rna3853 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameXM_015507858.1
Unique Namerna3853
TypemRNA
OrganismDiuraphis noxia (Russian wheat aphid)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
JOTR01000070contigJOTR01000070:320523..321382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)2016-03-02
Properties
Property NameValue
GbkeymRNA
GeneLOC107161445
Model evidenceSupporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
ProductBET1 homolog, transcript variant X2
Transcript idXM_015507858.1
Cross References
External references for this mRNA
DatabaseAccession
GeneID107161445
GenbankXM_015507858.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
LOC107161445gene2617Diuraphis noxiageneJOTR01000070 320523..321618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
XM_015507858.1rna3853Diuraphis noxiapolypeptideJOTR01000070 320533..320880 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
XP_015363344.1cds3754Diuraphis noxiaCDSJOTR01000070 320533..320880 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
id33651id33651Diuraphis noxiaexonJOTR01000070 320523..320885 -
id33650id33650Diuraphis noxiaexonJOTR01000070 321302..321382 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>rna3853 ID=rna3853|Name=XM_015507858.1|organism=Diuraphis noxia|type=mRNA|length=444bp|location=Sequence derived from alignment at JOTR01000070:320523..321382- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.  
TCGTTACTTATATTGTTTCTATATTAGTTTATAATTGTCTTTCTTAAAAT
TAATAAAGTTGTTTTGCTAAGGTATTCAAAGATAAAATGATGCGAAGAGC
TCACATAAGAGATTATTATGATCCACCGCCTTCAAAGAGTTTGCATGGTA
GCGAGCTTATTCAAATAGAAGATGAAGATTTGCCAGAACATCTAAAAGAT
AAGGTGAATATTTTGAAGTCTCTCTCAATTGATATCGGTTCAGAATTAAA
ATCCCAGGACCGCTTACTAAGAGATATGGATTACGATTTGGAAACCACCG
GAGGATTTTTGAGTAACACACTTGGTCGAGTTACAAGACTTTATGGTTAT
AGTGGTGGCTACAACAAACTATACCTAATCTTATTTAGTTTGATAGTTTT
TTTTATATTATACATATTTTTAAAATTGAAATAAAAATCTGTAA
back to top

protein sequence of XM_015507858.1

>rna3853 ID=rna3853|Name=XM_015507858.1|organism=Diuraphis noxia|type=polypeptide|length=116bp
MMRRAHIRDYYDPPPSKSLHGSELIQIEDEDLPEHLKDKVNILKSLSIDI
GSELKSQDRLLRDMDYDLETTGGFLSNTLGRVTRLYGYSGGYNKLYLILF
SLIVFFILYIFLKLK.
back to top

mRNA from alignment at JOTR01000070:320523..321382-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3853 ID=rna3853|Name=XM_015507858.1|organism=Diuraphis noxia|type=mRNA|length=860bp|location=Sequence derived from alignment at JOTR01000070:320523..321382- (Diuraphis noxia)
TCGTTACTTATATTGTTTCTATATTAGTTTATAATTGTCTTTCTTAAAAT
TAATAAAGTTGTTTTGCTAAGGTATTCAAAGGTAACAGAAACTCAAATAC
GTTATTATATTCTAATTACTTATCTTGGTATCTCAATATTTACATCTATC
TTAGTGCGCTATCTGATTTCATATTTATAACCTATGTTAAAAATCATCCA
TCATGGTTCGACCAACAATTACAGGCGCGATTTATATATTTAATTTCAAC
GATACATTATCTTCGACATAGGTACCCACTCTCAATGAGTTGCACATGCA
GCTAGTATTTCTCTCATAAAATATTAAAATATAAGAATCTATTATAGCAA
TCAATGTTTTTTTTTTTTTTTTAAAAGACAAAACTATAAAATACAAATAT
TTTTACAGTTGATGAATTATAAAAGTTTATTTTTAATTTAACTACTATTA
TGAATAAAATTCAAGTAATTAATTGAATTAWTTGTTTATATTTTCAGATA
AAATGATGCGAAGAGCTCACATAAGAGATTATTATGATCCACCGCCTTCA
AAGAGTTTGCATGGTAGCGAGCTTATTCAAATAGAAGATGAAGATTTGCC
AGAACATCTAAAAGATAAGGTGAATATTTTGAAGTCTCTCTCAATTGATA
TCGGTTCAGAATTAAAATCCCAGGACCGCTTACTAAGAGATATGGATTAC
GATTTGGAAACCACCGGAGGATTTTTGAGTAACACACTTGGTCGAGTTAC
AAGACTTTATGGTTATAGTGGTGGCTACAACAAACTATACCTAATCTTAT
TTAGTTTGATAGTTTTTTTTATATTATACATATTTTTAAAATTGAAATAA
AAATCTGTAA
back to top

Coding sequence (CDS) from alignment at JOTR01000070:320523..321382-

>rna3853 ID=rna3853|Name=XM_015507858.1|organism=Diuraphis noxia|type=CDS|length=348bp|location=Sequence derived from alignment at JOTR01000070:320523..321382- (Diuraphis noxia)
ATGATGCGAAGAGCTCACATAAGAGATTATTATGATCCACCGCCTTCAAA
GAGTTTGCATGGTAGCGAGCTTATTCAAATAGAAGATGAAGATTTGCCAG
AACATCTAAAAGATAAGGTGAATATTTTGAAGTCTCTCTCAATTGATATC
GGTTCAGAATTAAAATCCCAGGACCGCTTACTAAGAGATATGGATTACGA
TTTGGAAACCACCGGAGGATTTTTGAGTAACACACTTGGTCGAGTTACAA
GACTTTATGGTTATAGTGGTGGCTACAACAAACTATACCTAATCTTATTT
AGTTTGATAGTTTTTTTTATATTATACATATTTTTAAAATTGAAATAA
back to top