rna3914 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	XM_015507898.1
Unique Name	rna3914
Type	mRNA
Organism	Diuraphis noxia (Russian wheat aphid)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
JOTR01000072	contig	JOTR01000072:409594..412443 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)	2016-03-02

Properties


Property Name	Value
Gbkey	mRNA
Gene	LOC107161478
Model evidence	Supporting evidence includes similarity to: 34 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Product	lysosomal aspartic protease
Transcript id	XM_015507898.1

Cross References

External references for this mRNA


Database	Accession
GeneID	107161478
Genbank	XM_015507898.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
LOC107161478	gene2667	Diuraphis noxia	gene	JOTR01000072 409594..412443 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
XM_015507898.1	rna3914	Diuraphis noxia	polypeptide	JOTR01000072 409742..412216 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
XP_015363384.1	cds3812	Diuraphis noxia	CDS	JOTR01000072 412125..412216 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
id34215	id34215	Diuraphis noxia	exon	JOTR01000072 409594..409903 -
id34214	id34214	Diuraphis noxia	exon	JOTR01000072 410014..410106 -
id34213	id34213	Diuraphis noxia	exon	JOTR01000072 410168..410315 -
id34212	id34212	Diuraphis noxia	exon	JOTR01000072 410544..410666 -
id34211	id34211	Diuraphis noxia	exon	JOTR01000072 410787..410986 -
id34210	id34210	Diuraphis noxia	exon	JOTR01000072 411537..411655 -
id34209	id34209	Diuraphis noxia	exon	JOTR01000072 411729..411852 -
id34208	id34208	Diuraphis noxia	exon	JOTR01000072 411921..412044 -
id34207	id34207	Diuraphis noxia	exon	JOTR01000072 412125..412443 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at JOTR01000072:409594..412443-
coding sequence from alignment at JOTR01000072:409594..412443-

spliced messenger RNA

>rna3914 ID=rna3914|Name=XM_015507898.1|organism=Diuraphis noxia|type=mRNA|length=1560bp|location=Sequence derived from alignment at JOTR01000072:409594..412443- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.  
TGTACACACAACACACTACACTTATAACAACAGACTATCAGTGTTATTAT
TGTACCTATATAGTTTGTTTTTCGTTCACAATTTTTTTTTTTTATTTTCT
TAACTGTTTCGTATGACTTGCATTATTTTCGATTTCGACACACTCTACTA
CTGCGGTTGTCCATAGTCGTCGACACATTTTATAAATCATATTTTATTGC
CACCGCCATTGTGTACTTGTGTGGTGCATGATGAGTGAATTCAAACGTTT
ATGTCTGCTGTTGCCTACTATAATTGCAATTACAGCCACATTAGTCCAAT
GCGATGGCGATTTGCTCAGAGTGAAGCTCCACAAAATTGACAGTGTACGT
AAGCAGCTCAAAGAGGGGACTTTTAATTTCTTAGGCCAGCTTCGACGTCG
CTATGATCTGTTAAATGCCGAACCATTGTACAACTATTTAGATGCTCAAT
ATTATGGACCAATTACCATTGGAACTCCCCCTCAACCCTTCAATGTGGTA
TTTGACACGGGTTCGTCAAATCTGTGGGTGCCATCAAAACAATGTAGTAT
TTTGAACATAGCATGCATGTTACATAATAAATATGATATGTCCAAATCGA
CTACATATCAAAAGAATGGAACAGAGTTTTCGATTCATTATGGTTCAGGA
AGTTTATCTGGCTATTTGTCTACTGATGTAATTTCTATGGATGGAACTCC
AATATCTAATCAAACTTTTGCTGAAGCAATCAAGGAACCAGGATTTGCTT
TTGTTGCTGCCAAATTTGATGGAATTCTTGGTTTAGGATACGACACAATT
TCTGTTGATGGAGTTGTTCCCCCGTTTTACAATATGGTTAATCAGGGTAT
TATAAAAAGTGCCATATTCTCATTTTATTTGAACAGGGATCCATCTGGTA
CTCCAGGTGGTGAAATAATATTTGGTGGATCTGATCCTGAAAAGTATACT
GGACCCTTTACTTATGTTCCAGTTACCAGACATGGTTATTGGCAGTTTGG
TCTAGATGAAGTTATTGTTGGTAATACATCAATTGTGAGCGGAGCCCTTC
AAGCAATTGCTGATACTGGCACTAGCTTGATTGCTGGACCTGTTGATAAT
ATTAAACAAATCAATGAGCTTCTTGGTGGAACTGCCATACCAGGAGGAGA
ATATGTTATTTCATGTGATCAAATTGATAACTTACCTGTGATATCATTTG
TAATTGGTAGAACAACATTTAAGCTTGAGGGAAAAGACTACATTTTGAAG
GTGTCTCAATTTGGAAAAACAATTTGTCTATCTGGTTTTATGGGTATTGA
CATTCCTCCTCCAAATGGCCCATTATGGATATTGGGAGATGTCTTCATCG
GTCGCTATTATACTGAATTTGATCTAGAAAACAACAGAGTAGGTTTTGCA
AATTGTAAATAAGAGGTTTGGGATCAATATGTGCCATAACCAAACTTGGT
TTTGTACACAGAAATGAATGAACTGACACTATGAACGAAACTATGTTTTA
TATAATTTTTTTAATATTGATTTTTTTAATAATTAAAAATATTTATCGAA
CAAATAGAAC

protein sequence of XM_015507898.1

>rna3914 ID=rna3914|Name=XM_015507898.1|organism=Diuraphis noxia|type=polypeptide|length=395bp
MMSEFKRLCLLLPTIIAITATLVQCDGDLLRVKLHKIDSVRKQLKEGTFN
FLGQLRRRYDLLNAEPLYNYLDAQYYGPITIGTPPQPFNVVFDTGSSNLW
VPSKQCSILNIACMLHNKYDMSKSTTYQKNGTEFSIHYGSGSLSGYLSTD
VISMDGTPISNQTFAEAIKEPGFAFVAAKFDGILGLGYDTISVDGVVPPF
YNMVNQGIIKSAIFSFYLNRDPSGTPGGEIIFGGSDPEKYTGPFTYVPVT
RHGYWQFGLDEVIVGNTSIVSGALQAIADTGTSLIAGPVDNIKQINELLG
GTAIPGGEYVISCDQIDNLPVISFVIGRTTFKLEGKDYILKVSQFGKTIC
LSGFMGIDIPPPNGPLWILGDVFIGRYYTEFDLENNRVGFANCK.

mRNA from alignment at JOTR01000072:409594..412443-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3914 ID=rna3914|Name=XM_015507898.1|organism=Diuraphis noxia|type=mRNA|length=2850bp|location=Sequence derived from alignment at JOTR01000072:409594..412443- (Diuraphis noxia)
TGTACACACAACACACTACACTTATAACAACAGACTATCAGTGTTATTAT
TGTACCTATATAGTTTGTTTTTCGTTCACAATTTTTTTTTTTTATTTTCT
TAACTGTTTCGTATGACTTGCATTATTTTCGATTTCGACACACTCTACTA
CTGCGGTTGTCCATAGTCGTCGACACATTTTATAAATCATATTTTATTGC
CACCGCCATTGTGTACTTGTGTGGTGCATGATGAGTGAATTCAAACGTTT
ATGTCTGCTGTTGCCTACTATAATTGCAATTACAGCCACATTAGTCCAAT
GCGATGGCGATTTGCTCAGGTAAGTAGTGTTACTTTGGATGATTCACAAA
TAACGACAAATATTTACTATTTACTCGCATTGTTCTTTTGCTTTTTCAGA
GTGAAGCTCCACAAAATTGACAGTGTACGTAAGCAGCTCAAAGAGGGGAC
TTTTAATTTCTTAGGCCAGCTTCGACGTCGCTATGATCTGTTAAATGCCG
AACCATTGTACAACTATTTAGATGTAAGCATTTCATTATTGTCCCCTTAT
CTATATGTGTTATTTTTCATTTCGATTTACCTTTTTTGCAGGCTCAATAT
TATGGACCAATTACCATTGGAACTCCCCCTCAACCCTTCAATGTGGTATT
TGACACGGGTTCGTCAAATCTGTGGGTGCCATCAAAACAATGTAGTATTT
TGAACATAGCATGCAGTAATTAACTATAAATATTTTAATCATTACTAATA
ATGCTATTTGTTTTTTGCTAAATATATTTTTTTTTTAGTGTTACATAATA
AATATGATATGTCCAAATCGACTACATATCAAAAGAATGGAACAGAGTTT
TCGATTCATTATGGTTCAGGAAGTTTATCTGGCTATTTGTCTACTGATGT
AATTTCTGTTAGTACATGTTTTTTTTTAAATAAAATAACTCTACATAATG
TTCTAGAATTATATATCAATTACAAGTATGGCAAGGATTCTAATTTATAA
TAATTATTTGAATATTATTTTGATTTAATTGCACAATTATTGTAATATAT
TTTACTTATCATTATTTTTAGGATTTAAATACAGTGATAAAACTTAAAAT
ATACTTAATAAAATAAGATAATGTTAGAGTAACATAAATAAATTTCAGTC
ATATTTTTACCAAAATCTAAAAACCAAAAATAAATTATTGTATAAAAGAA
AAAGTACTGATAGAATGATATAAATTGATCGAATTAATCTTGACCGTTTT
CATCATAAAGTAGTATAAGTATTGAGTTTTGGAAATAATTAGTACCTATG
GTTTTTGTGTTAATTGCTATCAATATTCTTCTTAAATTTTTCAACAATTG
TTTTCAATTTGTTTATTATGTACAATTAATTTTTATGTTATTATTATTTT
TTTATTATTTTATATTTTCTTTACTGAATTTAATAATAATAATTAATAAC
CATTTAGATGGATGGAACTCCAATATCTAATCAAACTTTTGCTGAAGCAA
TCAAGGAACCAGGATTTGCTTTTGTTGCTGCCAAATTTGATGGAATTCTT
GGTTTAGGATACGACACAATTTCTGTTGATGGAGTTGTTCCCCCGTTTTA
CAATATGGTTAATCAGGGTATTATAAAAAGTGCCATATTCTCATTTTATT
TGAACAGGTAATGATGTAATGCATTTTTTTTTWAATGATTTATAGAATTT
TCTACATTGMATTGTTAAAAAATCTTGAACATTATTCAAAATATTTAATT
TTTTATTATCTATATATATTAATTTAGGGATCCATCTGGTACTCCAGGTG
GTGAAATAATATTTGGTGGATCTGATCCTGAAAAGTATACTGGACCCTTT
ACTTATGTTCCAGTTACCAGACATGGTTATTGGCAGTTTGGTCTAGATGA
GTATGTTTTCATACATATTTAGTATTTTTTACAAAACTGAATATTTATTA
GTAACAAAAAACTATTTTCATCAAAATTCATTATTTCTTACAGTTTATAT
TCAACATTATTAAATAATATTAATTAAAGTTTTTACAAATAAATTTTAAG
TCAAGTTTATAAATTGCATTTTTCCTTTGATGTATAGTTATTGTTCATTA
ATTTGTTTTATATTTCTATATATTATAGAGTTATTGTTGGTAATACATCA
ATTGTGAGCGGAGCCCTTCAAGCAATTGCTGATACTGGCACTAGCTTGAT
TGCTGGACCTGTTGATAATATTAAACAAATCAATGAGCTTCTTGGTGGAA
CTGCCATACCAGGAGGAGAATATGTTGTAAGGTCAACTGTTTAGTTATTT
TATATGACCTATTATTAATGATGAATGATTGCTTTAGATTTCATGTGATC
AAATTGATAACTTACCTGTGATATCATTTGTAATTGGTAGAACAACATTT
AAGCTTGAGGGAAAAGACTACATTTTGAAGGTATTTTTTTATTTTTCACT
TTTCTTTGATACATTTTTAAATAAACAGCCATTAAATTATTTTATTATCT
AATTATTAAATTTTTTAAATTTTTTTTTTTTTTATTCAAGGTGTCTCAAT
TTGGAAAAACAATTTGTCTATCTGGTTTTATGGGTATTGACATTCCTCCT
CCAAATGGCCCATTATGGATATTGGGAGATGTCTTCATCGGTCGCTATTA
TACTGAATTTGATCTAGAAAACAACAGAGTAGGTTTTGCAAATTGTAAAT
AAGAGGTTTGGGATCAATATGTGCCATAACCAAACTTGGTTTTGTACACA
GAAATGAATGAACTGACACTATGAACGAAACTATGTTTTATATAATTTTT
TTAATATTGATTTTTTTAATAATTAAAAATATTTATCGAACAAATAGAAC

Coding sequence (CDS) from alignment at JOTR01000072:409594..412443-

>rna3914 ID=rna3914|Name=XM_015507898.1|organism=Diuraphis noxia|type=CDS|length=1185bp|location=Sequence derived from alignment at JOTR01000072:409594..412443- (Diuraphis noxia)
ATGATGAGTGAATTCAAACGTTTATGTCTGCTGTTGCCTACTATAATTGC
AATTACAGCCACATTAGTCCAATGCGATGGCGATTTGCTCAGAGTGAAGC
TCCACAAAATTGACAGTGTACGTAAGCAGCTCAAAGAGGGGACTTTTAAT
TTCTTAGGCCAGCTTCGACGTCGCTATGATCTGTTAAATGCCGAACCATT
GTACAACTATTTAGATGCTCAATATTATGGACCAATTACCATTGGAACTC
CCCCTCAACCCTTCAATGTGGTATTTGACACGGGTTCGTCAAATCTGTGG
GTGCCATCAAAACAATGTAGTATTTTGAACATAGCATGCATGTTACATAA
TAAATATGATATGTCCAAATCGACTACATATCAAAAGAATGGAACAGAGT
TTTCGATTCATTATGGTTCAGGAAGTTTATCTGGCTATTTGTCTACTGAT
GTAATTTCTATGGATGGAACTCCAATATCTAATCAAACTTTTGCTGAAGC
AATCAAGGAACCAGGATTTGCTTTTGTTGCTGCCAAATTTGATGGAATTC
TTGGTTTAGGATACGACACAATTTCTGTTGATGGAGTTGTTCCCCCGTTT
TACAATATGGTTAATCAGGGTATTATAAAAAGTGCCATATTCTCATTTTA
TTTGAACAGGGATCCATCTGGTACTCCAGGTGGTGAAATAATATTTGGTG
GATCTGATCCTGAAAAGTATACTGGACCCTTTACTTATGTTCCAGTTACC
AGACATGGTTATTGGCAGTTTGGTCTAGATGAAGTTATTGTTGGTAATAC
ATCAATTGTGAGCGGAGCCCTTCAAGCAATTGCTGATACTGGCACTAGCT
TGATTGCTGGACCTGTTGATAATATTAAACAAATCAATGAGCTTCTTGGT
GGAACTGCCATACCAGGAGGAGAATATGTTATTTCATGTGATCAAATTGA
TAACTTACCTGTGATATCATTTGTAATTGGTAGAACAACATTTAAGCTTG
AGGGAAAAGACTACATTTTGAAGGTGTCTCAATTTGGAAAAACAATTTGT
CTATCTGGTTTTATGGGTATTGACATTCCTCCTCCAAATGGCCCATTATG
GATATTGGGAGATGTCTTCATCGGTCGCTATTATACTGAATTTGATCTAG
AAAACAACAGAGTAGGTTTTGCAAATTGTAAATAA

Metabolic Data

View metabolic data for rna3914 on AphidCyc