rna3913 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	XM_015507911.1
Unique Name	rna3913
Type	mRNA
Organism	Diuraphis noxia (Russian wheat aphid)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
JOTR01000072	contig	JOTR01000072:406300..408069 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)	2016-03-02

Properties


Property Name	Value
Gbkey	mRNA
Gene	LOC107161488
Model evidence	Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Product	xyloside xylosyltransferase 1
Transcript id	XM_015507911.1

Cross References

External references for this mRNA


Database	Accession
GeneID	107161488
Genbank	XM_015507911.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
LOC107161488	gene2666	Diuraphis noxia	gene	JOTR01000072 406300..408069 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
XM_015507911.1	rna3913	Diuraphis noxia	polypeptide	JOTR01000072 406603..407836 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
XP_015363397.1	cds3811	Diuraphis noxia	CDS	JOTR01000072 407474..407836 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
id34206	id34206	Diuraphis noxia	exon	JOTR01000072 406300..406806 -
id34205	id34205	Diuraphis noxia	exon	JOTR01000072 406878..407118 -
id34204	id34204	Diuraphis noxia	exon	JOTR01000072 407179..407405 -
id34203	id34203	Diuraphis noxia	exon	JOTR01000072 407474..408069 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at JOTR01000072:406300..408069-
coding sequence from alignment at JOTR01000072:406300..408069-

spliced messenger RNA

>rna3913 ID=rna3913|Name=XM_015507911.1|organism=Diuraphis noxia|type=mRNA|length=1571bp|location=Sequence derived from alignment at JOTR01000072:406300..408069- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.  
TATAAAATATGTTAAGCTAGTAAATAGGTAGTAAATTCAAAATTAATTAT
AAATCGTTATGTTATACCACTTGTTCTCTTATTAAACTGTAATTGTTGTT
TTGTCTTGCAAATTTTAAACCTACGCTAAGGTTAACAATTTCCGGTTGAC
TTAATTGTAAAGATTCGTCGCTATTCCTATTTTCTAATATTTGTACCACT
GATATTGTAAATTGCAATGCACCTGTGGCATTAATGCGCATCTATGCCAA
GTTCATTGTAGCTATAACAATATTCACGATACTGGTGATTTTGTACTTCA
ACTCAAAGACTGCAATTAATATAAAATCGAAATTATTGTCTTCGAGCCAT
GACGTGGCGACTACATCACTGGATAACAAGTCCGAATCGAAGGTTAGCAT
ATGGATATCGGTGACAAAAATCGATCGTGGCCACCTTTTGACAAAGTTTC
GTAAGTTTTTCAAGTCCCTAATCGGTCATCGTGGCCAGTGTCGTGCTATT
TTTGAATTAAATGTAATAACCGATAACGCCAGCCGTCCGACAGTAGATAG
TGTAATACACGAATTTAGCAAACAATACAAAGAGACACTACTGAAACTAG
TTCATTATGATTTTCAAGACGTTTTGAAAATAGTTGAGAACAAAATTGAA
CCATTGAAACGATTCTTTCAATCATCGAAAGGATCTTACTACAGTGATGA
TGTTTTCTATCTATCACCAGCACTTCATCTAGTCGCTCCTATTTCTCTGG
AAAAAGCTATTGTAGTTGATGTTGATACAGCATTTCAATCTTCCATTTGT
GACCTTTACAATGTGTTTGACAATTTCACCAGCACACAACTGTTTGGTTT
GGCGCCAGAACTATCCCCAGTCTACCATCATATTCTGTGGAAATGGAGAA
ACTATAAAGGTGATAAGTACAAAACACAACGATACCCAAACTTGAATGGC
CTTAACAGTGGTGTTTTATTGTCATATTTGGAGCGGATAAGAAGAAGCGT
TGAATACGATAGACTTATCAGCCCTGAATGGATTTCTAGTGTTGTTCAAA
AATATCTATTTAAAGGACATTTGGGTGATCAAGACTGGTACACTCTGGTA
AGTTATGAACACCCAGAGTTAATATACCGTTTGTCGTGTGGATGGAATCG
CCAGCTATGCACATGGTGGAAGCTACACGGCTATGCAGATACATTTGACT
CATTTGCAAAGTGTACAGAAAAAGTACATTTATATCATGGAAATTGTGAT
ACACCTATTCCACCTTAATAACATTTCTTCTGATCAAAAAAAGTGTATTG
GGTTGCATGAAAAATGAATTGATTTTATGATTCAATAAAATGTAATGGAC
CAATCATGTTCCACTAAACCATGTTTGAAGGACTATTAGCTTACTATTGA
TTCATAAATGTTTACTAATTGTTCATGCAACTTGGCAATACATGATGTTT
GCTATAATGTCATTGAATTACTTGTTTTTGTATAAACTTGAACCGTTATA
TCTACATAAAATGTTGATTTTTTTAATATAATGTTATTGTTTTTAAATAA
TAAAATGTTTATTGTATAGGT

protein sequence of XM_015507911.1

>rna3913 ID=rna3913|Name=XM_015507911.1|organism=Diuraphis noxia|type=polypeptide|length=345bp
MRIYAKFIVAITIFTILVILYFNSKTAINIKSKLLSSSHDVATTSLDNKS
ESKVSIWISVTKIDRGHLLTKFRKFFKSLIGHRGQCRAIFELNVITDNAS
RPTVDSVIHEFSKQYKETLLKLVHYDFQDVLKIVENKIEPLKRFFQSSKG
SYYSDDVFYLSPALHLVAPISLEKAIVVDVDTAFQSSICDLYNVFDNFTS
TQLFGLAPELSPVYHHILWKWRNYKGDKYKTQRYPNLNGLNSGVLLSYLE
RIRRSVEYDRLISPEWISSVVQKYLFKGHLGDQDWYTLVSYEHPELIYRL
SCGWNRQLCTWWKLHGYADTFDSFAKCTEKVHLYHGNCDTPIPP.

mRNA from alignment at JOTR01000072:406300..408069-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3913 ID=rna3913|Name=XM_015507911.1|organism=Diuraphis noxia|type=mRNA|length=1770bp|location=Sequence derived from alignment at JOTR01000072:406300..408069- (Diuraphis noxia)
TATAAAATATGTTAAGCTAGTAAATAGGTAGTAAATTCAAAATTAATTAT
AAATCGTTATGTTATACCACTTGTTCTCTTATTAAACTGTAATTGTTGTT
TTGTCTTGCAAATTTTAAACCTACGCTAAGGTTAACAATTTCCGGTTGAC
TTAATTGTAAAGATTCGTCGCTATTCCTATTTTCTAATATTTGTACCACT
GATATTGTAAATTGCAATGCACCTGTGGCATTAATGCGCATCTATGCCAA
GTTCATTGTAGCTATAACAATATTCACGATACTGGTGATTTTGTACTTCA
ACTCAAAGACTGCAATTAATATAAAATCGAAATTATTGTCTTCGAGCCAT
GACGTGGCGACTACATCACTGGATAACAAGTCCGAATCGAAGGTTAGCAT
ATGGATATCGGTGACAAAAATCGATCGTGGCCACCTTTTGACAAAGTTTC
GTAAGTTTTTCAAGTCCCTAATCGGTCATCGTGGCCAGTGTCGTGCTATT
TTTGAATTAAATGTAATAACCGATAACGCCAGCCGTCCGACAGTAGATAG
TGTAATACACGAATTTAGCAAACAATACAAAGAGACACTACTGAAAGTAA
GTATACATTTTAAGTATGATTTTGATTGGAAATTTTGTTAATGTGTGTGT
ATGATGATTTACAGCTAGTTCATTATGATTTTCAAGACGTTTTGAAAATA
GTTGAGAACAAAATTGAACCATTGAAACGATTCTTTCAATCATCGAAAGG
ATCTTACTACAGTGATGATGTTTTCTATCTATCACCAGCACTTCATCTAG
TCGCTCCTATTTCTCTGGAAAAAGCTATTGTAGTTGATGTTGATACAGCA
TTTCAATCTTCCATTTGTGACCTTTACAATGTGTTTGACAAGTAAACAGA
GTTATAAATGCTTTGAATATACTGAAAAAAATAATATTATTGTTATTATA
GTTTCACCAGCACACAACTGTTTGGTTTGGCGCCAGAACTATCCCCAGTC
TACCATCATATTCTGTGGAAATGGAGAAACTATAAAGGTGATAAGTACAA
AACACAACGATACCCAAACTTGAATGGCCTTAACAGTGGTGTTTTATTGT
CATATTTGGAGCGGATAAGAAGAAGCGTTGAATACGATAGACTTATCAGC
CCTGAATGGATTTCTAGTGTTGTTCAAAAATATCTATTTAAAGTAAGTGA
ACACATTTGTCATTTTTTGTTCAATGTAAATTATTGATTTATGATTGTTG
TTATGATTTTAAGGGACATTTGGGTGATCAAGACTGGTACACTCTGGTAA
GTTATGAACACCCAGAGTTAATATACCGTTTGTCGTGTGGATGGAATCGC
CAGCTATGCACATGGTGGAAGCTACACGGCTATGCAGATACATTTGACTC
ATTTGCAAAGTGTACAGAAAAAGTACATTTATATCATGGAAATTGTGATA
CACCTATTCCACCTTAATAACATTTCTTCTGATCAAAAAAAGTGTATTGG
GTTGCATGAAAAATGAATTGATTTTATGATTCAATAAAATGTAATGGACC
AATCATGTTCCACTAAACCATGTTTGAAGGACTATTAGCTTACTATTGAT
TCATAAATGTTTACTAATTGTTCATGCAACTTGGCAATACATGATGTTTG
CTATAATGTCATTGAATTACTTGTTTTTGTATAAACTTGAACCGTTATAT
CTACATAAAATGTTGATTTTTTTAATATAATGTTATTGTTTTTAAATAAT
AAAATGTTTATTGTATAGGT

Coding sequence (CDS) from alignment at JOTR01000072:406300..408069-

>rna3913 ID=rna3913|Name=XM_015507911.1|organism=Diuraphis noxia|type=CDS|length=1035bp|location=Sequence derived from alignment at JOTR01000072:406300..408069- (Diuraphis noxia)
ATGCGCATCTATGCCAAGTTCATTGTAGCTATAACAATATTCACGATACT
GGTGATTTTGTACTTCAACTCAAAGACTGCAATTAATATAAAATCGAAAT
TATTGTCTTCGAGCCATGACGTGGCGACTACATCACTGGATAACAAGTCC
GAATCGAAGGTTAGCATATGGATATCGGTGACAAAAATCGATCGTGGCCA
CCTTTTGACAAAGTTTCGTAAGTTTTTCAAGTCCCTAATCGGTCATCGTG
GCCAGTGTCGTGCTATTTTTGAATTAAATGTAATAACCGATAACGCCAGC
CGTCCGACAGTAGATAGTGTAATACACGAATTTAGCAAACAATACAAAGA
GACACTACTGAAACTAGTTCATTATGATTTTCAAGACGTTTTGAAAATAG
TTGAGAACAAAATTGAACCATTGAAACGATTCTTTCAATCATCGAAAGGA
TCTTACTACAGTGATGATGTTTTCTATCTATCACCAGCACTTCATCTAGT
CGCTCCTATTTCTCTGGAAAAAGCTATTGTAGTTGATGTTGATACAGCAT
TTCAATCTTCCATTTGTGACCTTTACAATGTGTTTGACAATTTCACCAGC
ACACAACTGTTTGGTTTGGCGCCAGAACTATCCCCAGTCTACCATCATAT
TCTGTGGAAATGGAGAAACTATAAAGGTGATAAGTACAAAACACAACGAT
ACCCAAACTTGAATGGCCTTAACAGTGGTGTTTTATTGTCATATTTGGAG
CGGATAAGAAGAAGCGTTGAATACGATAGACTTATCAGCCCTGAATGGAT
TTCTAGTGTTGTTCAAAAATATCTATTTAAAGGACATTTGGGTGATCAAG
ACTGGTACACTCTGGTAAGTTATGAACACCCAGAGTTAATATACCGTTTG
TCGTGTGGATGGAATCGCCAGCTATGCACATGGTGGAAGCTACACGGCTA
TGCAGATACATTTGACTCATTTGCAAAGTGTACAGAAAAAGTACATTTAT
ATCATGGAAATTGTGATACACCTATTCCACCTTAA

Metabolic Data

View metabolic data for rna3913 on AphidCyc