rna3902 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	XM_015507891.1
Unique Name	rna3902
Type	mRNA
Organism	Diuraphis noxia (Russian wheat aphid)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
JOTR01000072	contig	JOTR01000072:156184..164790 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)	2016-03-02

Properties


Property Name	Value
Gbkey	mRNA
Gene	LOC107161470
Model evidence	Supporting evidence includes similarity to: 1 Protein
Product	protein LZIC-like
Transcript id	XM_015507891.1

Cross References

External references for this mRNA


Database	Accession
GeneID	107161470
Genbank	XM_015507891.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
LOC107161470	gene2657	Diuraphis noxia	gene	JOTR01000072 156184..164790 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
XM_015507891.1	rna3902	Diuraphis noxia	polypeptide	JOTR01000072 156184..164790 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
id34147	id34147	Diuraphis noxia	exon	JOTR01000072 156184..156210 +
id34148	id34148	Diuraphis noxia	exon	JOTR01000072 164409..164567 +
id34149	id34149	Diuraphis noxia	exon	JOTR01000072 164683..164790 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
XP_015363377.1	cds3800	Diuraphis noxia	CDS	JOTR01000072 156184..156210 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at JOTR01000072:156184..164790+
coding sequence from alignment at JOTR01000072:156184..164790+

spliced messenger RNA

>rna3902 ID=rna3902|Name=XM_015507891.1|organism=Diuraphis noxia|type=mRNA|length=294bp|location=Sequence derived from alignment at JOTR01000072:156184..164790+ (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.  
atgaatactcTGAAATGGTCTGTAATGGCATCTTTTTGTGCATCtataac
aaaaacatttcaaactCCGTCGATCGCCAAAATGTTTGCTAAAAATGAAC
TAAATGCTCTCAGAGAAAAatgcaaacaaattaaaaacgatATMAGATTG
TGTAAATTGAACTTAATGGAAGGAAAGCGACAAAAGCTTGAAGTATTATG
TGCTTTGAAATGTCTTGGTTGTGAGCTGACAAATgaagataaaatgttta
ttagaaGTGAAATAAGAAACATTCATAGCTGTGCACCAATGTGA

protein sequence of XM_015507891.1

>rna3902 ID=rna3902|Name=XM_015507891.1|organism=Diuraphis noxia|type=polypeptide|length=98bp
MNTLKWSVMASFCASITKTFQTPSIAKMFAKNELNALREKCKQIKNDIRL
CKLNLMEGKRQKLEVLCALKCLGCELTNEDKMFIRSEIRNIHSCAPM.

mRNA from alignment at JOTR01000072:156184..164790+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3902 ID=rna3902|Name=XM_015507891.1|organism=Diuraphis noxia|type=mRNA|length=8607bp|location=Sequence derived from alignment at JOTR01000072:156184..164790+ (Diuraphis noxia)
atgaatactcTGAAATGGTCTGTAATGGTAATGCGTTACTCAAGGACTGT
CTGCTACGTGTGCGAGTCTCCGCATACGAGCTGGTCGTCCGTTCAAAAGG
ATTTATTCAGCAGATTCCTTAGACCAGTCGTATGCAGAGGGAGTCCTATA
CTCACCTATTGTCACACACGTATcagtttacaatatatttaattatttta
cagctGAATACATTAATACTACAACATCTatagaataatgttataaacag
cattcagtggttcttaacaaaatttaaaatagtatataagaaACTCATTA
GTCATCACTTCATCAGTACCTTATTTcgattttttagatataaactACCG
tgagagttttaattttttttttctaagaaagttttaatttaattattaca
aatcgttttagttatattgtaaaaacGAATTTCCTAAACTTCACTGACTC
GTGTCCTCGTGTTCATGcagtaattcatattatttatttaatattttaat
gaataattattataatttgtaacaacATACTGCTCagttgttttagattc
tgagcggagYGAGGAATGttgtattgattttagtattttaccatgatgtg
tatttttttttgtgtgtgtctgtcatcacgttttgggaaagtaaaaatac
ttcgattttcgacttcagtaccttgttagcTMAGAAAGTGAATTTTGTTG
GTACTCAGGcgggtaaaaagtaaaaaaattctcaatatttttctaaatat
tcgggataaaaaaactaaaaattaagggaaaatcGGGAAATTTACACATA
ATCAGTTTTCAACAAATCaaatttggtttttgatgtaacttttaaaaaaa
tgaccatagatacatgaaattttcaacgaatgctataagtatattctatg
caccatgcaatttaaaaaaattttggtttaAGCTTatctatttataggca
tatgcaattttcgataattattagtttttttaaaattaatatcgataata
atttattttttatgtgaaaaacttgaaaatttaattcaagacacctaaca
tatttttacaaaagcagttgaaaaataaaagaaatttatagttacaattt
ttttttttttataagcattcaaagtttgaattttgacaacatacgtaaaa
accacgaaaattcacaaattattttatgctaaaaattcatcacaattttt
ctttttaaatctaagatttaaaaatgtttaatataggtttaatatatata
tcctagacagataaacagtctccgctcagaatcgtttttcgtatacaatg
atataatatcattggattcaaatttaattccatccattacagtaacccac
ttgtaacctactgtacagcagagcgacatccacgacttactcgctttttt
atgttaaatataaatggaCAATGGTAGAGATACGGCACCTCGTGTTTTTA
ATGAATTGAATCTGTGAGgattcaaaaaagttttttgaaaGATTTTAATT
GGACAAAGGTAGGTTAGGTTCACAAGTGCACTTCTTCCATAAAATTTACA
TCTCACATCATGCATTTTAATCCTGTTCATAGCAACAACATGACTTTTTC
GTCCATCAATTGATAActgattcaataataaataaatacatacattgaaT
TATgttgtttaacatttaaaaaMATGGAATAAAAAACTTACTCGTATGGA
CCAAAATcatgttttaaatcaaaatgattCTTAGCAATTGTCACATCGAC
TGCATGTGAAACCTATTTTTGTGAGATTTTCGTTGATTTTTCTCCAGGTT
CAGCAATGATCTAACTTTAATAGAaatcaaattgtttaattttaaatcga
aaaaaagAAATGAACTGAACACAATATAGATGTTTATTACTCAGAACATT
AAGGTAAcaactaataatacatttactgcTGATATTTTATCTGCTAACAT
ATTTTtggtagtttaaattattttcatattaggcATTACTGCATTAGGTG
TCTGAACTCCGAAGAATATGATTAGGTACTATCATTGATGAACAAAATAA
ACAGCAACAATGAGGGGMAATAGGTAGGCAACCAATATTACAACTGTGCT
TACGAAGAATGGATCTTtagagaaaaacattttttttgaccgtatataat
attgcctataCATAACCCCTTATTGGCAACTTGCAcagtttattaacatt
tataaaacattaacataataattttcattataatattatattttattaca
tatttgtaaatttaaattaaaatagttaaatacatattatttgttagtaT
AACAATTATCTAATAGTACACACTATTAGGCATATGGGAGATATTAGACA
CATtgaacttcaaaatattttaaggtacaaataacatttacagaaaatta
tacataattaaatatttaataattaatttaacatcatTTATACAATGAGA
ATTTGAGAAGTGGAAACATgagtttaaagaaaatataaatataaattttt
gaaaagatcataaaaaaaaaaaattaatgacagAATATTCATACTATTAA
TCAATTACTGTCTCTAATCTActactcaataattatatatttaattaatt
ataataaaacataatattataaatataatgaaaattaataattatgttat
cgtcttatcattgttattaacgagttataagtattgttagatgtacaaaa
aatttacaattttaaaatactcataacttgcttttaaagttaaaatataa
taaaaagagtaTTGGGTGCGTTAGATTAACATGGTACTTTTAAGTTacat
atgttaaatttatgctaaattttaaactaacggagcaaaacgtgatctgc
tgagcgtaagaTTTGATATGTTATGCACTTCGAAGACGGACATAACACGT
CATGCGAGTGCCGAAtccacttataagttataacactacTACACTAGTGT
ttttaatcaatggtataatatgTCTGCCTGTTTGTTTAAGTGAACATTCT
AAATTcgaatgaaatacaataatattatSAACACTCACGAATTAATCTAA
TATCTCAATTCTGCGCGTTTTATTTGTTCGTTATTACATCTCCTCACCAG
TGGCGTATTCAGAGATTTGATGCCCAGggtaaatataatttggtgccccc
aaaattttaacatttatttacctTTAGTTATTATTAGCAACCGACCATGT
CATCGCATGGTATTCATAGAAAATTActctaataatgtattaatttaagt
atcgTCAGTGTTAAGATTTGCTTGTTCAATAACTAAGATCATcaacaaaa
ttatcataatttaaaatgtgcaAATTAATATCTTTCCTAaagaagtaaat
aaataaataaaatatgatgttattgttatacaattgataaaacagcgtaa
aataattaaaataaaagtaatcatTTACCGATAGCATGATGAATTTGAGT
TACTAGGAGTTGTTAAATCACCCGTTTGAGAAGTGAGAACTAGCTGTAAT
AAGACTATTGACAATATcttctaaatttaattaataaatgaaaacaatta
actaaaaaatgtaacaaataatatgacaaatgtCTTTGTCTGTACAATTG
TATAGAAAATggaaaatactatattttatctaaattttgGATTAACCAAg
tgaaaaattaacaatataaataacatattcaataggtaatagtgcataaa
aaaatgttatataaattagtttgcAAATTTGCAATATGTCATGCAAACTA
TATACTATGTAGCAATAAACATTTTCTATGAATAAAGAAatgtaaaaaag
taatataatatataatctttaataataaatatcatattaataatataagt
aggtaatttaattaagggtgtaaaaaaataaacaatcagCAGTCAGCACT
AAccgtatgttataaaatatgaattatgatattaattgatTACTGAAATT
CAGTACTGAATACTAAAGACGCAAATTTatgaaagtaattaatattaaaa
gtataacataCTTGACGTCTTTTCTGGGCTGTTTAACACGTTATTGCCGT
TATTAGCCTTAAAATAAGAGTTCATGCAAGGAACTTTTGCCATAANNNNN
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ttagGTCATTAGTTTaagaaataaacattaatcaacCAATCAAGtaactg
tataatttttatgtctTATATACAGGCATCTTTTTGTGCATCtataacaa
aaacatttcaaactCCGTCGATCGCCAAAATGTTTGCTAAAAATGAACTA
AATGCTCTCAGAGAAAAatgcaaacaaattaaaaacgatATMAGATTGTG
TAAATTGAACTTAATGGAAGGAAAGCGACAAAAGGTTAGTCTTATTTATC
TAagaataaataaagtatatacttgatatatttgatgtaggtatacaaat
ttagtttattactgttattgtttCATATATGGGTTATCATACATAACAGC
TTGAAGTATTATGTGCTTTGAAATGTCTTGGTTGTGAGCTGACAAATgaa
gataaaatgtttattagaaGTGAAATAAGAAACATTCATAGCTGTGCACC
AATGTGA

Coding sequence (CDS) from alignment at JOTR01000072:156184..164790+

>rna3902 ID=rna3902|Name=XM_015507891.1|organism=Diuraphis noxia|type=CDS|length=294bp|location=Sequence derived from alignment at JOTR01000072:156184..164790+ (Diuraphis noxia)
atgaatactcTGAAATGGTCTGTAATGGCATCTTTTTGTGCATCtataac
aaaaacatttcaaactCCGTCGATCGCCAAAATGTTTGCTAAAAATGAAC
TAAATGCTCTCAGAGAAAAatgcaaacaaattaaaaacgatATMAGATTG
TGTAAATTGAACTTAATGGAAGGAAAGCGACAAAAGCTTGAAGTATTATG
TGCTTTGAAATGTCTTGGTTGTGAGCTGACAAATgaagataaaatgttta
ttagaaGTGAAATAAGAAACATTCATAGCTGTGCACCAATGTGA

Metabolic Data

View metabolic data for rna3902 on AphidCyc