rna3858 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameXM_015507830.1
Unique Namerna3858
TypemRNA
OrganismDiuraphis noxia (Russian wheat aphid)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
JOTR01000070contigJOTR01000070:533553..534107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)2016-03-02
Properties
Property NameValue
GbkeymRNA
GeneLOC107161425
Model evidenceSupporting evidence includes similarity to: 1 Protein
Productuncharacterized LOC107161425
Transcript idXM_015507830.1
Cross References
External references for this mRNA
DatabaseAccession
GeneID107161425
GenbankXM_015507830.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
LOC107161425gene2622Diuraphis noxiageneJOTR01000070 533553..534107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
XM_015507830.1rna3858Diuraphis noxiapolypeptideJOTR01000070 533553..534107 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
id33668id33668Diuraphis noxiaexonJOTR01000070 533553..534107 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
XP_015363316.1cds3759Diuraphis noxiaCDSJOTR01000070 533553..534107 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>rna3858 ID=rna3858|Name=XM_015507830.1|organism=Diuraphis noxia|type=mRNA|length=555bp|location=Sequence derived from alignment at JOTR01000070:533553..534107+ (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAAAAATAAAACGAAGTGTGACAGAAACCGGCCGACCGCCGAGTT
TGATCGGTTTGAATTCCGGGGTGGCCGACTGATCGTCGGTTGCAAGTGTA
CCAGGAACGACGGAATGCAACATGAATGCGAGCGACTAAAGTGTATGGCT
GACCGGCCACTATGTTTAACATATCCGGCGGCCACTTGCTATCCTAGCCG
GCCATGCCCGCTGCGGCCAACAAATTTTCTACAGAACAACGTCCATCGTC
AAGGCAGTGGCGCCATTTCGCAGTCGTCGCATCAACTTATGGTCGGTGGT
GTTGGTACCGTTGGCGGTGTTGTTGATGGTGGTACCGGTGGTAGAGGGAC
CTTTGCCGGAGGGACCGGCGGAAAGTACTCGGCCGGACGTGACGCGCGTT
ACGTATCCTTCAACTCGCATCATATGAGAAAGTGGGCCACCGATCAATAT
GACGACCGTCCCGCACTCAGAAAGTTTTTTCAACCCTGCCACGTCCACTG
TGTGCAATATCGGACGCCCGTAGACGTCTGTACCCGAGACGCCAAgatga
attga
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protein sequence of XM_015507830.1

>rna3858 ID=rna3858|Name=XM_015507830.1|organism=Diuraphis noxia|type=polypeptide|length=185bp
MSKNKTKCDRNRPTAEFDRFEFRGGRLIVGCKCTRNDGMQHECERLKCMA
DRPLCLTYPAATCYPSRPCPLRPTNFLQNNVHRQGSGAISQSSHQLMVGG
VGTVGGVVDGGTGGRGTFAGGTGGKYSAGRDARYVSFNSHHMRKWATDQY
DDRPALRKFFQPCHVHCVQYRTPVDVCTRDAKMN.
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mRNA from alignment at JOTR01000070:533553..534107+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3858 ID=rna3858|Name=XM_015507830.1|organism=Diuraphis noxia|type=mRNA|length=555bp|location=Sequence derived from alignment at JOTR01000070:533553..534107+ (Diuraphis noxia)
ATGTCGAAAAATAAAACGAAGTGTGACAGAAACCGGCCGACCGCCGAGTT
TGATCGGTTTGAATTCCGGGGTGGCCGACTGATCGTCGGTTGCAAGTGTA
CCAGGAACGACGGAATGCAACATGAATGCGAGCGACTAAAGTGTATGGCT
GACCGGCCACTATGTTTAACATATCCGGCGGCCACTTGCTATCCTAGCCG
GCCATGCCCGCTGCGGCCAACAAATTTTCTACAGAACAACGTCCATCGTC
AAGGCAGTGGCGCCATTTCGCAGTCGTCGCATCAACTTATGGTCGGTGGT
GTTGGTACCGTTGGCGGTGTTGTTGATGGTGGTACCGGTGGTAGAGGGAC
CTTTGCCGGAGGGACCGGCGGAAAGTACTCGGCCGGACGTGACGCGCGTT
ACGTATCCTTCAACTCGCATCATATGAGAAAGTGGGCCACCGATCAATAT
GACGACCGTCCCGCACTCAGAAAGTTTTTTCAACCCTGCCACGTCCACTG
TGTGCAATATCGGACGCCCGTAGACGTCTGTACCCGAGACGCCAAgatga
attga
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Coding sequence (CDS) from alignment at JOTR01000070:533553..534107+

>rna3858 ID=rna3858|Name=XM_015507830.1|organism=Diuraphis noxia|type=CDS|length=555bp|location=Sequence derived from alignment at JOTR01000070:533553..534107+ (Diuraphis noxia)
ATGTCGAAAAATAAAACGAAGTGTGACAGAAACCGGCCGACCGCCGAGTT
TGATCGGTTTGAATTCCGGGGTGGCCGACTGATCGTCGGTTGCAAGTGTA
CCAGGAACGACGGAATGCAACATGAATGCGAGCGACTAAAGTGTATGGCT
GACCGGCCACTATGTTTAACATATCCGGCGGCCACTTGCTATCCTAGCCG
GCCATGCCCGCTGCGGCCAACAAATTTTCTACAGAACAACGTCCATCGTC
AAGGCAGTGGCGCCATTTCGCAGTCGTCGCATCAACTTATGGTCGGTGGT
GTTGGTACCGTTGGCGGTGTTGTTGATGGTGGTACCGGTGGTAGAGGGAC
CTTTGCCGGAGGGACCGGCGGAAAGTACTCGGCCGGACGTGACGCGCGTT
ACGTATCCTTCAACTCGCATCATATGAGAAAGTGGGCCACCGATCAATAT
GACGACCGTCCCGCACTCAGAAAGTTTTTTCAACCCTGCCACGTCCACTG
TGTGCAATATCGGACGCCCGTAGACGTCTGTACCCGAGACGCCAAgatga
attga
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