rna3856 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameXM_015507861.1
Unique Namerna3856
TypemRNA
OrganismDiuraphis noxia (Russian wheat aphid)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
JOTR01000070contigJOTR01000070:500511..504069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)2016-03-02
Properties
Property NameValue
GbkeymRNA
GeneLOC107161448
Model evidenceSupporting evidence includes similarity to: 1 Protein
Productuncharacterized LOC107161448
Transcript idXM_015507861.1
Cross References
External references for this mRNA
DatabaseAccession
GeneID107161448
GenbankXM_015507861.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
LOC107161448gene2620Diuraphis noxiageneJOTR01000070 500511..504069 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
XM_015507861.1rna3856Diuraphis noxiapolypeptideJOTR01000070 500511..504069 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
XP_015363347.1cds3757Diuraphis noxiaCDSJOTR01000070 503896..504069 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
id33657id33657Diuraphis noxiaexonJOTR01000070 500511..500825 -
id33656id33656Diuraphis noxiaexonJOTR01000070 503896..504069 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>rna3856 ID=rna3856|Name=XM_015507861.1|organism=Diuraphis noxia|type=mRNA|length=489bp|location=Sequence derived from alignment at JOTR01000070:500511..504069- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGTGAATCGTCTAAATAAACTGACGAATTTCACACCCACCAGCCT
TGTGGATCACAATCCGACCGCGGTCACCCATCCGCCCAATTCGGATATCT
TGGATAAGATCGACGTGAAGAAATTGTTGGACGTGTTGCAGATTCTCAAC
GAGGAAAAATCTGCACAAGTGTCAGAAGCAACGAGTTTACCTTCATCAAC
TGTAGTGAAYGTGGTCCGCGATTTCGACTATTCGAAAGAATGTAAGATCG
ACGAAGATTCGTCGAAAAATCAGGTTACGGAACAGATGATTTTTAACACG
GCATACGACAAAGTATTGGAACATATAAGATTGGTTAACGAAACCATTCA
AAAGAATTACGAATTATTAATGAAGCTTAATATCTTGAAGGGAATGCTTA
TGATGGAAGAAATTAGTGTTCATTCAAAAGAGTCGACACCGTGGATTAAA
TACTTCTCCAAATACAAAAATATTGCTAACAATTATTAA
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protein sequence of XM_015507861.1

>rna3856 ID=rna3856|Name=XM_015507861.1|organism=Diuraphis noxia|type=polypeptide|length=163bp
MPVNRLNKLTNFTPTSLVDHNPTAVTHPPNSDILDKIDVKKLLDVLQILN
EEKSAQVSEATSLPSSTVVNVVRDFDYSKECKIDEDSSKNQVTEQMIFNT
AYDKVLEHIRLVNETIQKNYELLMKLNILKGMLMMEEISVHSKESTPWIK
YFSKYKNIANNY.
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mRNA from alignment at JOTR01000070:500511..504069-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3856 ID=rna3856|Name=XM_015507861.1|organism=Diuraphis noxia|type=mRNA|length=3559bp|location=Sequence derived from alignment at JOTR01000070:500511..504069- (Diuraphis noxia)
ATGCCCGTGAATCGTCTAAATAAACTGACGAATTTCACACCCACCAGCCT
TGTGGATCACAATCCGACCGCGGTCACCCATCCGCCCAATTCGGATATCT
TGGATAAGATCGACGTGAAGAAATTGTTGGACGTGTTGCAGATTCTCAAC
GAGGAAAAATCTGCACAAGTGTCAGTGAGTGACTAGAATTATTGGTAGGA
CGGAGACGGAGTTATATTGTAATAATGTTTAGGTATAATAGGTACATACC
TACCTAGAATAACATAACATATTTTGTAAACTTTCGTTTAGATGAGTGAG
CGAAACGTTATAAGTTCCGTGATGAATGTATTGATTTACAATTATGTACC
TATCTCCGTTTCAATTATTTTTTGTTTTTACTCATACAATAATTCTTATT
TTCACCACAACTAAGATAATATATCGAAAATATTTCAATATTTCTAATAA
GTGCTTGATATTTTACGTAATTCATCAAAATCACGAAGATATGTAAATTG
TTTTGTAGTTAAAAAAAACCCTTAAAATGTTTAATTTTAATACTCTACTT
TCAAAAATTACTGCAAGATTCTTCATAAGATTTTCACTAGAACATATAAG
TTTAGCGTAATAAGCTACATACATTTTTTTATGAGCAATGAAATTCAAAT
GCTATAATAGTATAATGACATTTGGATACGTATTGGTAATAAACTAATAA
CGATTTATTCTCAAACTATTATCGTTATTTTGTTATGGTAAAAAAATATT
AATATTAAAGACTTGAAATATTCCAATATTCTTTAAATATACATTTTCAG
TTGACAGTGAAATTTAAAAAAGTGCTTAGTCTAATTTGAAGCTATTTATT
ATAGTCTTTAGACAATTTGAATTTGTTTCAATAGGTACTGAATCAAAAAA
CTTGAAAATCTGATACAAAGTTATTCATATAATTGATACTGTTTTTGCTT
ATTTAAAAATATCGAAAATACATATTATTCACAATATTTTCATAAGCGTA
TAAAGTATTTTGCTATACACAATTCGTCATAATCACGAACATGTTTAAAC
TATTTTGTATACCTATAATACAAGATCTATGAAATTTTGAAGTTTAATAG
CTAAAACTTATACGCTTAACACATAGTTCTTCATATATTAKTCTTACGGC
CACCCTAAATTTTTATATACATTTGAAGAAGTTTWAGCTTTTACATAATT
AAATAATTAAACATAACTATTTTAATTATTCTGTTGTAATTAAAAATATT
AATCATAGTACGCAGAGACTTGAACATTTTGCCGTTAATACGTTATAATT
ATTTCCTAATCTCAAGAACACTTTAAAATATTTTGACTTATTTTAAGTTG
TTTATATCACGAACCTAGTTTCTACCGAAACTTGTTTTCAAAAATATATT
TTTGACTATAAAAAAATATGAAATATAAATATATATATATATGCTTATTA
TTTACTATTGATATAATTAAGATGWGTAATTTTTGACGCAATATACTCAT
CGGTGAAAAATACTGAGACAAAAATGTATCACAATTCAAAAGTTGCACCA
ACATAATAATCATTGTTAAAGGCTGTCAACTGAATTTTTTAAGTCTGATA
TAGATGGTGAAATTCGTCCAGATCGTGAATTTTGACRAAAATACATTATA
TGGACATTCGCTTTATGAAATGGACATTACCCATGTTCTATGCTTTGTGT
TTTTTATTATTATAAAACTAATTTTCAATTTTTTAAGTTATCAGTAAAAG
TATGCTATTAATAGCGGATGACATGTACAAATAAATAGTAAGGAAGAAAA
ATGTATAGATATAGTTCATTAACTATTGTTTAAGTCAATCAATTAATTAT
TTCGTTAATAAAACAGTATAATAAATCTAGATAGATAGTAAGTATATTTC
ATAATACTTCATCAGTAATGTTGTCGATTATAAAATATAATAAAGGTTTA
TTAAAAGTAAAAATATAATTATTTAATATGATAGAATTTATTGACAACAA
TAATTGTTATATTTTTATTCATAGGTCAATAATCAATATAGAACAGAATA
ATTATAACTCGTAATACTATGACATAATAGAATTATTTATTAGTTTATTA
CTAAATATTATAACAATCTTATTTTATTATAATTACTCAAAGACCAAAGT
ACATAGTACCTATAAGTATTGTCCATTTCATGAAATGGATGTCCATAAAA
ATAATTTTCGTCAAAATTCATGATTTGACGAATTTCACTATCTAGATATC
CAGTTCATGAAAAGATTGATTTCAAAATGTGGTTGTGACATATATTAGTA
GTTAGTTGTAACCCATCAGACATAAAATTCGGTTGACCTGCGCGCGACGC
CGTATAAAAATTGCATAGGCAGCTCAAGCAGCAAGCATCCAAGCTAGGCT
GTAGATACGCCTATTGCTCATAATATTAGCTATTTTATAATTATAATTAT
AATTTTTTTACATAATATTATAATATCTTAACTGTTGAGATATAAACTAT
AATATTTATGAAGTAGAAGCTCTTAATAATAATAATAATGAGTGGATAAT
ATAATATATTATGAGATTTGTTTTTGGCAAAATTAGTTCGATTTACTGTA
TTACTAAAAGAAAAAAATATTAATAGCAAAATAAATACATAATTAAATGT
CTTTAAAATATAGCCATATAGGCTGACTTCAAAACGTTTTAGTAAGTATG
TAATAATATATCATTAAATTCATATCCATCTACGCGTCATATATATTTCA
GTGACCCACTAATAAGTGATGACTGATGAGGTATACACTCTACGCACCTA
TTATTTAATAAATACAACAAAGTGATATCCCAATTTTTTTTAATTTTTAA
ATTAATTCGAAACAACATTTTCCTTTAATATTTATAAATAATAATAAATA
ATTTTACGGTACAAGTTCTTTTCTGGAAAAACTTGAATCAACTAATATTT
TTACTCGATGCCTATTATTATTATTCTAGCTAATATACCGCCTGTATAGG
TAAGTCGTAAGTGCGATAAAGTCTATAGACCTATTATATAGTGTCTACTG
ATACTCCAAAAATCGTTCAGCGAAAACACTTAAAACGGTTATTTTGTATG
AATATTATTAAGACATTCAATACACCTATTATAAATACCACCCAACATAA
CTCTTAATTATAAGGTAAAATCTTCTGTCAATCAATTTTACAAATTATTG
AACTTTTGTAACCTACACATGAACTGTATTATTTTATTATTTAGGAAGCA
ACGAGTTTACCTTCATCAACTGTAGTGAAYGTGGTCCGCGATTTCGACTA
TTCGAAAGAATGTAAGATCGACGAAGATTCGTCGAAAAATCAGGTTACGG
AACAGATGATTTTTAACACGGCATACGACAAAGTATTGGAACATATAAGA
TTGGTTAACGAAACCATTCAAAAGAATTACGAATTATTAATGAAGCTTAA
TATCTTGAAGGGAATGCTTATGATGGAAGAAATTAGTGTTCATTCAAAAG
AGTCGACACCGTGGATTAAATACTTCTCCAAATACAAAAATATTGCTAAC
AATTATTAA
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Coding sequence (CDS) from alignment at JOTR01000070:500511..504069-

>rna3856 ID=rna3856|Name=XM_015507861.1|organism=Diuraphis noxia|type=CDS|length=489bp|location=Sequence derived from alignment at JOTR01000070:500511..504069- (Diuraphis noxia)
ATGCCCGTGAATCGTCTAAATAAACTGACGAATTTCACACCCACCAGCCT
TGTGGATCACAATCCGACCGCGGTCACCCATCCGCCCAATTCGGATATCT
TGGATAAGATCGACGTGAAGAAATTGTTGGACGTGTTGCAGATTCTCAAC
GAGGAAAAATCTGCACAAGTGTCAGAAGCAACGAGTTTACCTTCATCAAC
TGTAGTGAAYGTGGTCCGCGATTTCGACTATTCGAAAGAATGTAAGATCG
ACGAAGATTCGTCGAAAAATCAGGTTACGGAACAGATGATTTTTAACACG
GCATACGACAAAGTATTGGAACATATAAGATTGGTTAACGAAACCATTCA
AAAGAATTACGAATTATTAATGAAGCTTAATATCTTGAAGGGAATGCTTA
TGATGGAAGAAATTAGTGTTCATTCAAAAGAGTCGACACCGTGGATTAAA
TACTTCTCCAAATACAAAAATATTGCTAACAATTATTAA
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