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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Gbkey | mRNA |
| Gene | LOC107161485 |
| Model evidence | Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
| Product | uncharacterized LOC107161485, transcript variant X3 |
| Transcript id | XM_015507908.1 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GeneID | 107161485 |
| Genbank | XM_015507908.1 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| LOC107161485 | gene2674 | Diuraphis noxia | gene | JOTR01000072 544514..548721 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| XP_015363394.1 | cds3820 | Diuraphis noxia | CDS | JOTR01000072 544716..544759 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna3922 ID=rna3922|Name=XM_015507908.1|organism=Diuraphis noxia|type=mRNA|length=1484bp|location=Sequence derived from alignment at JOTR01000072:544514..548551+ (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
ttttctaaattagtatttttgtttctaaaccgatgtattgatatttgata
tagaacttcacaattttttttttgcgactcCCGCATTGTCGTTTTTCGTT
TTTGTCCTTAGGTTTGATGATTTTAGATTTGTGGagtcttaatttaatat
tccaaaataataagACGTTTGTATTCGGTTTCAACAACGAGgagaaaata
atatgaagttCATAAAAGGAAAGAGACCACAAAATGGCCAATCAGGACGT
ACTAAAGCTTTTCAATCTCTTCTGCAAGGGGGTACTCGTAATCGTTTACG
TGTAGCAGCAGCTAATAAAGCAGCCAAGATGAAACGTTTAAAAGCCGTTC
AAAAACACTCTACAAATGGCaaacttaacaataaaaataggaTGTCTAAG
AATAATGCTAGAGTAGCAATTAATGTGGTTGATGCTCGTGTTAAACTTTT
GCAAAAAGCTTTAGAAAAACCAACAGTGATAGTAGACGCTAGACAAAAGT
TAACAAATCAAAAAGATGCTCGTGAAAAGATCCAGGAACGTCGTTTACAT
TCGACATCATATGATACACTACAAGATATAGGCACATCAAGAGGCCATTC
CAATAACTTAGGTCGAGTAAAAATTGACCGTCGTGGTATTCTTACTGTCA
AGTCTATTTTGGATGAAAGAGCATCTTCACATCATTCTAGTTATAGAGAA
AGACGACCAGACAGACTGCCTTCTGTAAATCAAGGACGTTTTGATACTGT
AGAAAAAAGACGCAGCAGCAATACTTTCAATTCAGAGCTGAATACATTTA
GAAgtGACAGACCTATTGAAGAAATTAGACCGGTGAGACGGGATATGAGA
ATATCAAGACGTCCAATTCCAAATACACAGTCTATGAGACGACCGCCAGA
GCGTCCTACAAGACCAATGAGAATTAATGATAAACCATATAATAGACCTA
TGGCAATGGATTATGAGGATTCAATGGAATGGGAAGATACAAATAGATAT
TCTCCAGCAccaGTAATGAGACGGAATGTAGGAAACACAATGTTCAATCA
TGATGGATATCAAGATGATTTATCAGATAGAAATTCAAGaaatCATAGAG
GATTGAGTGAAACGTTACGTTCAAGATTGGACTCTCATCAAGTAGCCTTA
GCTAAACGTTCACGACCACCTATAggccataaaattattatatccaaCTT
AGAACCATCAGTGACATGTGAAGATATAagagaaCTTTTTGCGGATATAG
GGGATTTATTAGATTCTAAAGTGATTCGACCGGGTGTTGCTGAAGTGATT
TATAATCGCCGTGCTGATGCTATTCAAGCAGTAGATGTATATCACAACCG
ACAGCTGGATGGCAGGCCTATGAAATGTGACATGaacaagtCGTAGAATG
CCTTCACGTGGTGCTGATATGTATAAACCATCAGCGTATGTCGGTTATGA
TTTAGATGCAGTACATTctgcattatttaataaa back to topprotein sequence of XM_015507908.1 >rna3922 ID=rna3922|Name=XM_015507908.1|organism=Diuraphis noxia|type=polypeptide|length=398bp
MKFIKGKRPQNGQSGRTKAFQSLLQGGTRNRLRVAAANKAAKMKRLKAVQ
KHSTNGKLNNKNRMSKNNARVAINVVDARVKLLQKALEKPTVIVDARQKL
TNQKDAREKIQERRLHSTSYDTLQDIGTSRGHSNNLGRVKIDRRGILTVK
SILDERASSHHSSYRERRPDRLPSVNQGRFDTVEKRRSSNTFNSELNTFR
SDRPIEEIRPVRRDMRISRRPIPNTQSMRRPPERPTRPMRINDKPYNRPM
AMDYEDSMEWEDTNRYSPAPVMRRNVGNTMFNHDGYQDDLSDRNSRNHRG
LSETLRSRLDSHQVALAKRSRPPIGHKIIISNLEPSVTCEDIRELFADIG
DLLDSKVIRPGVAEVIYNRRADAIQAVDVYHNRQLDGRPMKCDMNKS. back to topmRNA from alignment at JOTR01000072:544514..548551+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3922 ID=rna3922|Name=XM_015507908.1|organism=Diuraphis noxia|type=mRNA|length=4038bp|location=Sequence derived from alignment at JOTR01000072:544514..548551+ (Diuraphis noxia)
ttttctaaattagtatttttgtttctaaaccgatgtattgatatttgata
tagaacttcacaattttttttttgcgactcCCGCATTGTCGTTTTTCGTT
TTTGTCCTTAGGTTTGATGATTTTAGATTTGTGGagtcttaatttaatat
tccaaaataataagACGTTTGTATTCGGTTTCAACAACGAGgagaaaata
atatgaagttCATAAAAGGAAAGAGACCACAAAATGGCCAATCAGGGtaa
atttaaaccattttgTGTATACTATATCTTGTCTGTAGTAGATTtttcag
aatatattatatgataattgatGCTTAATGGTccaaagaaatttatttaa
aacaaaaatgccTGAAGttctaaattattgatttattttcataattgtgT
TATAGACGTACTAAAGCTTTTCAATCTCTTCTGCAAGGGGGTACTCGTAA
TCGTTTACGTGTAGCAGCAGCTAATAAAGCAGCCAAGATGAAACGTTTAA
AAGCCGTTCAAAAACACTCTACAAATGGCaaacttaacaataaaaatagg
aTGTCTAAGAATAATGCTAGAGTAGCAATTAATGTGGTTGATGCTCGTGT
TAAACTTTTGCAAAAAGCTTTAGAAAAACCAACAGTGATAGTAGACGCTA
GACAAAAGTTAACAAATCAAAAAGATGCTCGTGAAAAGATCCAGGAACGT
CGTTTACATTCGACATCATATGATGTAAGTATCTTGTTTGTTAAttacca
ttatttaaaataagttgtaatataatttaaatattaaaattcttaaagat
tttcagaaaaatagtTTATCAAATATAAGGTGTTATGTATTGAAAACTAT
CAATATCATTATCTTTATACAATACTTAATAGAAATAGAAACTAgatatt
tgtttatacatttaaaaaatctaatcatTTAGTAGCCCCTAGAAGTTATC
ATTTGCTAACACTTgtaatttgtttcaatatttgttatttgttaggtTCA
TCAGTTCGTTTTAAGCTCCTTAACATTTTGTGTTTTTGGATAGTGTAttc
ttgattatatttttttaagactcCTCGAGTAACTGTTATCTTTTTACAGT
TAAAATGTTGTTTGtgaatatcttatattaatgATACACCACACAGATTG
CATACCTGGTATAtttgaatatacaatattacaWtataataatcatatta
tatttacccatCTAACAATATAACTGATCGTTTAGTTGAACTTCaaactt
gaatatttttcagTCTGATTAAccgtaggtatacatttttgtctTGGACC
ATGTATGGGCTTAAGTAGAGGAttgagttaaaatataataaaatattgat
taagtgCTATATgaaatgaaatgttatttttaagttatgtatatgtacct
acctgtgAATGTATGTAAGTGATAATCTGTTCATTTTTAcactatcatta
aaatttatggCTTAAAACAaacctttaaaattaaacttttaaatattttt
ttttgaactaatGACAAACAGTTGATAGATTGACactgtttaatttatac
tatgtagtatgtactaaGAGATAATTAAGTAAGATAAGTTATCTATAGTT
ATGGATACTAAAAATAAGATGTCCATTTTGCATACTCAATGTTGTAACCA
TTGGTACTCAACATGTGCTATTTCAGTGGAATAATTTcactactatacta
tactatactacttACCTGGTATATTTGTGGGTACAAAAATAAGTCTCCAT
GGGGTgctcaaatttattatatattttatgatttgataACYGTAAGGTAC
CAAAAAATTGATGCTTGATGCAAAACTGGtagagtttatattttatgtcc
aAAATTATAGTTCTGCATTTAATctgtgattaaaattttaattgtttatg
tttagACACTACAAGATATAGGCACATCAAGAGGCCATTCCAATAACTTA
GGTCGAGTAAAAATTGACCGTCGTGGTATTCTTACTGTCAAGTCTATTTT
GGATGAAAGAGCATCTTCACATCATTCTAGTTATAGAGAAAGACGACCAG
ACAGACTGCCTTCTGTAAATCAAGGACGTTTTGATACTGTAGAAAAAAGA
CGCAGCAGCAATACTTTCAATTCAGAGCTGAATACATTTAGAAGTaacaa
ttttatagatttatatttctTTGCGTTTTTACTGAGTAATGagtatgtgt
ttaatttttgtaaggtGACAGACCTATTGAAGAAATTAGACCGGTGAGAC
GGGATATGAGAATATCAAGACGTCCAATTCCAAATACACAGTCTATGAGA
CGACCGCCAGAGCGTCCTACAAGACCAATGAGAATTAATGATAAACCATA
TAATAGACCTATGGCAATGGATTATGAGGATTCAATGGAATGGGAAGATA
CAAATAGATATTCTCCAGCAccagtaaataaaaattagcaatattaaatt
aaatattaaaatacagtttaatgtatttttaaatttactgaaGGTAATGA
GACGGAATGTAGGAAACACAATGTTCAATCATGATGGATATCAAGATGAT
TTATCAGATAGAAATTCAAGGTAAATTAAATTRttttataatttatatac
tttttattcttctaaaatgtaatcaatttaaaaatagataaaattattct
tagttaaaaattcaaaacaattatggatatatttttataactaatggTAT
ACCctaaaactattttgtattttatctgaCTATTCTACTATTTGAAAAGC
TACTATTAGGTTTCGTGAAACTAATTGAACAGATTttcaatcatttaata
ttatgtttggtagGGTCCATCATTTCTGAAAACTGTAAAAAtactctaaa
tatatttatatttgtatttattggcTATTATAATCTGTAAGAGTATCCAT
TAACTATCCTAGTTTTAAAGTTATGACTAAgtatcaaaatagtttttatg
aaaaGCTGGTGTTTTGTAAATTAAAGTGGTTACTACTTCGTCgctattaa
tttttctttatgtgttaaattaaaattcaagaaaACAGAAAAATTGATTT
CTTTATGATTTGCTACCCTAATCCACTACTCActactttaaacttttatt
gatatattaaccGGTTAACAATAAACRaattcattttttttttacatttc
aattattttaattaaatgttgaagcctcaattagttataacaaatttgaa
atataataaaatctccAATTaggtattttggtttttaaaagaTAACATTA
TCTtttgataattgatttttttttttgcagaaatCATAGAGGATTGAGTG
AAACGTTACGTTCAAGATTGGACTCTCATCAAGTAGCCTTAGCTAAACGT
TCACGACCACCTATAggccataaaattattatatccaaCTTAGAACCATC
AGTGACATGTGAAGATATAagagtatgtatatatttaaaatcacattTCA
TCATGCTGTAATCattgtatttaacaaaatattatatacaaagccaatta
gaatttttttatatatttttaataggcaTGTATTTAATCATATCTTTGCT
ATTTTGATATCAACCTGTGATTTGCCCAAATATCATTTGATTAATCATtt
gtctatttatattttatttaggaaCTTTTTGCGGATATAGGGGATTTATT
AGATTCTAAAGTGATTCGACCGGGTGTTGCTGAAGTGATTTATAATCGCC
GTGCTGATGCTATTCAAGCAGTAGATGTATATCACAACCGACAGCTGGAT
GGCAGGCCTATGAAATGTGACATGGTGAGGAATGCTGGTTCTAACACTGG
GCCAATATCTGTATCtgggtaaataattaatactaagaaaataatttatt
taactgtttCATTGAAGGGTTTATGTCACTATAGGTcattatttgaaaga
aaaagaGAACAttgactttaaattatatttttttttagaacaagtCGTAG
AATGCCTTCACGTGGTGCTGATATGTATAAACCATCAGCGTATGTCGGTT
ATGATTTAGATGCAGTACATTctgcattatttaataaa back to topCoding sequence (CDS) from alignment at JOTR01000072:544514..548551+ >rna3922 ID=rna3922|Name=XM_015507908.1|organism=Diuraphis noxia|type=CDS|length=1194bp|location=Sequence derived from alignment at JOTR01000072:544514..548551+ (Diuraphis noxia)
atgaagttCATAAAAGGAAAGAGACCACAAAATGGCCAATCAGGACGTAC
TAAAGCTTTTCAATCTCTTCTGCAAGGGGGTACTCGTAATCGTTTACGTG
TAGCAGCAGCTAATAAAGCAGCCAAGATGAAACGTTTAAAAGCCGTTCAA
AAACACTCTACAAATGGCaaacttaacaataaaaataggaTGTCTAAGAA
TAATGCTAGAGTAGCAATTAATGTGGTTGATGCTCGTGTTAAACTTTTGC
AAAAAGCTTTAGAAAAACCAACAGTGATAGTAGACGCTAGACAAAAGTTA
ACAAATCAAAAAGATGCTCGTGAAAAGATCCAGGAACGTCGTTTACATTC
GACATCATATGATACACTACAAGATATAGGCACATCAAGAGGCCATTCCA
ATAACTTAGGTCGAGTAAAAATTGACCGTCGTGGTATTCTTACTGTCAAG
TCTATTTTGGATGAAAGAGCATCTTCACATCATTCTAGTTATAGAGAAAG
ACGACCAGACAGACTGCCTTCTGTAAATCAAGGACGTTTTGATACTGTAG
AAAAAAGACGCAGCAGCAATACTTTCAATTCAGAGCTGAATACATTTAGA
AgtGACAGACCTATTGAAGAAATTAGACCGGTGAGACGGGATATGAGAAT
ATCAAGACGTCCAATTCCAAATACACAGTCTATGAGACGACCGCCAGAGC
GTCCTACAAGACCAATGAGAATTAATGATAAACCATATAATAGACCTATG
GCAATGGATTATGAGGATTCAATGGAATGGGAAGATACAAATAGATATTC
TCCAGCAccaGTAATGAGACGGAATGTAGGAAACACAATGTTCAATCATG
ATGGATATCAAGATGATTTATCAGATAGAAATTCAAGaaatCATAGAGGA
TTGAGTGAAACGTTACGTTCAAGATTGGACTCTCATCAAGTAGCCTTAGC
TAAACGTTCACGACCACCTATAggccataaaattattatatccaaCTTAG
AACCATCAGTGACATGTGAAGATATAagagaaCTTTTTGCGGATATAGGG
GATTTATTAGATTCTAAAGTGATTCGACCGGGTGTTGCTGAAGTGATTTA
TAATCGCCGTGCTGATGCTATTCAAGCAGTAGATGTATATCACAACCGAC
AGCTGGATGGCAGGCCTATGAAATGTGACATGaacaagtCGTAG back to top
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