAACTTATAAACC
AAAATAGAGTACGGCCATCACTGTTATTTCCTTTATGGTATTGTGCTGGC
TATGTACTTGGAgctggtacagCACTAATGGGTCCTAAAGCTGCTATGGC
TTGCACTGTTGCTGTAGAAACTGTTATCGTAGAACACTACAATGATCAAT
TACGACACCTRATGGATGATCCCAAATCTGACAAAGAGCTTCTTGAAACC
ATCAAAAAGTTTAGAGATGAAGAACAAGAACATCATGATTGTGGTATGGA
TCATGGGGCTGAGCAAGCTCCATTTTATGATGCATTAACAAAAGTCATCA
AAACTGGGTGCAAAGTAGCTATTGAAGTAGCAAAAAGAGTGTGAATTTAT
CTCCTATATGATATCAgattataataactatgattaaatgtttaaattac
ctaaaatatatttttaaagaataaatatttttattaa
back to top

protein sequence of XM_015507625.1

>rna3630 ID=rna3630|Name=XM_015507625.1|organism=Diuraphis noxia|type=polypeptide|length=194bp
MKMVLQKMTFSRIIFQRGLHGANKKLDSLIRVNHAGELGADRIYAGQMAV
LGNSSVGPKIKEMWEQEKAHRYKFEQLINQNRVRPSLLFPLWYCAGYVLG
AGTALMGPKAAMACTVAVETVIVEHYNDQLRHLMDDPKSDKELLETIKKF
RDEEQEHHDCGMDHGAEQAPFYDALTKVIKTGCKVAIEVAKRV.
back to top

mRNA from alignment at JOTR01000065:122983..127002+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3630 ID=rna3630|Name=XM_015507625.1|organism=Diuraphis noxia|type=mRNA|length=4020bp|location=Sequence derived from alignment at JOTR01000065:122983..127002+ (Diuraphis noxia)
caccgccgccgccgccgcagccgcAGTGTGTGTCATGACGTGTTGTTCGT GTGTGCCGCTTCGATTGGATTACGCGAGAAGGTGTATCGAAAAACAAAAC GGTCGAGCCCGGACCGAACGCCAGCTCAGGGGGGTCCTCCRCCGAAGCGG CAATCATCGCCGTGGGTGAMGAGACGTTTCGCGGGCAGGCCgaggtaaag aaaaaaaaagaaaaaagccCTAATTGGCAGCACGCATGATATGGCGTAAA AGAATCGACGCGACACACCGATGGTGACGTTAATGAATATTACCAGAGTA CGGCTGCGTACGCACCTGCGTGACGGGAGAACGGCGGCTGCGGCGTCGGC GTCGGcgtcgacggcggcggcggcagtgcCCGTGTTGGCCGAGTCCATCG CCCGTACGCGGCGCGCGCGAAAAACCGTCGACGGCAGCACCTCGTCCGGC TGCAACTATCTCTTGGTCTCGACCGACCGCGTCTTTTTCACCGGTCCGGC GCCTTTGAAACGGCCCTGTACGAGCACACGGACGACGGCGCGTGAACGGA TAACCACTTCGCCCGGTACGTAACGCGAACAGAGGGAAAACTGATGTAAC GGCGATGGGAAAAAAACTCACCGCGTATGCCTATATATGATATCACGTTA TATGTGTAGATTTATTTGACGTGTATTACATggtttgtattgtataatag tcTACGTGTGTATTATACCGTAGAACACACGCACGTCACGGGGACGCGGG CGGCGCGTTGTTATCGATCGGCCCCGTCCGTCCGGCCGATCGATGTCGTC GCCATTTTGGTTGTACAGCCGTCGTCGTCTACCGTCGTAACTCGTAGCAG CAGCAGTCGTGGCCGCCGCCGCGTGTCGTGTCGTGCAATCCGACTACTCA CAACGCGGCCGATTGTATTCTGTCGTACACGCTCCTACACGGGCACCCCC CCGAGACGTTATTAATATACCATAAGATGCCctcgtattattatgtaata ttacaataatattgatgtttWTWCCGCgcttaatgatataatattattaa atggtaataataataataatattattgtgcttgTTGCGATAACAGTTTAT AGTAGTAGTCGTCGGCGTTGTCGTCGTCTTTGTCGTTGTCGCAATTAAAT ACGCGTCTGCGCACCGACCCGTTCACGTCACTTTCGGATACTTCGCCGCC CCGGCGACACGTCGCGCCACTCGAGAGTCGAGACGGTTCTCGCACCAGTA CGGCCGTATCTACCGCGAAAAACCGTTCGCCGAAAACCGCGGGCGTCAGA ACGTTTTCCCGTTCAATCGTCGTTTCGACACCCAAACAGCGGTGTGTGTG CAAGGCGTAGGCACGCGCGAGCGTCGTAGTTATTAGGCCGTGCGGACCCG TACGTGTCGGTGGTTACTAGTTTTGCGCGCGTCAAGTGCTGAGCCGCGGT AGCCAGGAGACATTTTGWCACTCGACATACGCCATTGGTGCGCGCGCCCC GCCATCTRCTGGTAAATTAGCTCAGTCTCGGTTTTGCTTTACCCACCAAA TTTCGAAATCGTGTGCAGAGTACCGTTTTCTTCGGTCTTAGCACCGTTTG TSACGACCTTCCAACTTACCTTCTCCGAATTAATGATCTATTATTTATTC GCTGTACTGTAGTAGTCTTATCTACAAATTACTAGGCATTCATATttcga aatataattataaagtgcTGTCTGGTtgacatcatattaataattagctt TGACTGCTTTGAGGTCACATCAAATCAGAAgtattaagatattaattaat gtgGATGGtcgttattataacattatacaatcaACTGATTTGATgctaat tagaaattattatttacactttgggagatacattttaaatgttttcaatt tgatagataaataatttattattgtacatttaaaacttGTAAAGTGTAac caattattttgttaaattaattcttTCCATTTTCTAAAGATAAGTGAAgt gcttattttaattttaaatatttgtgtaaagCTAGGTAGTTGAACATTTT TAGTAACTTTTTTATTGGTTAGTTGTTGATAACTTGCACATAAGTCccaa tagatacatattttaagtatactttaCAAATCACagatcatttatttata catttattaacacTTAAATTGCATACTAATTGTACAGTCAATGCCATCTA TGATGACTTTTAGGCACTTCATCATAATCATccatatcatcatcatcgtc ttCACAAGAATGTGGATATTCTGACCTATGATTATCGTGTTTTGGCTTga gtatttctaaataaaaaataaaaccaattaataattttacaacgtaaaca aacagtttttaaatttacttcttTGGCAAAATTTCCCAAACCATCCTTGT TGACAACGACATATTCTATTTGCTGTACAATATCCATGATGGCAGGGCCT CttgcaattataatattgttttattggttGACCAATTTCACAATGGTCTC CTTGAAAACCAAATATACATCTACATTTGTTCACTCCTTTACATTTTCCA CCATTTAAACATGGTATAATACATTTAGCTGAAATTGTTAACTTTCTATT AGaactaatcattttttaaagtagATAAACTTACAGTATTCACATCGTAA ACCATAGAACCCCTTAGGACATTGGCATGTGtctttttgtatacattttc cYCCATTTAAACACTTTTCTGCACAAATAcctgaaatgtataaaaaaaaa aaatgatttttttRttttaaacaaaattctatattacactatatgttaca attacaacaataaacataaaaggacgtcacacccgcatgtgttgtcttcg tYttacacacgtacgacataTYAGATTTCTGATCACTACTATCAATAGGA TGCTATCGGTATAGACATTAGAATGAATTagcctattataaaacttaggt aagaacattatcgtGTTCGCTCGATctgttttcacaatattttaattttt aagtgagtaatgagtattttaaaatattaatattttacatacggAGACAG GGACAATATATGCAGGTGCGACATCCTCATAAGTGATAAGAGTTAGAAAA TAAAGATTAGACAGGAGGAAAAGACCTCCCATCGGAAGTACTWCAagcaa aaaatatgattaattttttttaaatgttatttttgattataggctaacaa taacaacaaaatgaAAATGGTTCTGCAAAAAATGACATTTTCCAGAATAA TTTTCCAACGAGGATTGCATGGTGCTAACAAAAAATTAGATAGTCTCATA AGAGTTAATCATGCTGGAGAACTTGGAGCTGATCGTATATATGCAGGACA GATGGCagtattaggtatgtaaaaaatatgtattattcacATTTTATCAG TTGTTGATCTTAattatttgatcatttttaGGAAACAGTAGTGTAGGTCC AAAGATTAAAGAGATGTGGGAACAAGAAAAAGCGCACAGGTATAAATTTG AACAACTTATAAACCAAAATAGAGTACGGCCATCACTGTTATTTCCTTTA TGGTATTGTGCTGGCTATGTACTTGGAgctggtaaatattttaatacaaa gataattgaatctaaaaatgtttaattaatataaaaatcatatttatagg tacagCACTAATGGGTCCTAAAGCTGCTATGGCTTGCACTGTTGCTGTAG AAACTGTTATCGTAGAACACTACAATGATCAATTACGACACCTRATGGAT GATCCCAAATCTGACAAAGAGCTTCTTGAAACCATCAAAAAGTTTAGAGA TGAAGAACAAGAACATCATGATTGTGGTATGGATCATGGGGCTGAGCAAG CTCCATTTTATGATGCATTAACAAAAGTCATCAAAACTGGGTGCAAAGTA GCTATTGAAGTAGCAAAAAGAGTGTGAATTTATCTCCTATATGATATCAg attataataactatgattaaatgtttaaattacctaaaatatatttttaa agaataaatatttttattaa
back to top

Coding sequence (CDS) from alignment at JOTR01000065:122983..127002+

>rna3630 ID=rna3630|Name=XM_015507625.1|organism=Diuraphis noxia|type=CDS|length=582bp|location=Sequence derived from alignment at JOTR01000065:122983..127002+ (Diuraphis noxia)
atgaAAATGGTTCTGCAAAAAATGACATTTTCCAGAATAATTTTCCAACG
AGGATTGCATGGTGCTAACAAAAAATTAGATAGTCTCATAAGAGTTAATC
ATGCTGGAGAACTTGGAGCTGATCGTATATATGCAGGACAGATGGCagta
ttagGAAACAGTAGTGTAGGTCCAAAGATTAAAGAGATGTGGGAACAAGA
AAAAGCGCACAGGTATAAATTTGAACAACTTATAAACCAAAATAGAGTAC
GGCCATCACTGTTATTTCCTTTATGGTATTGTGCTGGCTATGTACTTGGA
gctggtacagCACTAATGGGTCCTAAAGCTGCTATGGCTTGCACTGTTGC
TGTAGAAACTGTTATCGTAGAACACTACAATGATCAATTACGACACCTRA
TGGATGATCCCAAATCTGACAAAGAGCTTCTTGAAACCATCAAAAAGTTT
AGAGATGAAGAACAAGAACATCATGATTGTGGTATGGATCATGGGGCTGA
GCAAGCTCCATTTTATGATGCATTAACAAAAGTCATCAAAACTGGGTGCA
AAGTAGCTATTGAAGTAGCAAAAAGAGTGTGA
back to top