rna3864 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	XM_015507838.1
Unique Name	rna3864
Type	mRNA
Organism	Diuraphis noxia (Russian wheat aphid)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
JOTR01000070	contig	JOTR01000070:653536..661776 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)	2016-03-02

Properties


Property Name	Value
Gbkey	mRNA
Gene	LOC107161433
Model evidence	Supporting evidence includes similarity to: 1 EST, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Product	uncharacterized LOC107161433
Transcript id	XM_015507838.1

Cross References

External references for this mRNA


Database	Accession
GeneID	107161433
Genbank	XM_015507838.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
LOC107161433	gene2627	Diuraphis noxia	gene	JOTR01000070 653536..661776 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
XM_015507838.1	rna3864	Diuraphis noxia	polypeptide	JOTR01000070 659317..659652 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
id33709	id33709	Diuraphis noxia	exon	JOTR01000070 653536..653671 +
id33710	id33710	Diuraphis noxia	exon	JOTR01000070 659295..659669 +
id33711	id33711	Diuraphis noxia	exon	JOTR01000070 661219..661776 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
XP_015363324.1	cds3764	Diuraphis noxia	CDS	JOTR01000070 659317..659652 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at JOTR01000070:653536..661776+
coding sequence from alignment at JOTR01000070:653536..661776+

spliced messenger RNA

>rna3864 ID=rna3864|Name=XM_015507838.1|organism=Diuraphis noxia|type=mRNA|length=1069bp|location=Sequence derived from alignment at JOTR01000070:653536..661776+ (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.  
attattattataattatagccaAGTCGACTTGTCACTCACCGCTGCCGAA
CGAAAACACGACTCCGCCGCCATCAGCGTGCCATATTAAAGACCGTTATT
GTAACTAGCACACGATAATACACGCCATCGTTGCAGTACTGTCGTTGGAC
TGATAGCCATGCCTGGTATTGTATCGAAGTCCCATAAAGCGGACGAGGAA
AAAAACATCGACACTCGTATGATTCACAGAGTAAGGATTTCCTTGGCACG
AGAACCATCTAACCTCTCTAATGAGGTCAATGAGGAGGCCATGCACAATC
CCGAAATGTTTAGATTAATTACATTCCTTGAAGGTATGCCGGTAGAAGAG
CGAATTCTTGAGTTTTCTGCAGCAACTCCTGAAGAAGATCATGAATACCA
AGCAGAAAAAAGAATTCGTGAAACCGAAGAAGCTCGTAGAGCCCGCGAAA
CAGAAGAAGATCGCAAGAATTACTTGAATCGATTCTTTCGTTAagatatt
ataccataaaaATTCCAGCAACGTACCTCCATACCTACTAACCCAGGAGT
TTCTACTTCATGAATAATAAcaaactgattttatttttgattatttaatt
agacacctaaatattatagtacacatacattatacctatactattatcag
ataataattattgataatattgtattatattcatttttttttatccacta
cctataacttataacttataactattattaaatacgattatatattatat
aggatataTAGACGAGAAATTTTCATTGTTAAATGTGTACTTATGTACTG
TGCAAGTATTCCGGGAAGTAGGgacaatattatactcaagtgttatatat
aatatcaattcatACTACCATACCACACAACAATttcttacatatttaat
aaacgtTAAAAACGGTCATGAATATTGAGTGTTAATCTTATCAAACCTTA
CCAAAgcttgttatttatttgaaatcaattattGTATAGMAACGTATTTT
GTATCGACTTTTGATGATGTTTAcacaaaattgattatttttattataaa
caaaatagcaAAGTTAGAA

protein sequence of XM_015507838.1

>rna3864 ID=rna3864|Name=XM_015507838.1|organism=Diuraphis noxia|type=polypeptide|length=112bp
MPGIVSKSHKADEEKNIDTRMIHRVRISLAREPSNLSNEVNEEAMHNPEM
FRLITFLEGMPVEERILEFSAATPEEDHEYQAEKRIRETEEARRARETEE
DRKNYLNRFFR.

mRNA from alignment at JOTR01000070:653536..661776+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3864 ID=rna3864|Name=XM_015507838.1|organism=Diuraphis noxia|type=mRNA|length=8241bp|location=Sequence derived from alignment at JOTR01000070:653536..661776+ (Diuraphis noxia)
attattattataattatagccaAGTCGACTTGTCACTCACCGCTGCCGAA
CGAAAACACGACTCCGCCGCCATCAGCGTGCCATATTAAAGACCGTTATT
GTAACTAGCACACGATAATACACGCCATCGTTGCAGGTAAATGATTWGTC
GTTACGGCGCCTGACACTGttgtttctaaatattattatattattatgct
tggaTACTTGTACacggtaaaataattttgtgtaggTAAACggttaccta
tacaatattttgcGGGGTCGTATTCCTTATATCGTAGGCGCACATCGAGG
GGAGGGTGGAGCAAAGTAGGCATTTTCTGATTTTCAAGAGCATTTTAAGA
GGTGTCAAATTTTAAGAGACTCACTCACGCATTGATCAGTGTGAGGAATT
ATGTCGTGCTTAAAATCATCttactaaataaattgtttttatcaattttt
gcttgattaaaatatttttttctcgattgtagtgaataaatacaaaagtt
tttagcttaaaagtataaaaaaaaaaatMattttattatagatatataat
tgagatattattattaatatcaactgMTTAATATTGTTGTGATTTTATAA
CAGTAAATATTAATCTTCGATCATCATTctttaatttgatttacatacta
tatattatattacaattgattatatttcagagttaaaatgtatgttttac
ttaacaatttttaggtaaataaataataatgtattagggTTCTRTAACTa
gaagatattaattattatgagttataatatttaaaaggtatataatacct
acataaaaacaatttacaaactataatagATCCTATTTCCTAGCATAGTG
AGAACAAATTTTTTAGTGSTAAACTATTGTAAAAACTCTTAAACTGTAAC
CTTTTACTCTATGGGGTTGACAAATAGTTTTGCTACCATTCATTCGCTGA
TCCTTAATGCGCAGCTATGTCCCGTATACGATATATACCCACGTTCACAA
GATAGAAAATAATCGAAGGAGTACCCTCCAACCCTCCACCATCCACCCAC
AACAACCATCCTACACTTAAGTGTGcgcctatatagtatatttattacaa
tattagaaGTATTATTTGCTTCGGTTGGATTGGTATCATTTAGTATCTAC
GACAATACTAGATTTCATAGATGGTTCATTAGTATAGAAATAGTGCGCTT
CACATGATTACTTACGACTAAATACACTATAAAGTCTACAGACGTAGCTA
GTACAATATTACTTATCTACTAAATAttaagcaataaataatatattttt
gtatttataaattaataagcagCGTGCGGTAAGATGTCGATAACCCGTCA
CTAAatcgttaaaacttaaaatgtgttttatttataatattaaattcata
cctaggcatttgaaaaaaatactggAAATTTGATTCCAATAATAtcctaa
ttactaataaaagtGTTAAAGTTTGCTTTTTTTTGACAGGATTTATTTCA
GTGTCTGTATGCGCGTTGATGTAAAGTATTGGGACATTGGTGTATCTGAG
ATTTTGTTACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNTCTgcccaaaaaaataatttccatacTTAACTCCTTTTAAATGTGGc
actgtataaatgtattatagttacaaTATCTTGTAGTATTAAACCTAAAT
GTTATATCCCAAATATTTGtaagtttgaaatttttaataatactatcgAA
ATTCAACATCTTACCGTATTTGCAGTTTTTGTAAATTAGTTTTACATTAA
ATGCTCAAATACTGTACAATAAAtgcacgtacctataatatttattcgtt
tCCTAGTAgtttgataaaacaaaattattttttattttacgcaattataa
aaattaaaaacggatgataactaataaaatgaattaatatttttatgtaa
tattctgtgtgtatattatgtaagtatctCATAGGAACAAGTTAAAARta
ataaaactataatactactttatatgtgaaataatagtcaatatttaaat
ttctattatttgtGTAAATCAATAagcctattttaaattttttctcagaa
gttcaattaaattataacaggaataataaaatattttRGCTGTTATTTcc
atattaattacataaaagtACAAAACRACGATCATCCTAcgtttaaattt
cttaaatcataaatccataatattttaattacaaataaaaattagaatgg
aaatatattgtgaatacatttctaaaaaattattagatttttaacaaaga
aatttaaacaaataattcaaattgacaataataattaattacaataaaat
attaaatggtacCTACCTAGGTGCCCtcaataaaaatacagttttaataa
ttacttactaattataatttgtcttttataataagtattatatttttcta
ttttacttctaacgtaataatataaactaatcaCTTATAAAAAGTCCTTA
ATTCGGCACAACTGAGTAATTAGCTCATTAATGTATGACTAAATACTTAG
GTATAGCTTAtagcattgagtatagatagtatactAGTGTATATACTCAA
TGCTTATAGATATCATAGTTctgcacaatattatacatagtgcTGTAGGT
TTTCAAATGATAATGAATTTTGAGTGTATTTGTCActttaatctttttat
tttataaaatatctttaggtatatcttataaatgtaaattatttttacta
tgaattcaaattcaaaagaaatacattatgataaaatgtacTTATGATTG
TACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTAGTCTCC
CAAAAATGTGTGTGATTGCTtgcattgtttttaataataataataataat
aataatgtttttaaaataataattatgcgtaATAATCTATAACCTAACAA
TATGTTGAGAtgctttaacaaaaatattcgaCTATTTCGTAGGCAACAGC
AAAAATACAAGAGGAACATACTCGTACCTATGAATCTTTATAGTAACCAC
AAATCGTGAAAATTTGGGTATAGTATTTAGAATAGTTCTTAATGCCCcgt
ctacatatatatatatatttacatcacACAAAAAATCTGTGCAGTCAAAA
TATCACTATCTGATTTTTTCCTGAGTGCAGTTCAACCATTACCTTTTTTC
AATCCAAGTGCAATTCGACTTTCCTGCTAATATTGAAGCAAAACGTCCTA
cgaaaatggaaaaatattatattttatttatatgattatatataggtagt
tctAATTTGGTATAGTATTTGAgtcttgttaatatttttatcatattttt
tctcattagttttaaattgatattaaaatatctacctaATAGRTTGATAT
ATGGGTACCTACCACAAAACATTATGAATAAACGggattttttaagaaat
ttgtttgtaaatgtttaatgtacCATATACTTTGATGTCTAGAACCTTTA
AATcacagtaataatatacctatatacaaaacacataatttaatatgttg
tttaatattagataatatacgaatacctattaattattatggttattaat
gTAATGATTAAAATTKTTAAATagtgatatattgtattatattattgtat
gcacGATAGTACTGTCGTTGGACTGATAGCCATGCCTGGTATTGTATCGA
AGTCCCATAAAGCGGACGAGGAAAAAAACATCGACACTCGTATGATTCAC
AGAGTAAGGATTTCCTTGGCACGAGAACCATCTAACCTCTCTAATGAGGT
CAATGAGGAGGCCATGCACAATCCCGAAATGTTTAGATTAATTACATTCC
TTGAAGGTATGCCGGTAGAAGAGCGAATTCTTGAGTTTTCTGCAGCAACT
CCTGAAGAAGATCATGAATACCAAGCAGAAAAAAGAATTCGTGAAACCGA
AGAAGCTCGTAGAGCCCGCGAAACAGAAGAAGATCGCAAGAATTACTTGA
ATCGATTCTTTCGTTAagatattataccataaaagtAAGTTTGGTCGACa
atgtacaaataattacatttataatgaatacGAATACTACATATACTAGG
TATGTTTggaaatatatacacaatatattttgtatttcaataaatattta
gtttaaaaaaaaatttatatgaaaaatataaatatatattaaaataaacc
tattttctttttcttttaaacaaattttgtaggtttaaaaattgaaattc
aacaatgttttttttagatttcaaatAAACATGTTATCATTCTAACAAAg
catttgatttttattgttagGTTTATTTAGGTTAAACTTTCACACTAAAG
ATCgtttagatataaaatttaatttaaaaaaattgattaaacaattgttt
aaataaatcaaaatatagtttgtacctatggatatttttttttttcaaac
atatgcgaattgatttaatattatcatgattctaaactatacaaattata
tttattctatttaaattttaaaatacaattctcCTTAATACTATGTagga
aatatataggtactatttcaAACCATAtatgtactattatttaaataata
atataacaataaatcaattaaaattattaaaaggatACCATTTCTGCATG
tgttgtatccgtcttacaaacgtagtACAAAATGGACAATCctacaatca
aaataatacattttattcagtaatttcaaaaattatagtgaattggcatc
ttataaaattaaagttaagaataatattattttgattcttGGTCATCTCG
Gaggtttttattgatattcatgatattaattgtattagaaagaagttatt
attaagtaagttataaaatgtacaaacaatctaaaatttaaaatggacAA
TCCTAcgatcaaaataatacattttattcagtaatttcaaaaattatagt
gaattggcatcttataaaattaaagttaagaataatattattttgattct
tGGTCATCTCGGaggtttttattgatattcatgatattaattgtattaga
aAGAAGTTAtggtcattttaaattttagattgtttgtacattttataact
taCTTAATAATAACTTCAAAAAAATCCCCGAGATatcctagataataatc
ttaccttatcataattttttcatcGGTCAATTGttctaattttgtaaatt
aaagattaaaatggattatatataatatgtatcgttaatgtacaatttat
tatactgtatgtttataagacggagacaatacataCCAGTGTGACGTCCT
CTTAATTGTCTAATGTTTTATAAGCATTTCaacttttaattcattaataa
atataatatcattaataattaaaacattttatttaaataaggtgtatcaa
atatcaatttttcCAGGTTCGATATCATTGccacatatttttaaagtttt
gactgaatttttaactaaaaatattgttggttaattagattattcaaaaa
ttattattataaatattaaaatgtaccaaATGGTATCCaatgcaattata
ataaatttatgttcgattttatgtgatttttagATTCCAGCAACGTACCT
CCATACCTACTAACCCAGGAGTTTCTACTTCATGAATAATAAcaaactga
ttttatttttgattatttaattagacacctaaatattatagtacacatac
attatacctatactattatcagataataattattgataatattgtattat
attcatttttttttatccactacctataacttataacttataactattat
taaatacgattatatattatataggatataTAGACGAGAAATTTTCATTG
TTAAATGTGTACTTATGTACTGTGCAAGTATTCCGGGAAGTAGGgacaat
attatactcaagtgttatatataatatcaattcatACTACCATACCACAC
AACAATttcttacatatttaataaacgtTAAAAACGGTCATGAATATTGA
GTGTTAATCTTATCAAACCTTACCAAAgcttgttatttatttgaaatcaa
ttattGTATAGMAACGTATTTTGTATCGACTTTTGATGATGTTTAcacaa
aattgattatttttattataaacaaaatagcaAAGTTAGAA

Coding sequence (CDS) from alignment at JOTR01000070:653536..661776+

>rna3864 ID=rna3864|Name=XM_015507838.1|organism=Diuraphis noxia|type=CDS|length=336bp|location=Sequence derived from alignment at JOTR01000070:653536..661776+ (Diuraphis noxia)
ATGCCTGGTATTGTATCGAAGTCCCATAAAGCGGACGAGGAAAAAAACAT
CGACACTCGTATGATTCACAGAGTAAGGATTTCCTTGGCACGAGAACCAT
CTAACCTCTCTAATGAGGTCAATGAGGAGGCCATGCACAATCCCGAAATG
TTTAGATTAATTACATTCCTTGAAGGTATGCCGGTAGAAGAGCGAATTCT
TGAGTTTTCTGCAGCAACTCCTGAAGAAGATCATGAATACCAAGCAGAAA
AAAGAATTCGTGAAACCGAAGAAGCTCGTAGAGCCCGCGAAACAGAAGAA
GATCGCAAGAATTACTTGAATCGATTCTTTCGTTAa

Metabolic Data

View metabolic data for rna3864 on AphidCyc