rna3911 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	XM_015507895.1
Unique Name	rna3911
Type	mRNA
Organism	Diuraphis noxia (Russian wheat aphid)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
JOTR01000072	contig	JOTR01000072:380042..386108 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)	2016-03-02

Properties


Property Name	Value
Gbkey	mRNA
Gene	LOC107161474
Model evidence	Supporting evidence includes similarity to: 7 Proteins
Product	zinc finger BED domain-containing protein 5-like
Transcript id	XM_015507895.1

Cross References

External references for this mRNA


Database	Accession
GeneID	107161474
Genbank	XM_015507895.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
LOC107161474	gene2664	Diuraphis noxia	gene	JOTR01000072 380042..386108 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
XM_015507895.1	rna3911	Diuraphis noxia	polypeptide	JOTR01000072 380042..386108 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
id34196	id34196	Diuraphis noxia	exon	JOTR01000072 380042..381079 +
id34197	id34197	Diuraphis noxia	exon	JOTR01000072 386043..386108 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
XP_015363381.1	cds3809	Diuraphis noxia	CDS	JOTR01000072 380042..381079 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at JOTR01000072:380042..386108+
coding sequence from alignment at JOTR01000072:380042..386108+

spliced messenger RNA

>rna3911 ID=rna3911|Name=XM_015507895.1|organism=Diuraphis noxia|type=mRNA|length=1104bp|location=Sequence derived from alignment at JOTR01000072:380042..386108+ (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGGCAAAATAAAAGGCACTGTAACAAGAATCAAGAGTGTTGCACC
TAAATGTAGTAGCAGTCACTGCGTTTTACATCGTCATGCTCTTGTCGCGA
TGAAAATATCATACGAGCTTAAGACAGTTCTCGATCAAGCTGTACAAATT
GTGAATTACGTCAAATCACGTCCACTCCAGTCAAGGCTTTTTAAAAAAGT
GTGCGAAGATATARGAAGTCAGCATCAATCACTTTTTCTTCACACACAAG
TGAGATGGCTCTCAAGAGGAAGAGTTTTATTGAGGCTATTTGAATTGCRC
AACGAGCTTAAGATATTTTTCACCAAACAACCCGGTTCTGCATCTACTGA
CGCGTTTGTTGATTTATTGCATGATGAGGTATGGTTAATAAAATTGGCTT
ACTTGGCCGATATATTCGATAAACTTAACGTAATCTGCAAAGCCCTACAG
GGAAAAACCACGAATATATTTACAGTAAATGACAAAATTTCTTCACTTGA
AAACAAAATTGACTTCTGGATTGAATGTGTTGATCAACATAATTacgaat
gttttattattttaaatgactttCTGAAAGAAAATGAGTTGCAAGTAACT
TCAGatgtggaaaaaaatatacatgagCATTTAATAAGCCTAAAAAAATC
CTTGAAAGAGTATTTTCCGGAGAAGTTACAGGACATGAACTGGTTGCAGA
ATCCATTCGCAGATCATACCAAACCATCAATGCTTACTGTGTCAGAGTAT
GAGAATTTAATTKATATTAAATGTTCATCTTCtcttaaacaaaaatttgg
AGCTGAAAATTttgatctaaataatttttggatTGGAYTTCAAGATGAAT
ATCCTACAATTGTTGAGAAAGCTATTACAATTCTGCTTCCGTTTGTGACG
ACTTACCGATGCGAGACTGGTTTTTCAGCTTACGCTTACACCAAAAACAA
GTACAGAAATAGACTTGATGCAGCTCCAGATCTTCGCATTCAATTATCAG
ATATAAAGCCTAATTTTAgtgatattttaagaaaatatggtaaaaattta
aaaaacagttCTAAAGAAGTAAACGTAGCTCTTGTGATGCAACTCGATAT
GTAA

protein sequence of XM_015507895.1

>rna3911 ID=rna3911|Name=XM_015507895.1|organism=Diuraphis noxia|type=polypeptide|length=368bp
MIGKIKGTVTRIKSVAPKCSSSHCVLHRHALVAMKISYELKTVLDQAVQI
VNYVKSRPLQSRLFKKVCEDIXSQHQSLFLHTQVRWLSRGRVLLRLFELX
NELKIFFTKQPGSASTDAFVDLLHDEVWLIKLAYLADIFDKLNVICKALQ
GKTTNIFTVNDKISSLENKIDFWIECVDQHNYECFIILNDFLKENELQVT
SDVEKNIHEHLISLKKSLKEYFPEKLQDMNWLQNPFADHTKPSMLTVSEY
ENLIXIKCSSSLKQKFGAENFDLNNFWIGXQDEYPTIVEKAITILLPFVT
TYRCETGFSAYAYTKNKYRNRLDAAPDLRIQLSDIKPNFSDILRKYGKNL
KNSSKEVNVALVMQLDM.

mRNA from alignment at JOTR01000072:380042..386108+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3911 ID=rna3911|Name=XM_015507895.1|organism=Diuraphis noxia|type=mRNA|length=6067bp|location=Sequence derived from alignment at JOTR01000072:380042..386108+ (Diuraphis noxia)
ATGATCGGCAAAATAAAAGGCACTGTAACAAGAATCAAGAGTGTTGCACC
TAAATGTAGTAGCAGTCACTGCGTTTTACATCGTCATGCTCTTGTCGCGA
TGAAAATATCATACGAGCTTAAGACAGTTCTCGATCAAGCTGTACAAATT
GTGAATTACGTCAAATCACGTCCACTCCAGTCAAGGCTTTTTAAAAAAGT
GTGCGAAGATATARGAAGTCAGCATCAATCACTTTTTCTTCACACACAAG
TGAGATGGCTCTCAAGAGGAAGAGTTTTATTGAGGCTATTTGAATTGCRC
AACGAGCTTAAGATATTTTTCACCAAACAACCCGGTTCTGCATCTACTGA
CGCGTTTGTTGATTTATTGCATGATGAGGTATGGTTAATAAAATTGGCTT
ACTTGGCCGATATATTCGATAAACTTAACGTAATCTGCAAAGCCCTACAG
GGAAAAACCACGAATATATTTACAGTAAATGACAAAATTTCTTCACTTGA
AAACAAAATTGACTTCTGGATTGAATGTGTTGATCAACATAATTacgaat
gttttattattttaaatgactttCTGAAAGAAAATGAGTTGCAAGTAACT
TCAGatgtggaaaaaaatatacatgagCATTTAATAAGCCTAAAAAAATC
CTTGAAAGAGTATTTTCCGGAGAAGTTACAGGACATGAACTGGTTGCAGA
ATCCATTCGCAGATCATACCAAACCATCAATGCTTACTGTGTCAGAGTAT
GAGAATTTAATTKATATTAAATGTTCATCTTCtcttaaacaaaaatttgg
AGCTGAAAATTttgatctaaataatttttggatTGGAYTTCAAGATGAAT
ATCCTACAATTGTTGAGAAAGCTATTACAATTCTGCTTCCGTTTGTGACG
ACTTACCGATGCGAGACTGGTTTTTCAGCTTACGCTTACACCAAAAACAA
GTACAGAAATAGACTTGATGCAGCTCCAGATCTTCGCATTCAATTATCAG
ATATAAAGCCTAATTTTAgtgatattttaagaaaatatgtgANNNNNNNN
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NNNNNNNttcagtaggtatttatttactatataggtaattaaaaatgtac
tcaACGATTGGTTCAAGTTttcttacatataaatatatttatataatagt
ataaatgtataaaagtaaaatattaggaattgctgaattaattataatta
aatcttacataggtacctagacttaacataatagttaaaatatttgtaat
gaataatgtattactaagttgtatgataattaaaatattatgtggttaGT
TGTCAGTgcgtttatttttaagttatgattCATAAACTACCATTCACCAT
TCATCATTCATCATCCATTGATTTACCATAGACTCGGGataaactatgta
taatacTCTATgctcattattcattatttactcATTATATGCGACAGtcg
tttatcataataatatgttcaKACGAATATCATTCATATGGTACCATTAA
GGCATTaacctaatattttttctattggatattaatttacttttaatacg
gattgcacatttttaaaatttgtcacGTTTTGTCTAATagcttatagttt
taatttactcATAAGACAGTATTAGTCGAGGtagtaatttatactaatag
gtatatttatcgTACctggtatatattaaatagcaaaatatatttacttg
ttGTACTCccttacctatttattaataggtattcgTCAGTAATGTTCATC
ATTAAGCCAATAGTGAGCAGATTTTTTAACAGTAGATAGATWCTTAAGAT
TTTAAAAGAATCGATTAGTCAAAATTTCAAGAATATATTTATGCCAAATT
GTAGCATGCCTTTTAAAGGACGATgtgttataacattttaatatgatgtC
GACATGTGTATTATACGATAAACCTATAACGCTACAGTGCATATCTATTA
tctacattatactatttacgAAACatgtaaataaagtttttgttCAGAGA
AGTGATAACTGATAGAATAGTATTACAGTAGGTACTACACTACTACATGC
GTTTTTATTATGTGCtgtatgatgatgataatataaacataatatatata
gtacgtaTATAATTGAACTTCGACGAATTCATTAATCCGTCGTGAGAATT
TTTTGATACTAGATAGTAAAAATGACATGAAAGTTGCGTGTTTTACTTCG
GTTGATACATTATAATTCTTCATTATATTCAAAGTCCATGGTCATACGAG
TATTATASTACAAGACAATAAGTATCGTTTTCAtagataagtaataattt
aataataMaaatatatattatattgtcaaccGATTTCCCAGAATATTCAA
TATCTTTTCTTTTATcagttatatataagtaatactaGAAGAATCTGGTT
TCCGcgtgtaaatatttatacgtatattataatatgaataattttaatct
caTTTGAATAgtgaagaattttattttttattcatctaataatataattt
tttgtattgagTGAAGCAAACGTATGTTTTTTTTACTCCTAAAGAAAAAT
GCAACGATAATTAATTTTGAGGGTTGTTTCTGGTAGCAAATTGGATCtat
agtggataattttttacacaattaatattgtttttgttccaattcaaaaa
taaataaccataatttgacatttaaaaaataaaaatatttatttaggtat
gcATTTTCAAAACTGTtccaattatttgaatttttatcagacttattata
tatgtatgatacgTTTTTATCTWTGGACctgaaaatataacaaaagaTTC
GTCACAAATCACAAGTTTACTTTCAGTCTTTCAGTGATTAAAATGTATGG
AAAAtgcatattcataattttattttattagcttttgaatttaaaaattt
tgacaaaatccgTCAACATcgtgaattatttttagatgtaatataattat
ataagctgGCAGCTGGTCGCACCCGATTAGAATCTTTTTAATCGTATTtg
tttacaatgatttatcatcaaATTCAAGTCCATTATANNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNattattggaaataaaaaaatta
aattaaagtcacatacattttttatacaggatattatttattttttattt
atctagaaTACATCGACTACTTGGTCATCAGTACTTATAGTACATGTACA
TTtgtgtattgtgttatttacgatttttttgttttaattaagttGTACAA
TTCAGAATTTTTAAGACATGAAATTATATTCCTTATGTATCTTGTGAGTT
CGGTCCTAGTTAGCATTTTGACAACGTTGgatatacaaacatatataata
ataattaataacaataaaagatGAAagattttcgttattttttgcGATTA
AAAAATGAAGGGTGGGCGGAAATAACGTGCTATGTATAGGAACACTCGAA
ATCTACTATATACACCAGAGCTACTTCCTaggttcttattatttttactt
atttagaaGTTAATAAAACATCTTTGAGGAGCTTATAACTTAAGTATCAa
gcttatacttatatagtagtactagtaattaggtacttatacgcATGTGC
GTGCGACAAAttaccgatttttttttatttgttacttatgATGTGGACTT
ATAATGCTGATAAGGCGGTAATGGCACACGCGCGTAAGTACCGCTGTTGT
TTATACACGAACCACGCCGCGGAAGCAGTCCAGGTCACCgattggtatat
taaaataataaaatcggcGTTAGACTTTCTGGAACCGACGAGGTAGCCTT
GACGACGCGACGCACCATAACACACCATTACGTTATGTTCTTATGTAGAG
TAGTTACGTGTTCGTTCTRCCATCGCACCTTAACACGTtttgttaacaat
taaaaatgaataacagcTCGATAAAGTGGTAGGTCGCGTAATTTTCGTGA
TGAGGATGCGAAACGTGCAGGATGATCAAACATCGcagtatttaatactt
aaaccataatatttttaagttacatgTTTAATGATACAAtagttagatat
ttttaaaatcgtttcaatatatggttattttttttctatagctaTAGCAA
ATATGGATGGTCGGATGGATTGGCTTTTTTTGGTCCAGGGTGCAAAATTA
AGTAGGAACCCATTGAAATGGAtccattaataatgttttttttttttaaa
cttattaggAATAAGGATAATCATAGAATAATtctacattacaatattaa
gggtaaaaatttaaaaaacagttCTAAAGAAGTAAACGTAGCTCTTGTGA
TGCAACTCGATATGTAA

Coding sequence (CDS) from alignment at JOTR01000072:380042..386108+

>rna3911 ID=rna3911|Name=XM_015507895.1|organism=Diuraphis noxia|type=CDS|length=1104bp|location=Sequence derived from alignment at JOTR01000072:380042..386108+ (Diuraphis noxia)
ATGATCGGCAAAATAAAAGGCACTGTAACAAGAATCAAGAGTGTTGCACC
TAAATGTAGTAGCAGTCACTGCGTTTTACATCGTCATGCTCTTGTCGCGA
TGAAAATATCATACGAGCTTAAGACAGTTCTCGATCAAGCTGTACAAATT
GTGAATTACGTCAAATCACGTCCACTCCAGTCAAGGCTTTTTAAAAAAGT
GTGCGAAGATATARGAAGTCAGCATCAATCACTTTTTCTTCACACACAAG
TGAGATGGCTCTCAAGAGGAAGAGTTTTATTGAGGCTATTTGAATTGCRC
AACGAGCTTAAGATATTTTTCACCAAACAACCCGGTTCTGCATCTACTGA
CGCGTTTGTTGATTTATTGCATGATGAGGTATGGTTAATAAAATTGGCTT
ACTTGGCCGATATATTCGATAAACTTAACGTAATCTGCAAAGCCCTACAG
GGAAAAACCACGAATATATTTACAGTAAATGACAAAATTTCTTCACTTGA
AAACAAAATTGACTTCTGGATTGAATGTGTTGATCAACATAATTacgaat
gttttattattttaaatgactttCTGAAAGAAAATGAGTTGCAAGTAACT
TCAGatgtggaaaaaaatatacatgagCATTTAATAAGCCTAAAAAAATC
CTTGAAAGAGTATTTTCCGGAGAAGTTACAGGACATGAACTGGTTGCAGA
ATCCATTCGCAGATCATACCAAACCATCAATGCTTACTGTGTCAGAGTAT
GAGAATTTAATTKATATTAAATGTTCATCTTCtcttaaacaaaaatttgg
AGCTGAAAATTttgatctaaataatttttggatTGGAYTTCAAGATGAAT
ATCCTACAATTGTTGAGAAAGCTATTACAATTCTGCTTCCGTTTGTGACG
ACTTACCGATGCGAGACTGGTTTTTCAGCTTACGCTTACACCAAAAACAA
GTACAGAAATAGACTTGATGCAGCTCCAGATCTTCGCATTCAATTATCAG
ATATAAAGCCTAATTTTAgtgatattttaagaaaatatggtaaaaattta
aaaaacagttCTAAAGAAGTAAACGTAGCTCTTGTGATGCAACTCGATAT
GTAA

Metabolic Data

View metabolic data for rna3911 on AphidCyc