rna3918 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	XM_015507899.1
Unique Name	rna3918
Type	mRNA
Organism	Diuraphis noxia (Russian wheat aphid)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
JOTR01000072	contig	JOTR01000072:459521..462246 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)	2016-03-02

Properties


Property Name	Value
Gbkey	mRNA
Gene	LOC107161479
Model evidence	Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Product	gastrula zinc finger protein XlCGF57.1-like
Transcript id	XM_015507899.1

Cross References

External references for this mRNA


Database	Accession
GeneID	107161479
Genbank	XM_015507899.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
LOC107161479	gene2671	Diuraphis noxia	gene	JOTR01000072 459521..462246 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
XM_015507899.1	rna3918	Diuraphis noxia	polypeptide	JOTR01000072 459818..461851 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
XP_015363385.1	cds3816	Diuraphis noxia	CDS	JOTR01000072 461841..461851 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
id34239	id34239	Diuraphis noxia	exon	JOTR01000072 459521..460388 -
id34238	id34238	Diuraphis noxia	exon	JOTR01000072 460461..460747 -
id34237	id34237	Diuraphis noxia	exon	JOTR01000072 460817..460948 -
id34236	id34236	Diuraphis noxia	exon	JOTR01000072 461030..461263 -
id34235	id34235	Diuraphis noxia	exon	JOTR01000072 461323..461755 -
id34234	id34234	Diuraphis noxia	exon	JOTR01000072 461841..462246 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at JOTR01000072:459521..462246-
coding sequence from alignment at JOTR01000072:459521..462246-

spliced messenger RNA

>rna3918 ID=rna3918|Name=XM_015507899.1|organism=Diuraphis noxia|type=mRNA|length=2360bp|location=Sequence derived from alignment at JOTR01000072:459521..462246- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.  
CGTCGATTTTTTTTGTCTCCCCGCGCGCGCATGTAATCATCGTCGCGACG
ACCCGCCGCCGACTCACCTACACAGTACACAATTAAAATGGCGGAACGTT
ATCAACACAACAGAAGATGTCATTGACGCTTTCCGTTGTTTACGATGTCT
AATCCGATCCACTAGGTAGATAGTTTTTCTGTCCGTTCGGGATTGTTGCT
GCACCCAACCGTTGCGCGTTCAACAAAGCCTAGGGACGACGATGCGCGCG
CGCGCGTCCCAAGTATTTTGGACTTCTTGCCATCGGACGGCCACAACCAC
TGCTCGGCCAGCGGCTGCTTCGATTGTCATCTGTGCGTGACCGTGCGTGA
TTTAGCCGTTTCCCGAAGTCGCTCAGGTATTCGTGTTGCAAGTTAATGTT
AAAAAGGTACAATGACAGTCTCCAGCCAATAAGATTGGTGACGGACCATC
TGACCGAAMGATTGAACCTCGACAGTGCTTGCGCATTGCCGTTAGCCAAT
TCAGGTTCTGCRTATTACGAACCGAAACCGATCAAACCGACGAAGAAAGG
CCGACCGGYGACTGGACAAAATATTCGGCTTGGGGCCAAAAAAAATAACC
AGAATGACGTGACAACGATGAGCAACAATCTCATGTTTCGAAGTATGTTT
TTTATGAACGAAGAAGCTAGACATTTCTTGGCGCCGCCTATACAATTGTC
TACAACTGACGGGGAGTATTTCACTCGCAAAACTGGAAATCCAAATTTGA
ATACACACCATCAACAGCAACAGCAGCAAGCCGTTGCAGCACTCGTCAAT
CACGATTCTAGTTCTAGTGTTGAAATCAAACCGTTACAACCACCGAAAGC
ACGTCCTCACGGGTGTGAAGAGTGTGGCAAAACGTTTCTAATGAAACATC
ATTTGTCAACTCACATGCGAGGTCATACTGGTGAGCGACCTCATATTTGT
CCTGAATGTGGAAAGACGTTTGCTCTGAAACATTGCTTAAGTACTCATTT
GCTATTGCATAGCTCGGAACGACCATACAAATGTTTAGAATGTAATAAAA
GTTTTACATTAAAACATCATTTGGTAAGCCATGAAAGAGTTCACACTCGA
GATAGACCATTTGAGTGTCCTGAATGTCGCCGTCGATTTCCTCAAAAACG
TCATCTGACTACTCATATAAAATTCCACTCTGGTGAACGTCCATATTCTT
GTTCTGTTTGTGGTGARACATTCTCGCGTGAAGAACATCTAGTCATGCAT
TCAAGATTCCACGGGGGAACACAACCATTTGTGTGCCCAGATTGTGGTGC
TGCATTCTTGCGTAAATTTGAATTGGTCAATCATGAACGGCAGCATGKCC
GTATACCAGAATCTTGCCCTGCTTGTGGTAAAGAGTTCTTGCAAAGACGC
ACATTATTGGTCCACGTWAGAAACTGTGGCCTTAACTCATCAACACCAGT
ACATAGATCTCCTTATACTGCAACTGCGAGCAAAGCATGCCGTGAATGCG
GTGAAACATTTGCTAGTGATGAAGGACTAGCACTTCACATGCGATTACAC
ATTGGTGACCATAGTTTCTTATCTGATATTTGTAGTTTAGCTGCTACATT
GAAACAAAGTGTACAAGGTGTGTCAAATGGTATTGCCAATGTACAAAATC
ATCACCAATCACAACATCAATCCGGTGTTGTAGCCAATAAGAAATCTCAC
TATTGTGGAGATTGTGGCCGTGGCTTTACTCAAAAACATGGCTTACAACA
ACATCACGTAAAATACCCAAATGCCACCTGTAAAGATAAGCCCTTTGCTT
GTCAAAAATGTGGTAAAAGTTTCATGCAAAAAAATCATCTTGTATTACAT
GAAAGACAACATATGGATCCACCACCATCCAGAAATCGTAATGCTACCAC
TTCAGCTGTCCAATCCATACAACATTTACAGACTGAACAAGTTGGGTTAC
AACCGACTCCTCTTCACACAACTATCCTGGGACTTCAGCCWATTAGGCAT
ATCCAATCTGGTAGTCAACCTCAACTTTTAAGACATCCCAGTGAGGCCCA
TTCAGGGTCATAATAACTGCCTTGTTTTATACTTAGATTTTTTTTTAAAG
AAAGGTCTATATTTTCTTATCKAAATTGCAGTTATTCATTGATTTTTCTT
GAATTCGAATCCCAAAATATAATAGCAGTGATAGGGGTTTATTCATCAGA
GTATACGTTAAAATATATTTTGAATACCTATATGTATTATTTTATGCATG
AATGCAAATCAATTTAAACATTTATTTTTGAACTGAAAAAATACAGCATC
ATCAGAATTTTAGCGTTTGTTTTTTCATTAGGTTTTTTTTTTTTTTACTT
GCTCTTCAAG

protein sequence of XM_015507899.1

>rna3918 ID=rna3918|Name=XM_015507899.1|organism=Diuraphis noxia|type=polypeptide|length=556bp
MLKRYNDSLQPIRLVTDHLTERLNLDSACALPLANSGSAYYEPKPIKPTK
KGRPXTGQNIRLGAKKNNQNDVTTMSNNLMFRSMFFMNEEARHFLAPPIQ
LSTTDGEYFTRKTGNPNLNTHHQQQQQQAVAALVNHDSSSSVEIKPLQPP
KARPHGCEECGKTFLMKHHLSTHMRGHTGERPHICPECGKTFALKHCLST
HLLLHSSERPYKCLECNKSFTLKHHLVSHERVHTRDRPFECPECRRRFPQ
KRHLTTHIKFHSGERPYSCSVCGETFSREEHLVMHSRFHGGTQPFVCPDC
GAAFLRKFELVNHERQHXRIPESCPACGKEFLQRRTLLVHVRNCGLNSST
PVHRSPYTATASKACRECGETFASDEGLALHMRLHIGDHSFLSDICSLAA
TLKQSVQGVSNGIANVQNHHQSQHQSGVVANKKSHYCGDCGRGFTQKHGL
QQHHVKYPNATCKDKPFACQKCGKSFMQKNHLVLHERQHMDPPPSRNRNA
TTSAVQSIQHLQTEQVGLQPTPLHTTILGLQPIRHIQSGSQPQLLRHPSE
AHSGS.

mRNA from alignment at JOTR01000072:459521..462246-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3918 ID=rna3918|Name=XM_015507899.1|organism=Diuraphis noxia|type=mRNA|length=2726bp|location=Sequence derived from alignment at JOTR01000072:459521..462246- (Diuraphis noxia)
CGTCGATTTTTTTTGTCTCCCCGCGCGCGCATGTAATCATCGTCGCGACG
ACCCGCCGCCGACTCACCTACACAGTACACAATTAAAATGGCGGAACGTT
ATCAACACAACAGAAGATGTCATTGACGCTTTCCGTTGTTTACGATGTCT
AATCCGATCCACTAGGTAGATAGTTTTTCTGTCCGTTCGGGATTGTTGCT
GCACCCAACCGTTGCGCGTTCAACAAAGCCTAGGGACGACGATGCGCGCG
CGCGCGTCCCAAGTATTTTGGACTTCTTGCCATCGGACGGCCACAACCAC
TGCTCGGCCAGCGGCTGCTTCGATTGTCATCTGTGCGTGACCGTGCGTGA
TTTAGCCGTTTCCCGAAGTCGCTCAGGTATTCGTGTTGCAAGTTAATGTT
AAAAAGGTAAGTGGACCAGCGCGCGCAGAACGACRTCCGTGGGTGTCCGT
CGTACACAGATGTAGTATACTTATATCGTTGTTGTTCCCAGGTACAATGA
CAGTCTCCAGCCAATAAGATTGGTGACGGACCATCTGACCGAAMGATTGA
ACCTCGACAGTGCTTGCGCATTGCCGTTAGCCAATTCAGGTTCTGCRTAT
TACGAACCGAAACCGATCAAACCGACGAAGAAAGGCCGACCGGYGACTGG
ACAAAATATTCGGCTTGGGGCCAAAAAAAATAACCAGAATGACGTGACAA
CGATGAGCAACAATCTCATGTTTCGAAGTATGTTTTTTATGAACGAAGAA
GCTAGACATTTCTTGGCGCCGCCTATACAATTGTCTACAACTGACGGGGA
GTATTTCACTCGCAAAACTGGAAATCCAAATTTGAATACACACCATCAAC
AGCAACAGCAGCAAGCCGTTGCAGCACTCGTCAATCACGATTCTAGTTCT
AGTGTTGAAATCAAACCGTTACAAGTGAGATTCTATTTTTAAGCACTGCT
AATCAATTATCTAATTTTATTGTAATTATTTAGCCACCGAAAGCACGTCC
TCACGGGTGTGAAGAGTGTGGCAAAACGTTTCTAATGAAACATCATTTGT
CAACTCACATGCGAGGTCATACTGGTGAGCGACCTCATATTTGTCCTGAA
TGTGGAAAGACGTTTGCTCTGAAACATTGCTTAAGTACTCATTTGCTATT
GCATAGCTCGGAACGACCATACAAATGTTTAGAATGTAATAAAAGTTTTA
CATTAAAACATCATTTGGTTAGTATTAATGCTACATTATTATAATATAAT
TATTTCACCACATCTTGTTTATAATGTATAATAATGATTAATTTTTAGGT
AAGCCATGAAAGAGTTCACACTCGAGATAGACCATTTGAGTGTCCTGAAT
GTCGCCGTCGATTTCCTCAAAAACGTCATCTGACTACTCATATAAAATTC
CACTCTGGTGAACGTCCATATTCTTGTTCTGTAAGTATTCATTTGCTCTT
TTTGGATCTTTCAGAATGATGCTTTAAATATCTGATCAAATGCTTATAGG
TTTGTGGTGARACATTCTCGCGTGAAGAACATCTAGTCATGCATTCAAGA
TTCCACGGGGGAACACAACCATTTGTGTGCCCAGATTGTGGTGCTGCATT
CTTGCGTAAATTTGAATTGGTCAATCATGAACGGCAGCATGKCCGTATAC
CAGAATCTTGCCCTGCTTGTGGTAAAGAGTTCTTGCAAAGACGCACATTA
TTGGTCCACGTWAGAAACTGTGGCCTTAACTCATCAACACCAGTACATAG
ATCTCCTTATACTGCAACTGCGAGCAAAGCATGCCGGTATATATTGATTG
ATTTTATGATTTTGATAAATTAAATATTGCTGATATTAATGTTCATTAAT
ATTTACAGTGAATGCGGTGAAACATTTGCTAGTGATGAAGGACTAGCACT
TCACATGCGATTACACATTGGTGACCATAGTTTCTTATCTGATATTTGTA
GTTTAGCTGCTACATTGAAACAAAGTGTACAAGGTGTGTCAAATGGTATT
GCCAATGTACAAAATCATCACCAATCACAACATCAATCCGGTGTTGTAGC
CAATAAGAAATCTCACTATTGTGGAGATTGTGGCCGTGGCTTTACTCAAA
AACATGGCTTACAACAACATCACGTAAAATACCCAAATGCCACCTGTAAA
GATAAGCCCTTTGCTTGTCAAAAATGTGGTAAAAGTTTCATGCAAAAAAA
TCATCTTGTATTACATGAAAGACAACATATGGATCCACCACCATCCAGAA
ATCGTAATGCTACCACTTCAGCTGTCCAATCCATACAACATTTACAGACT
GAACAAGTTGGGTTACAACCGACTCCTCTTCACACAACTATCCTGGGACT
TCAGCCWATTAGGCATATCCAATCTGGTAGTCAACCTCAACTTTTAAGAC
ATCCCAGTGAGGCCCATTCAGGGTCATAATAACTGCCTTGTTTTATACTT
AGATTTTTTTTTAAAGAAAGGTCTATATTTTCTTATCKAAATTGCAGTTA
TTCATTGATTTTTCTTGAATTCGAATCCCAAAATATAATAGCAGTGATAG
GGGTTTATTCATCAGAGTATACGTTAAAATATATTTTGAATACCTATATG
TATTATTTTATGCATGAATGCAAATCAATTTAAACATTTATTTTTGAACT
GAAAAAATACAGCATCATCAGAATTTTAGCGTTTGTTTTTTCATTAGGTT
TTTTTTTTTTTTACTTGCTCTTCAAG

Coding sequence (CDS) from alignment at JOTR01000072:459521..462246-

>rna3918 ID=rna3918|Name=XM_015507899.1|organism=Diuraphis noxia|type=CDS|length=1668bp|location=Sequence derived from alignment at JOTR01000072:459521..462246- (Diuraphis noxia)
ATGTTAAAAAGGTACAATGACAGTCTCCAGCCAATAAGATTGGTGACGGA
CCATCTGACCGAAMGATTGAACCTCGACAGTGCTTGCGCATTGCCGTTAG
CCAATTCAGGTTCTGCRTATTACGAACCGAAACCGATCAAACCGACGAAG
AAAGGCCGACCGGYGACTGGACAAAATATTCGGCTTGGGGCCAAAAAAAA
TAACCAGAATGACGTGACAACGATGAGCAACAATCTCATGTTTCGAAGTA
TGTTTTTTATGAACGAAGAAGCTAGACATTTCTTGGCGCCGCCTATACAA
TTGTCTACAACTGACGGGGAGTATTTCACTCGCAAAACTGGAAATCCAAA
TTTGAATACACACCATCAACAGCAACAGCAGCAAGCCGTTGCAGCACTCG
TCAATCACGATTCTAGTTCTAGTGTTGAAATCAAACCGTTACAACCACCG
AAAGCACGTCCTCACGGGTGTGAAGAGTGTGGCAAAACGTTTCTAATGAA
ACATCATTTGTCAACTCACATGCGAGGTCATACTGGTGAGCGACCTCATA
TTTGTCCTGAATGTGGAAAGACGTTTGCTCTGAAACATTGCTTAAGTACT
CATTTGCTATTGCATAGCTCGGAACGACCATACAAATGTTTAGAATGTAA
TAAAAGTTTTACATTAAAACATCATTTGGTAAGCCATGAAAGAGTTCACA
CTCGAGATAGACCATTTGAGTGTCCTGAATGTCGCCGTCGATTTCCTCAA
AAACGTCATCTGACTACTCATATAAAATTCCACTCTGGTGAACGTCCATA
TTCTTGTTCTGTTTGTGGTGARACATTCTCGCGTGAAGAACATCTAGTCA
TGCATTCAAGATTCCACGGGGGAACACAACCATTTGTGTGCCCAGATTGT
GGTGCTGCATTCTTGCGTAAATTTGAATTGGTCAATCATGAACGGCAGCA
TGKCCGTATACCAGAATCTTGCCCTGCTTGTGGTAAAGAGTTCTTGCAAA
GACGCACATTATTGGTCCACGTWAGAAACTGTGGCCTTAACTCATCAACA
CCAGTACATAGATCTCCTTATACTGCAACTGCGAGCAAAGCATGCCGTGA
ATGCGGTGAAACATTTGCTAGTGATGAAGGACTAGCACTTCACATGCGAT
TACACATTGGTGACCATAGTTTCTTATCTGATATTTGTAGTTTAGCTGCT
ACATTGAAACAAAGTGTACAAGGTGTGTCAAATGGTATTGCCAATGTACA
AAATCATCACCAATCACAACATCAATCCGGTGTTGTAGCCAATAAGAAAT
CTCACTATTGTGGAGATTGTGGCCGTGGCTTTACTCAAAAACATGGCTTA
CAACAACATCACGTAAAATACCCAAATGCCACCTGTAAAGATAAGCCCTT
TGCTTGTCAAAAATGTGGTAAAAGTTTCATGCAAAAAAATCATCTTGTAT
TACATGAAAGACAACATATGGATCCACCACCATCCAGAAATCGTAATGCT
ACCACTTCAGCTGTCCAATCCATACAACATTTACAGACTGAACAAGTTGG
GTTACAACCGACTCCTCTTCACACAACTATCCTGGGACTTCAGCCWATTA
GGCATATCCAATCTGGTAGTCAACCTCAACTTTTAAGACATCCCAGTGAG
GCCCATTCAGGGTCATAA

Metabolic Data

View metabolic data for rna3918 on AphidCyc