rna3681 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameXM_015507616.1
Unique Namerna3681
TypemRNA
OrganismDiuraphis noxia (Russian wheat aphid)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
JOTR01000065contigJOTR01000065:805597..808382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)2016-03-02
Properties
Property NameValue
Transcript idXM_015507616.1
Producttetratricopeptide repeat protein 4
Model evidenceSupporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
GeneLOC107161274
GbkeymRNA
Cross References
External references for this mRNA
DatabaseAccession
GenbankXM_015507616.1
GeneID107161274
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
LOC107161274gene2487Diuraphis noxiageneJOTR01000065 805597..808382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
XM_015507616.1rna3681Diuraphis noxiapolypeptideJOTR01000065 805715..808382 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
id32193id32193Diuraphis noxiaexonJOTR01000065 805597..805728 +
id32194id32194Diuraphis noxiaexonJOTR01000065 806372..806516 +
id32195id32195Diuraphis noxiaexonJOTR01000065 806614..806903 +
id32196id32196Diuraphis noxiaexonJOTR01000065 806980..807172 +
id32197id32197Diuraphis noxiaexonJOTR01000065 807242..807359 +
id32198id32198Diuraphis noxiaexonJOTR01000065 807442..807598 +
id32199id32199Diuraphis noxiaexonJOTR01000065 808199..808382 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
XP_015363102.1cds3584Diuraphis noxiaCDSJOTR01000065 808199..808382 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>rna3681 ID=rna3681|Name=XM_015507616.1|organism=Diuraphis noxia|type=mRNA|length=1219bp|location=Sequence derived from alignment at JOTR01000065:805597..808382+ (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.  
acattagtatttcataatattcaaaaatgtaatattttgttttttaaatt
ttgaacattgAACATCCTACTATCTAAAGCACTTTGTAAAGACTACCTAA
CATTATTTTACAacgaaaatggaaaaaatattagaatCGAGTGGCTCTAA
GAAGCCAATGACGGATGAGGAACGTGAAAAACTTGCTAGTCGTCTCGATG
AagatttagataattttatagaCAATCTACAGAAAACACCATATAAAGAT
GGTTGGAAAGAAGAGACTTGGCGTGaggaaaTGGAAAAGCATCCATTTTT
TATGACTAAACCCCCTGAACCAGAAGACCAATTGTCTCCCTTAGTTGAGG
GATTGCAAAATCTTAGATATGATCCAGATGATAACACTCCCGAAGAGTTG
GCAACAAAACATAAGGATGacggaaattttaattttaagtgtcGTAAATA
TAAATTGGCCATAATGTCATATCAAGAAGGCCTTAAGTTAGATTTTCAAA
ACAATGATCTCCGTGctcaaatgtttaataatacgtctgcttcacattat
tttttaaaaaattttagatcAAGTTTGATAGCTGCTGAACAAGCGCTAAA
ATTGAAACCAGACTATGAAAAAACCATATTAAGGGCAATAAATTGTTGCA
TTCAGTTGAAAGAGTTTGATAAATGTTTAGatttttgtgataaatatttg
aagtttgTACCAGAGGATAGtaatatcatgaaaataaaaaaagaagcaAT
CAAATCTAAAAAGATCATGGAGatggaaaaaagaaaaattacaaaGATTC
AGAAACAAAAAGAAGCGGATCAAGCTAAGTTGTTATTTGAgcttaataaa
agaaaattgcaCATAGTTGGCAAAAATGATGGTCCAATTAAAGAATTAGC
AATACTCGATCCAAGAGTGCCTGGTTTAGTACAGCCAGTACATTTAGTCG
AAAATCGTCTTGTGTGGcctgttgtttttttatatccTGAATATAAAACT
TCTGATATGGTCCAAGAGTTTTATGAAGATTCTACATTTTATAGTCACTT
AGTAGAAATGTTTTCTGAAAGACCAGAATGGGATGTGGATGGAAAATACA
ATGCGGATGtagttaatgtttattttgaaattgtaaataaatataaaact
ggcACCAAAGTCACAAAGATAGATTCAAAAACATGCACATTGTTCGAAGC
ATTGACAATATTAaggtaa
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protein sequence of XM_015507616.1

>rna3681 ID=rna3681|Name=XM_015507616.1|organism=Diuraphis noxia|type=polypeptide|length=367bp
MEKILESSGSKKPMTDEEREKLASRLDEDLDNFIDNLQKTPYKDGWKEET
WREEMEKHPFFMTKPPEPEDQLSPLVEGLQNLRYDPDDNTPEELATKHKD
DGNFNFKCRKYKLAIMSYQEGLKLDFQNNDLRAQMFNNTSASHYFLKNFR
SSLIAAEQALKLKPDYEKTILRAINCCIQLKEFDKCLDFCDKYLKFVPED
SNIMKIKKEAIKSKKIMEMEKRKITKIQKQKEADQAKLLFELNKRKLHIV
GKNDGPIKELAILDPRVPGLVQPVHLVENRLVWPVVFLYPEYKTSDMVQE
FYEDSTFYSHLVEMFSERPEWDVDGKYNADVVNVYFEIVNKYKTGTKVTK
IDSKTCTLFEALTILR.
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mRNA from alignment at JOTR01000065:805597..808382+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3681 ID=rna3681|Name=XM_015507616.1|organism=Diuraphis noxia|type=mRNA|length=2786bp|location=Sequence derived from alignment at JOTR01000065:805597..808382+ (Diuraphis noxia)
acattagtatttcataatattcaaaaatgtaatattttgttttttaaatt ttgaacattgAACATCCTACTATCTAAAGCACTTTGTAAAGACTACCTAA CATTATTTTACAacgaaaatggaaaaaatattgtaagtatgatcattata attaaattgtcttcatgttataaaatgattacttacacaatattatattg tatatattttagatgttcataatatttattatttatttattgttacccGT GTTTGGTACTTTTTAgccgttataattatttaaatagttacttaaattat tcattgaacACATTCAAATAAGCTTATAAAAGCAGTTAAATTTCTAAAca cttaaaaaacattttaagaataattcatATCTTTAAAAAGTATCTTAAAT TTTTGGTTTCTGagaatatataacttaaaatttatgcATTTTCAGAAaag taaatttcaatttttttaataattaggaaagaaaaattaattaagtaaaa aaattattttaaaacgtgtMATACCTATGTTCTAATAAAATAgagatatg aaaataaaatcagaaaaaaactagaaaaaagcaattaaaacctccaaaat aagcaaaaataatcattttaaatttttaaatgtcatgtTATAACATGGTT TAAATTTCCAGAGCACTGCTAGATTTTATGTTAATCCAAATGAATTAGTC AATGCTTGAAATCCCTCACCTTGATAATTACTGATACAATTTTCTTTATA actttatcaatataattttttttagagaatCGAGTGGCTCTAAGAAGCCA ATGACGGATGAGGAACGTGAAAAACTTGCTAGTCGTCTCGATGAagattt agataattttatagaCAATCTACAGAAAACACCATATAAAGATGGTTGGA AAGAAGAGACTTGGCGTGaggtgataataatttatttttataattatcta gcttaaatacttttaactatcatttaatctttttaattatgtattgttta tttttatttttatttaggaaaTGGAAAAGCATCCATTTTTTATGACTAAA CCCCCTGAACCAGAAGACCAATTGTCTCCCTTAGTTGAGGGATTGCAAAA TCTTAGATATGATCCAGATGATAACACTCCCGAAGAGTTGGCAACAAAAC ATAAGGATGacggaaattttaattttaagtgtcGTAAATATAAATTGGCC ATAATGTCATATCAAGAAGGCCTTAAGTTAGATTTTCAAAACAATGATCT CCGTGctcaaatgtttaataatacgtctgcttcacattattttttaaaaa attttaggtattttatttaattagtgtttaatatattatgtaatttaaac atattgtatatttcttttatataatatgtttagatcAAGTTTGATAGCTG CTGAACAAGCGCTAAAATTGAAACCAGACTATGAAAAAACCATATTAAGG GCAATAAATTGTTGCATTCAGTTGAAAGAGTTTGATAAATGTTTAGattt ttgtgataaatatttgaagtttgTACCAGAGGATAGtaatatcatgaaaa taaaaaaagaagcaATCAAATCTAAAGTAAATTTGTGTAGTTAATAATTA AGActgatattattaggtatttattgtaatgtttaaaaTGGTTAGAAGAT CATGGAGatggaaaaaagaaaaattacaaaGATTCAGAAACAAAAAGAAG CGGATCAAGCTAAGTTGTTATTTGAgcttaataaaagaaaattgcaCATA GTTGGCAAAAATGGTAgttgtactttataatatttaatattgtattttgc atatatgatattaattttatttatttgttgatgaTTACACTTTAGATGGT CCAATTAAAGAATTAGCAATACTCGATCCAAGAGTGCCTGGTTTAGTACA GCCAGTACATTTAGTCGAAAATCGTCTTGTGTGGcctgttgtttttttat atccTGAATATAAAACTTCTGATATGGTCCAAGAGTTTTATGAAGATTCT ACGTCAGTATATTTTTGTCTATACacttatactttaatataatttaatat ttaaagagaAATTttctaactaaaatatattaaaactaaataatgtagta cttattatacatttttttcagttaacctaacttaataaatattttaataa taatttatttttcaaataatatttctataagctgggatattaattattag tgatAGGCAACAATatcgataatttaatataataccaatattgtGACAAA TTTTTGATATCAATATCCAAAATTATGTCCTTGCCCATCACTATTAATTA TGTTCCTATAGTTTTGTGTGTTGAATAAtgcattttgtaaaataaatttt taaaaagataaaaaaacagtaaattattaaaaaaattaagaaccagtagg gtatattattttttctaaatatttatgtcataatttaattcattagtttt tgattctaaaatttagatttttcaaattataagttatatgttgattaata tatattaaataatgtttttaactttaaaacaatagtttttagaaatttta tcgATTCATCCaatttttatgttgtaataattgttttaatatatttgtct aGATTTTATAGTCACTTAGTAGAAATGTTTTCTGAAAGACCAGAATGGGA TGTGGATGGAAAATACAATGCGGATGtagttaatgtttattttgaaattg taaataaatataaaactggcACCAAAGTCACAAAGATAGATTCAAAAACA TGCACATTGTTCGAAGCATTGACAATATTAaggtaa
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Coding sequence (CDS) from alignment at JOTR01000065:805597..808382+

>rna3681 ID=rna3681|Name=XM_015507616.1|organism=Diuraphis noxia|type=CDS|length=1101bp|location=Sequence derived from alignment at JOTR01000065:805597..808382+ (Diuraphis noxia)
atggaaaaaatattagaatCGAGTGGCTCTAAGAAGCCAATGACGGATGA
GGAACGTGAAAAACTTGCTAGTCGTCTCGATGAagatttagataatttta
tagaCAATCTACAGAAAACACCATATAAAGATGGTTGGAAAGAAGAGACT
TGGCGTGaggaaaTGGAAAAGCATCCATTTTTTATGACTAAACCCCCTGA
ACCAGAAGACCAATTGTCTCCCTTAGTTGAGGGATTGCAAAATCTTAGAT
ATGATCCAGATGATAACACTCCCGAAGAGTTGGCAACAAAACATAAGGAT
GacggaaattttaattttaagtgtcGTAAATATAAATTGGCCATAATGTC
ATATCAAGAAGGCCTTAAGTTAGATTTTCAAAACAATGATCTCCGTGctc
aaatgtttaataatacgtctgcttcacattattttttaaaaaattttaga
tcAAGTTTGATAGCTGCTGAACAAGCGCTAAAATTGAAACCAGACTATGA
AAAAACCATATTAAGGGCAATAAATTGTTGCATTCAGTTGAAAGAGTTTG
ATAAATGTTTAGatttttgtgataaatatttgaagtttgTACCAGAGGAT
AGtaatatcatgaaaataaaaaaagaagcaATCAAATCTAAAAAGATCAT
GGAGatggaaaaaagaaaaattacaaaGATTCAGAAACAAAAAGAAGCGG
ATCAAGCTAAGTTGTTATTTGAgcttaataaaagaaaattgcaCATAGTT
GGCAAAAATGATGGTCCAATTAAAGAATTAGCAATACTCGATCCAAGAGT
GCCTGGTTTAGTACAGCCAGTACATTTAGTCGAAAATCGTCTTGTGTGGc
ctgttgtttttttatatccTGAATATAAAACTTCTGATATGGTCCAAGAG
TTTTATGAAGATTCTACATTTTATAGTCACTTAGTAGAAATGTTTTCTGA
AAGACCAGAATGGGATGTGGATGGAAAATACAATGCGGATGtagttaatg
tttattttgaaattgtaaataaatataaaactggcACCAAAGTCACAAAG
ATAGATTCAAAAACATGCACATTGTTCGAAGCATTGACAATATTAaggta
a
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