rna3633 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameXM_015507622.1
Unique Namerna3633
TypemRNA
OrganismDiuraphis noxia (Russian wheat aphid)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
JOTR01000065contigJOTR01000065:123993..127002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)2016-03-02
Properties
Property NameValue
Transcript idXM_015507622.1
Product5-demethoxyubiquinone hydroxylase, mitochondrial, transcript variant X1
Model evidenceSupporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
GeneLOC107161278
GbkeymRNA
Cross References
External references for this mRNA
DatabaseAccession
GenbankXM_015507622.1
GeneID107161278
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
LOC107161278gene2457Diuraphis noxiageneJOTR01000065 122983..127002 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
XM_015507622.1rna3633Diuraphis noxiapolypeptideJOTR01000065 124033..126909 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
id31731id31731Diuraphis noxiaexonJOTR01000065 123993..124035 +
id31732id31732Diuraphis noxiaexonJOTR01000065 126175..126346 +
id31733id31733Diuraphis noxiaexonJOTR01000065 126414..126563 +
id31734id31734Diuraphis noxiaexonJOTR01000065 126632..127002 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
XP_015363108.1cds3533Diuraphis noxiaCDSJOTR01000065 126632..126909 +


Sequences
The following sequences are available for this feature:

protein sequence of XM_015507622.1

>rna3633 ID=rna3633|Name=XM_015507622.1|organism=Diuraphis noxia|type=polypeptide|length=201bp
MANNNNKMKMVLQKMTFSRIIFQRGLHGANKKLDSLIRVNHAGELGADRI
YAGQMAVLGNSSVGPKIKEMWEQEKAHRYKFEQLINQNRVRPSLLFPLWY
CAGYVLGAGTALMGPKAAMACTVAVETVIVEHYNDQLRHLMDDPKSDKEL
LETIKKFRDEEQEHHDCGMDHGAEQAPFYDALTKVIKTGCKVAIEVAKRV
.
back to top

mRNA from alignment at JOTR01000065:123993..127002+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3633 ID=rna3633|Name=XM_015507622.1|organism=Diuraphis noxia|type=mRNA|length=3010bp|location=Sequence derived from alignment at JOTR01000065:123993..127002+ (Diuraphis noxia)
attgatgtttWTWCCGCgcttaatgatataatattattaaatggtaataa taataataatattattgtgcttgTTGCGATAACAGTTTATAGTAGTAGTC GTCGGCGTTGTCGTCGTCTTTGTCGTTGTCGCAATTAAATACGCGTCTGC GCACCGACCCGTTCACGTCACTTTCGGATACTTCGCCGCCCCGGCGACAC GTCGCGCCACTCGAGAGTCGAGACGGTTCTCGCACCAGTACGGCCGTATC TACCGCGAAAAACCGTTCGCCGAAAACCGCGGGCGTCAGAACGTTTTCCC GTTCAATCGTCGTTTCGACACCCAAACAGCGGTGTGTGTGCAAGGCGTAG GCACGCGCGAGCGTCGTAGTTATTAGGCCGTGCGGACCCGTACGTGTCGG TGGTTACTAGTTTTGCGCGCGTCAAGTGCTGAGCCGCGGTAGCCAGGAGA CATTTTGWCACTCGACATACGCCATTGGTGCGCGCGCCCCGCCATCTRCT GGTAAATTAGCTCAGTCTCGGTTTTGCTTTACCCACCAAATTTCGAAATC GTGTGCAGAGTACCGTTTTCTTCGGTCTTAGCACCGTTTGTSACGACCTT CCAACTTACCTTCTCCGAATTAATGATCTATTATTTATTCGCTGTACTGT AGTAGTCTTATCTACAAATTACTAGGCATTCATATttcgaaatataatta taaagtgcTGTCTGGTtgacatcatattaataattagcttTGACTGCTTT GAGGTCACATCAAATCAGAAgtattaagatattaattaatgtgGATGGtc gttattataacattatacaatcaACTGATTTGATgctaattagaaattat tatttacactttgggagatacattttaaatgttttcaatttgatagataa ataatttattattgtacatttaaaacttGTAAAGTGTAaccaattatttt gttaaattaattcttTCCATTTTCTAAAGATAAGTGAAgtgcttatttta attttaaatatttgtgtaaagCTAGGTAGTTGAACATTTTTAGTAACTTT TTTATTGGTTAGTTGTTGATAACTTGCACATAAGTCccaatagatacata ttttaagtatactttaCAAATCACagatcatttatttatacatttattaa cacTTAAATTGCATACTAATTGTACAGTCAATGCCATCTATGATGACTTT TAGGCACTTCATCATAATCATccatatcatcatcatcgtcttCACAAGAA TGTGGATATTCTGACCTATGATTATCGTGTTTTGGCTTgagtatttctaa ataaaaaataaaaccaattaataattttacaacgtaaacaaacagttttt aaatttacttcttTGGCAAAATTTCCCAAACCATCCTTGTTGACAACGAC ATATTCTATTTGCTGTACAATATCCATGATGGCAGGGCCTCttgcaatta taatattgttttattggttGACCAATTTCACAATGGTCTCCTTGAAAACC AAATATACATCTACATTTGTTCACTCCTTTACATTTTCCACCATTTAAAC ATGGTATAATACATTTAGCTGAAATTGTTAACTTTCTATTAGaactaatc attttttaaagtagATAAACTTACAGTATTCACATCGTAAACCATAGAAC CCCTTAGGACATTGGCATGTGtctttttgtatacattttccYCCATTTAA ACACTTTTCTGCACAAATAcctgaaatgtataaaaaaaaaaaatgatttt tttRttttaaacaaaattctatattacactatatgttacaattacaacaa taaacataaaaggacgtcacacccgcatgtgttgtcttcgtYttacacac gtacgacataTYAGATTTCTGATCACTACTATCAATAGGATGCTATCGGT ATAGACATTAGAATGAATTagcctattataaaacttaggtaagaacatta tcgtGTTCGCTCGATctgttttcacaatattttaatttttaagtgagtaa tgagtattttaaaatattaatattttacatacggAGACAGGGACAATATA TGCAGGTGCGACATCCTCATAAGTGATAAGAGTTAGAAAATAAAGATTAG ACAGGAGGAAAAGACCTCCCATCGGAAGTACTWCAagcaaaaaatatgat taattttttttaaatgttatttttgattataggctaacaataacaacaaa atgaAAATGGTTCTGCAAAAAATGACATTTTCCAGAATAATTTTCCAACG AGGATTGCATGGTGCTAACAAAAAATTAGATAGTCTCATAAGAGTTAATC ATGCTGGAGAACTTGGAGCTGATCGTATATATGCAGGACAGATGGCagta ttaggtatgtaaaaaatatgtattattcacATTTTATCAGTTGTTGATCT TAattatttgatcatttttaGGAAACAGTAGTGTAGGTCCAAAGATTAAA GAGATGTGGGAACAAGAAAAAGCGCACAGGTATAAATTTGAACAACTTAT AAACCAAAATAGAGTACGGCCATCACTGTTATTTCCTTTATGGTATTGTG CTGGCTATGTACTTGGAgctggtaaatattttaatacaaagataattgaa tctaaaaatgtttaattaatataaaaatcatatttataggtacagCACTA ATGGGTCCTAAAGCTGCTATGGCTTGCACTGTTGCTGTAGAAACTGTTAT CGTAGAACACTACAATGATCAATTACGACACCTRATGGATGATCCCAAAT CTGACAAAGAGCTTCTTGAAACCATCAAAAAGTTTAGAGATGAAGAACAA GAACATCATGATTGTGGTATGGATCATGGGGCTGAGCAAGCTCCATTTTA TGATGCATTAACAAAAGTCATCAAAACTGGGTGCAAAGTAGCTATTGAAG TAGCAAAAAGAGTGTGAATTTATCTCCTATATGATATCAgattataataa ctatgattaaatgtttaaattacctaaaatatatttttaaagaataaata tttttattaa
back to top

Coding sequence (CDS) from alignment at JOTR01000065:123993..127002+

>rna3633 ID=rna3633|Name=XM_015507622.1|organism=Diuraphis noxia|type=CDS|length=603bp|location=Sequence derived from alignment at JOTR01000065:123993..127002+ (Diuraphis noxia)
gtacagCACTAATGGGTCCTAAAGCTGCTATGGCTTGCACTGTTGCTGTA
GAAACTGTTATCGTAGAACACTACAATGATCAATTACGACACCTRATGGA
TGATCCCAAATCTGACAAAGAGCTTCTTGAAACCATCAAAAAGTTTAGAG
ATGAAGAACAAGAACATCATGATTGTGGTATGGATCATGGGGCTGAGCAA
GCTCCATTTTATGATGCATTAACAAAAGTCATCAAAACTGGGTGCAAAGT
AGCTATTGAAGTAGCAAAAAGAGTGTGAGAAACAGTAGTGTAGGTCCAAA
GATTAAAGAGATGTGGGAACAAGAAAAAGCGCACAGGTATAAATTTGAAC
AACTTATAAACCAAAATAGAGTACGGCCATCACTGTTATTTCCTTTATGG
TATTGTGCTGGCTATGTACTTGGAgctggctaacaataacaacaaaatga
AAATGGTTCTGCAAAAAATGACATTTTCCAGAATAATTTTCCAACGAGGA
TTGCATGGTGCTAACAAAAAATTAGATAGTCTCATAAGAGTTAATCATGC
TGGAGAACTTGGAGCTGATCGTATATATGCAGGACAGATGGCagtattag
atg
back to top