rna3631 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameXM_015507623.1
Unique Namerna3631
TypemRNA
OrganismDiuraphis noxia (Russian wheat aphid)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
JOTR01000065contigJOTR01000065:123459..127002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)2016-03-02
Properties
Property NameValue
Transcript idXM_015507623.1
Product5-demethoxyubiquinone hydroxylase, mitochondrial, transcript variant X2
Model evidenceSupporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
GeneLOC107161278
GbkeymRNA
Cross References
External references for this mRNA
DatabaseAccession
GenbankXM_015507623.1
GeneID107161278
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
LOC107161278gene2457Diuraphis noxiageneJOTR01000065 122983..127002 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
XM_015507623.1rna3631Diuraphis noxiapolypeptideJOTR01000065 126193..126909 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
id31723id31723Diuraphis noxiaexonJOTR01000065 123459..123547 +
id31724id31724Diuraphis noxiaexonJOTR01000065 126175..126346 +
id31725id31725Diuraphis noxiaexonJOTR01000065 126414..126563 +
id31726id31726Diuraphis noxiaexonJOTR01000065 126632..127002 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
XP_015363109.1cds3535Diuraphis noxiaCDSJOTR01000065 126632..126909 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>rna3631 ID=rna3631|Name=XM_015507623.1|organism=Diuraphis noxia|type=mRNA|length=782bp|location=Sequence derived from alignment at JOTR01000065:123459..127002+ (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.  
CCGCGTCTTTTTCACCGGTCCGGCGCCTTTGAAACGGCCCTGTACGAGCA
CACGGACGACGGCGCGTGAACGGATAACCACTTCGCCCGgctaacaataa
caacaaaatgaAAATGGTTCTGCAAAAAATGACATTTTCCAGAATAATTT
TCCAACGAGGATTGCATGGTGCTAACAAAAAATTAGATAGTCTCATAAGA
GTTAATCATGCTGGAGAACTTGGAGCTGATCGTATATATGCAGGACAGAT
GGCagtattagGAAACAGTAGTGTAGGTCCAAAGATTAAAGAGATGTGGG
AACAAGAAAAAGCGCACAGGTATAAATTTGAACAACTTATAAACCAAAAT
AGAGTACGGCCATCACTGTTATTTCCTTTATGGTATTGTGCTGGCTATGT
ACTTGGAgctggtacagCACTAATGGGTCCTAAAGCTGCTATGGCTTGCA
CTGTTGCTGTAGAAACTGTTATCGTAGAACACTACAATGATCAATTACGA
CACCTRATGGATGATCCCAAATCTGACAAAGAGCTTCTTGAAACCATCAA
AAAGTTTAGAGATGAAGAACAAGAACATCATGATTGTGGTATGGATCATG
GGGCTGAGCAAGCTCCATTTTATGATGCATTAACAAAAGTCATCAAAACT
GGGTGCAAAGTAGCTATTGAAGTAGCAAAAAGAGTGTGAATTTATCTCCT
ATATGATATCAgattataataactatgattaaatgtttaaattacctaaa
atatatttttaaagaataaatatttttattaa
back to top

protein sequence of XM_015507623.1

>rna3631 ID=rna3631|Name=XM_015507623.1|organism=Diuraphis noxia|type=polypeptide|length=194bp
MKMVLQKMTFSRIIFQRGLHGANKKLDSLIRVNHAGELGADRIYAGQMAV
LGNSSVGPKIKEMWEQEKAHRYKFEQLINQNRVRPSLLFPLWYCAGYVLG
AGTALMGPKAAMACTVAVETVIVEHYNDQLRHLMDDPKSDKELLETIKKF
RDEEQEHHDCGMDHGAEQAPFYDALTKVIKTGCKVAIEVAKRV.
back to top

mRNA from alignment at JOTR01000065:123459..127002+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3631 ID=rna3631|Name=XM_015507623.1|organism=Diuraphis noxia|type=mRNA|length=3544bp|location=Sequence derived from alignment at JOTR01000065:123459..127002+ (Diuraphis noxia)
CCGCGTCTTTTTCACCGGTCCGGCGCCTTTGAAACGGCCCTGTACGAGCA CACGGACGACGGCGCGTGAACGGATAACCACTTCGCCCGGTACGTAACGC GAACAGAGGGAAAACTGATGTAACGGCGATGGGAAAAAAACTCACCGCGT ATGCCTATATATGATATCACGTTATATGTGTAGATTTATTTGACGTGTAT TACATggtttgtattgtataatagtcTACGTGTGTATTATACCGTAGAAC ACACGCACGTCACGGGGACGCGGGCGGCGCGTTGTTATCGATCGGCCCCG TCCGTCCGGCCGATCGATGTCGTCGCCATTTTGGTTGTACAGCCGTCGTC GTCTACCGTCGTAACTCGTAGCAGCAGCAGTCGTGGCCGCCGCCGCGTGT CGTGTCGTGCAATCCGACTACTCACAACGCGGCCGATTGTATTCTGTCGT ACACGCTCCTACACGGGCACCCCCCCGAGACGTTATTAATATACCATAAG ATGCCctcgtattattatgtaatattacaataatattgatgtttWTWCCG Cgcttaatgatataatattattaaatggtaataataataataatattatt gtgcttgTTGCGATAACAGTTTATAGTAGTAGTCGTCGGCGTTGTCGTCG TCTTTGTCGTTGTCGCAATTAAATACGCGTCTGCGCACCGACCCGTTCAC GTCACTTTCGGATACTTCGCCGCCCCGGCGACACGTCGCGCCACTCGAGA GTCGAGACGGTTCTCGCACCAGTACGGCCGTATCTACCGCGAAAAACCGT TCGCCGAAAACCGCGGGCGTCAGAACGTTTTCCCGTTCAATCGTCGTTTC GACACCCAAACAGCGGTGTGTGTGCAAGGCGTAGGCACGCGCGAGCGTCG TAGTTATTAGGCCGTGCGGACCCGTACGTGTCGGTGGTTACTAGTTTTGC GCGCGTCAAGTGCTGAGCCGCGGTAGCCAGGAGACATTTTGWCACTCGAC ATACGCCATTGGTGCGCGCGCCCCGCCATCTRCTGGTAAATTAGCTCAGT CTCGGTTTTGCTTTACCCACCAAATTTCGAAATCGTGTGCAGAGTACCGT TTTCTTCGGTCTTAGCACCGTTTGTSACGACCTTCCAACTTACCTTCTCC GAATTAATGATCTATTATTTATTCGCTGTACTGTAGTAGTCTTATCTACA AATTACTAGGCATTCATATttcgaaatataattataaagtgcTGTCTGGT tgacatcatattaataattagcttTGACTGCTTTGAGGTCACATCAAATC AGAAgtattaagatattaattaatgtgGATGGtcgttattataacattat acaatcaACTGATTTGATgctaattagaaattattatttacactttggga gatacattttaaatgttttcaatttgatagataaataatttattattgta catttaaaacttGTAAAGTGTAaccaattattttgttaaattaattcttT CCATTTTCTAAAGATAAGTGAAgtgcttattttaattttaaatatttgtg taaagCTAGGTAGTTGAACATTTTTAGTAACTTTTTTATTGGTTAGTTGT TGATAACTTGCACATAAGTCccaatagatacatattttaagtatacttta CAAATCACagatcatttatttatacatttattaacacTTAAATTGCATAC TAATTGTACAGTCAATGCCATCTATGATGACTTTTAGGCACTTCATCATA ATCATccatatcatcatcatcgtcttCACAAGAATGTGGATATTCTGACC TATGATTATCGTGTTTTGGCTTgagtatttctaaataaaaaataaaacca attaataattttacaacgtaaacaaacagtttttaaatttacttcttTGG CAAAATTTCCCAAACCATCCTTGTTGACAACGACATATTCTATTTGCTGT ACAATATCCATGATGGCAGGGCCTCttgcaattataatattgttttattg gttGACCAATTTCACAATGGTCTCCTTGAAAACCAAATATACATCTACAT TTGTTCACTCCTTTACATTTTCCACCATTTAAACATGGTATAATACATTT AGCTGAAATTGTTAACTTTCTATTAGaactaatcattttttaaagtagAT AAACTTACAGTATTCACATCGTAAACCATAGAACCCCTTAGGACATTGGC ATGTGtctttttgtatacattttccYCCATTTAAACACTTTTCTGCACAA ATAcctgaaatgtataaaaaaaaaaaatgatttttttRttttaaacaaaa ttctatattacactatatgttacaattacaacaataaacataaaaggacg tcacacccgcatgtgttgtcttcgtYttacacacgtacgacataTYAGAT TTCTGATCACTACTATCAATAGGATGCTATCGGTATAGACATTAGAATGA ATTagcctattataaaacttaggtaagaacattatcgtGTTCGCTCGATc tgttttcacaatattttaatttttaagtgagtaatgagtattttaaaata ttaatattttacatacggAGACAGGGACAATATATGCAGGTGCGACATCC TCATAAGTGATAAGAGTTAGAAAATAAAGATTAGACAGGAGGAAAAGACC TCCCATCGGAAGTACTWCAagcaaaaaatatgattaattttttttaaatg ttatttttgattataggctaacaataacaacaaaatgaAAATGGTTCTGC AAAAAATGACATTTTCCAGAATAATTTTCCAACGAGGATTGCATGGTGCT AACAAAAAATTAGATAGTCTCATAAGAGTTAATCATGCTGGAGAACTTGG AGCTGATCGTATATATGCAGGACAGATGGCagtattaggtatgtaaaaaa tatgtattattcacATTTTATCAGTTGTTGATCTTAattatttgatcatt tttaGGAAACAGTAGTGTAGGTCCAAAGATTAAAGAGATGTGGGAACAAG AAAAAGCGCACAGGTATAAATTTGAACAACTTATAAACCAAAATAGAGTA CGGCCATCACTGTTATTTCCTTTATGGTATTGTGCTGGCTATGTACTTGG Agctggtaaatattttaatacaaagataattgaatctaaaaatgtttaat taatataaaaatcatatttataggtacagCACTAATGGGTCCTAAAGCTG CTATGGCTTGCACTGTTGCTGTAGAAACTGTTATCGTAGAACACTACAAT GATCAATTACGACACCTRATGGATGATCCCAAATCTGACAAAGAGCTTCT TGAAACCATCAAAAAGTTTAGAGATGAAGAACAAGAACATCATGATTGTG GTATGGATCATGGGGCTGAGCAAGCTCCATTTTATGATGCATTAACAAAA GTCATCAAAACTGGGTGCAAAGTAGCTATTGAAGTAGCAAAAAGAGTGTG AATTTATCTCCTATATGATATCAgattataataactatgattaaatgttt aaattacctaaaatatatttttaaagaataaatatttttattaa
back to top

Coding sequence (CDS) from alignment at JOTR01000065:123459..127002+

>rna3631 ID=rna3631|Name=XM_015507623.1|organism=Diuraphis noxia|type=CDS|length=582bp|location=Sequence derived from alignment at JOTR01000065:123459..127002+ (Diuraphis noxia)
atgaAAATGGTTCTGCAAAAAATGACATTTTCCAGAATAATTTTCCAACG
AGGATTGCATGGTGCTAACAAAAAATTAGATAGTCTCATAAGAGTTAATC
ATGCTGGAGAACTTGGAGCTGATCGTATATATGCAGGACAGATGGCagta
ttagGAAACAGTAGTGTAGGTCCAAAGATTAAAGAGATGTGGGAACAAGA
AAAAGCGCACAGGTATAAATTTGAACAACTTATAAACCAAAATAGAGTAC
GGCCATCACTGTTATTTCCTTTATGGTATTGTGCTGGCTATGTACTTGGA
gctggtacagCACTAATGGGTCCTAAAGCTGCTATGGCTTGCACTGTTGC
TGTAGAAACTGTTATCGTAGAACACTACAATGATCAATTACGACACCTRA
TGGATGATCCCAAATCTGACAAAGAGCTTCTTGAAACCATCAAAAAGTTT
AGAGATGAAGAACAAGAACATCATGATTGTGGTATGGATCATGGGGCTGA
GCAAGCTCCATTTTATGATGCATTAACAAAAGTCATCAAAACTGGGTGCA
AAGTAGCTATTGAAGTAGCAAAAAGAGTGTGA
back to top