rna3664 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameXM_015507614.1
Unique Namerna3664
TypemRNA
OrganismDiuraphis noxia (Russian wheat aphid)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
JOTR01000065contigJOTR01000065:654892..655882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)2016-03-02
Properties
Property NameValue
Transcript idXM_015507614.1
Productdihydrofolate reductase
Model evidenceSupporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
GeneLOC107161272
GbkeymRNA
Cross References
External references for this mRNA
DatabaseAccession
GenbankXM_015507614.1
GeneID107161272
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
LOC107161272gene2476Diuraphis noxiageneJOTR01000065 654892..655882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
XM_015507614.1rna3664Diuraphis noxiapolypeptideJOTR01000065 654969..655523 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
id32016id32016Diuraphis noxiaexonJOTR01000065 654892..655882 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
XP_015363100.1cds3567Diuraphis noxiaCDSJOTR01000065 654969..655523 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>rna3664 ID=rna3664|Name=XM_015507614.1|organism=Diuraphis noxia|type=mRNA|length=991bp|location=Sequence derived from alignment at JOTR01000065:654892..655882+ (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.  
tgttaaaaaaataaaaatttaacttaattcttattaaaatttactattat
tataaatcttttatttttgatactgaTATGAATCAAACGGATAATATGGG
TTACAGGGTTATAGCTGCTGTTTCAAAGAATGGAGGTATTGGCTACAAAG
GTAATTTACCATGGAAACTTAAAAAGGAAATGGAATATTTCAATCGTATG
ACTACTCTGGTAAATCAAAAAGGCGTTMAAAATGCTGTTATTATGGGTCG
CTGTACTTGGCAATCAATTCCAGATAAATATAGACCACTTAAAGGACGAA
TAAATGTAGTAATCTCCAAAACTTTAAACAGTGTTCCGGAAGGTGTTTTA
TTATATCCAAAAMTTGAAGAAgcttttaaatcattatatttaaatgatca
tATTGAAAACCTTTGGGTAATTGGTGGTTCAGGTTTGTACAATGAAGctg
taaaagataaaaattgcaaaaaattatttattacaaaaattgatCAGGAA
TACTTGTGTGATACTTTCTTTCCTGATTTTGACCCTAAAGAATTTGAAGA
ATCAAATGAAGCTAATGTTCCTAAAGGAATTCAAGAAGAAAAtggtatta
aatatgaatttaaagtatttaagaggttgtgatgaaaaatatataggtat
ttaaagttattgATATATGAATAATAGCCTAAGGTATCTATGTAATtgtg
aatatataattatattattcataaataaaattaatattttatactttttc
tcCTGATAATgcttattttgagtttttaattttagtctaaaGGTTCCATC
TTACTTATGTCCTGTCCTTTAGTAAAAGCTTAAGTAATGAGAGTGATTGG
TTGTATAgcatcattattgtatatttatatRTGATTATTAAAAGTGGCAG
GGTGTGATTAActcattgtataatttttcattRCAACTAATTATAAAAKT
AATGCTTTTGCATATCAagtgttttcatttaaattgcACCC
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protein sequence of XM_015507614.1

>rna3664 ID=rna3664|Name=XM_015507614.1|organism=Diuraphis noxia|type=polypeptide|length=185bp
MNQTDNMGYRVIAAVSKNGGIGYKGNLPWKLKKEMEYFNRMTTLVNQKGV
XNAVIMGRCTWQSIPDKYRPLKGRINVVISKTLNSVPEGVLLYPKXEEAF
KSLYLNDHIENLWVIGGSGLYNEAVKDKNCKKLFITKIDQEYLCDTFFPD
FDPKEFEESNEANVPKGIQEENGIKYEFKVFKRL.
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mRNA from alignment at JOTR01000065:654892..655882+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3664 ID=rna3664|Name=XM_015507614.1|organism=Diuraphis noxia|type=mRNA|length=991bp|location=Sequence derived from alignment at JOTR01000065:654892..655882+ (Diuraphis noxia)
tgttaaaaaaataaaaatttaacttaattcttattaaaatttactattat tataaatcttttatttttgatactgaTATGAATCAAACGGATAATATGGG TTACAGGGTTATAGCTGCTGTTTCAAAGAATGGAGGTATTGGCTACAAAG GTAATTTACCATGGAAACTTAAAAAGGAAATGGAATATTTCAATCGTATG ACTACTCTGGTAAATCAAAAAGGCGTTMAAAATGCTGTTATTATGGGTCG CTGTACTTGGCAATCAATTCCAGATAAATATAGACCACTTAAAGGACGAA TAAATGTAGTAATCTCCAAAACTTTAAACAGTGTTCCGGAAGGTGTTTTA TTATATCCAAAAMTTGAAGAAgcttttaaatcattatatttaaatgatca tATTGAAAACCTTTGGGTAATTGGTGGTTCAGGTTTGTACAATGAAGctg taaaagataaaaattgcaaaaaattatttattacaaaaattgatCAGGAA TACTTGTGTGATACTTTCTTTCCTGATTTTGACCCTAAAGAATTTGAAGA ATCAAATGAAGCTAATGTTCCTAAAGGAATTCAAGAAGAAAAtggtatta aatatgaatttaaagtatttaagaggttgtgatgaaaaatatataggtat ttaaagttattgATATATGAATAATAGCCTAAGGTATCTATGTAATtgtg aatatataattatattattcataaataaaattaatattttatactttttc tcCTGATAATgcttattttgagtttttaattttagtctaaaGGTTCCATC TTACTTATGTCCTGTCCTTTAGTAAAAGCTTAAGTAATGAGAGTGATTGG TTGTATAgcatcattattgtatatttatatRTGATTATTAAAAGTGGCAG GGTGTGATTAActcattgtataatttttcattRCAACTAATTATAAAAKT AATGCTTTTGCATATCAagtgttttcatttaaattgcACCC
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Coding sequence (CDS) from alignment at JOTR01000065:654892..655882+

>rna3664 ID=rna3664|Name=XM_015507614.1|organism=Diuraphis noxia|type=CDS|length=555bp|location=Sequence derived from alignment at JOTR01000065:654892..655882+ (Diuraphis noxia)
ATGAATCAAACGGATAATATGGGTTACAGGGTTATAGCTGCTGTTTCAAA
GAATGGAGGTATTGGCTACAAAGGTAATTTACCATGGAAACTTAAAAAGG
AAATGGAATATTTCAATCGTATGACTACTCTGGTAAATCAAAAAGGCGTT
MAAAATGCTGTTATTATGGGTCGCTGTACTTGGCAATCAATTCCAGATAA
ATATAGACCACTTAAAGGACGAATAAATGTAGTAATCTCCAAAACTTTAA
ACAGTGTTCCGGAAGGTGTTTTATTATATCCAAAAMTTGAAGAAgctttt
aaatcattatatttaaatgatcatATTGAAAACCTTTGGGTAATTGGTGG
TTCAGGTTTGTACAATGAAGctgtaaaagataaaaattgcaaaaaattat
ttattacaaaaattgatCAGGAATACTTGTGTGATACTTTCTTTCCTGAT
TTTGACCCTAAAGAATTTGAAGAATCAAATGAAGCTAATGTTCCTAAAGG
AATTCAAGAAGAAAAtggtattaaatatgaatttaaagtatttaagaggt
tgtga
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