rna377 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameXM_015507634.1
Unique Namerna377
TypemRNA
OrganismDiuraphis noxia (Russian wheat aphid)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
JOTR01000004contigJOTR01000004:953373..954937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)2016-03-02
Properties
Property NameValue
Transcript idXM_015507634.1
ProductRNA-binding protein 1-like, transcript variant X1
Model evidenceSupporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
GeneLOC107161281
GbkeymRNA
Cross References
External references for this mRNA
DatabaseAccession
GenbankXM_015507634.1
GeneID107161281
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
LOC107161281gene251Diuraphis noxiageneJOTR01000004 953373..954939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
XM_015507634.1rna377Diuraphis noxiapolypeptideJOTR01000004 953394..953606 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
XP_015363120.1cds371Diuraphis noxiaCDSJOTR01000004 953394..953606 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
id3305id3305Diuraphis noxiaexonJOTR01000004 953373..953621 -
id3304id3304Diuraphis noxiaexonJOTR01000004 954353..954937 -


Sequences
The following sequences are available for this feature:

protein sequence of XM_015507634.1

>rna377 ID=rna377|Name=XM_015507634.1|organism=Diuraphis noxia|type=polypeptide|length=71bp
MSKHREWDPTCKVYIGNLKSNANKYEIEDLFTKYGPLKNIWIARNPPGFA
FIEYEDPRDAEDAVRGLDGT.
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mRNA from alignment at JOTR01000004:953373..954937-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna377 ID=rna377|Name=XM_015507634.1|organism=Diuraphis noxia|type=mRNA|length=1565bp|location=Sequence derived from alignment at JOTR01000004:953373..954937- (Diuraphis noxia)
TAAGTTTCCCTCACTGATCAATAGCTAAATATAGAGTAAAATATTACTCT ATGAGCTAAATGAACCTTGATAAGGTTACCTTATCAGCAGGTTATGTAAC AGATAATTATAACASGATAAATTGATAATATTCCGTTATGGTGCTGACAT GAGGAAGCCATCTTGTTTTTCTAACATTCAACTCTACAAATTACAATATT CTTCGTTTCTACATGACTATTGACTACATACTACATAGGTAGTACATTGA CCATTGAGATATTGAGAAMATTCTACTTAGTACTTTCTACAARCGTCAAG CATTGTTCTAATGTTCTGCGACACAACAAGTCAACAACTGTATGATTCAA GTATTCAAGTCAAAAACTTACTATTCAACTACTTAATTCTTTAGTGCTTA AAACTAAATYCCAAACGTCCGTTTTTAATATTTAGTGTATGATTCATTTT CTTGCAATGGTTAACGATTAAATTTACTAACTTGTCTGTGCCCTTTGGTC TTTTGGCCCTCGTGGCTCACCGGCTTGTACTCAATTTTCTTTAACATAAG CCATTTCTCAACGTCGCCCGTTATTGAAACAACACGTGAGTACATGACTT GTGTCAACTATTTAGTGAAAATTTCCATAATATAGTTTTACATTCTTCAA CCTTGTAACATTGGCATGTTTACTATTAAGTAACCATTAACGGTTTTAGT CCCTGTATATTTTTTTTTATAATTAATTCTAGGTAATACATCTAACATAT CCATTATTATCTGAAATCATAACTCTTAAGGTTATACTAACTGCTGTATA TGTTGTGAATAATTAGTTTAAATATTCTTTGAGGTAAGTACTTTTATTAT GTTTATATAGTTTATGTTATAAAATAATATTTACTGAAGTAACAACTTAA ATWAAGCAATCATTAAAAAGAATCTTTAAATGTTAATGCATTTTTTATTG TTTTTTTAATGTGTACATATTATACTTACTTTCTAGACAATTGTTTTATA TTTACATATAAATTGTTTGTTGTCATATAATTGTCGTTATTATTATTTGG ATATAACTTTCTTTTAATCAAAATGGGTTAAATGCTAGAAAATCTAATAT ACATAATATGTAAGACGATGAATAAAACACATGTACTTTTGAAATTAATT TCTTTCAATGGTGTCAGAACACGAATAAGAGGTGCTATACATTTTCAATA TAGCTTGAAGATATAAAATACATAATAGCAAGATAAACATATCCAAAAAA CCATTAAAAAATGACAATATCAGTAGAGTTATATATTGTACATAATCAAA ATATTTCTGTTTATAGATAGAAAACTAAAAAATGTCCAAACACCGCGAAT GGGATCCAACTTGCAAAGTATACATTGGTAATTTGAAAAGCAATGCCAAT AAATACGAAATAGAAGATTTATTTACCAAGTATGGCCCATTGAAAAATAT TTGGATAGCAAGAAATCCTCCWGGTTTTGCATTCATAGAATATGAAGATC CACGCGATGCAGAAGATGCTGTCCGTGGTTTAGATGGAACGTAAGACATT TAACATTATATTATA
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Coding sequence (CDS) from alignment at JOTR01000004:953373..954937-

>rna377 ID=rna377|Name=XM_015507634.1|organism=Diuraphis noxia|type=CDS|length=213bp|location=Sequence derived from alignment at JOTR01000004:953373..954937- (Diuraphis noxia)
ATGTCCAAACACCGCGAATGGGATCCAACTTGCAAAGTATACATTGGTAA
TTTGAAAAGCAATGCCAATAAATACGAAATAGAAGATTTATTTACCAAGT
ATGGCCCATTGAAAAATATTTGGATAGCAAGAAATCCTCCWGGTTTTGCA
TTCATAGAATATGAAGATCCACGCGATGCAGAAGATGCTGTCCGTGGTTT
AGATGGAACGTAA
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