rna4071 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameXM_015508097.1
Unique Namerna4071
TypemRNA
OrganismDiuraphis noxia (Russian wheat aphid)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
JOTR01000076contigJOTR01000076:101306..103940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)2016-03-02
Properties
Property NameValue
GbkeymRNA
GeneLOC107161615
Model evidenceSupporting evidence includes similarity to: 1 EST, 10 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
ProductRNA-binding protein 8A-like
Transcript idXM_015508097.1
Cross References
External references for this mRNA
DatabaseAccession
GeneID107161615
GenbankXM_015508097.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
LOC107161615gene2778Diuraphis noxiageneJOTR01000076 101306..103940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
XM_015508097.1rna4071Diuraphis noxiapolypeptideJOTR01000076 101578..103826 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
id35550id35550Diuraphis noxiaexonJOTR01000076 101306..101629 +
id35551id35551Diuraphis noxiaexonJOTR01000076 103195..103341 +
id35552id35552Diuraphis noxiaexonJOTR01000076 103404..103540 +
id35553id35553Diuraphis noxiaexonJOTR01000076 103600..103724 +
id35554id35554Diuraphis noxiaexonJOTR01000076 103790..103940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
XP_015363583.1cds3961Diuraphis noxiaCDSJOTR01000076 101578..101629 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>rna4071 ID=rna4071|Name=XM_015508097.1|organism=Diuraphis noxia|type=mRNA|length=884bp|location=Sequence derived from alignment at JOTR01000076:101306..103940+ (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.  
TTACTGGCAAGACAATCATTGAACTATTGATGTTTTGAATTAAGATATTG
GATCATGTCGATCACGACGATCATGTCTTGATTATTAATCCACCGAACGT
CCGCATGTAGAAACTTCtgaacatattaacatattatttacccgAACCAG
AATCTCTTCGAGTTTTACAAATTCATCCAAAACGTTAGAATAGGTTAGCG
TTAGTCACCTATCGTTCGCTAAGTACAAAACATTACTTTCGGTATTACTA
GTTCCAGCCGTTCCAGGTTATAATGGCTGACGTTTTAGACTTAAACGCTG
AAGATTTCGTGGAAGAAGATGAcgagGGAGTTTCTAAGCTTAAGGATAAA
GCCAGAAGAAGGAAAGGACGTGGATTTGATGAGAAGTCTAAAAGAGATGA
TATTAAAGATGAAGCTATGGAATTTGATTCTGTCGATCAAAATGATGAGG
AGGGCCCTGGACCACAAAGatcGGTTGAAGGTTGGATTTTGTTCATTTCT
TCTTTACATGAAGAAGCACAAGAAGATGATTTACATGATAAATTTGCTga
gtttggaaaaataaaaaatttacatttaaacttGGACCGTAGAACtggat
ttttaaaaggtTATGCATTAGTTGAATATGAGTCTTATAAGGAAGCATCT
CGTGCACGTGAAGGACTTAATAATACAGACATTTTGGGACAGCAAATTAG
TGTTGATTGGTGCTTTGTGAAAGGACCAAaaagGATTAAAAAATCAAGAC
GCCGAATGACTAATTATTAACCAAGTAATTGAAACTCAagacatgtaaaa
aaaatgtacaacttaattaagttatattttgtattacatttaaaactata
aaaatattttatgacttattaatagaaaaataaa
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protein sequence of XM_015508097.1

>rna4071 ID=rna4071|Name=XM_015508097.1|organism=Diuraphis noxia|type=polypeptide|length=166bp
MADVLDLNAEDFVEEDDEGVSKLKDKARRRKGRGFDEKSKRDDIKDEAME
FDSVDQNDEEGPGPQRSVEGWILFISSLHEEAQEDDLHDKFAEFGKIKNL
HLNLDRRTGFLKGYALVEYESYKEASRAREGLNNTDILGQQISVDWCFVK
GPKRIKKSRRRMTNY.
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mRNA from alignment at JOTR01000076:101306..103940+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4071 ID=rna4071|Name=XM_015508097.1|organism=Diuraphis noxia|type=mRNA|length=2635bp|location=Sequence derived from alignment at JOTR01000076:101306..103940+ (Diuraphis noxia)
TTACTGGCAAGACAATCATTGAACTATTGATGTTTTGAATTAAGATATTG
GATCATGTCGATCACGACGATCATGTCTTGATTATTAATCCACCGAACGT
CCGCATGTAGAAACTTCtgaacatattaacatattatttacccgAACCAG
AATCTCTTCGAGTTTTACAAATTCATCCAAAACGTTAGAATAGGTTAGCG
TTAGTCACCTATCGTTCGCTAAGTACAAAACATTACTTTCGGTATTACTA
GTTCCAGCCGTTCCAGGTTATAATGGCTGACGTTTTAGACTTAAACGCTG
AAGATTTCGTGGAAGAAGATGAcggtaatatatttttgcttatatattat
ttactctaACTTCTaagtaactttaaaaatattatgcaagaTGGATGGAT
ATTGTATGCTCGAGTTATTATTACACCCTATTATACTATTGACATTAATC
CTACTAAAAAGTAGATTGTGAACTatgaattgataaaattatccatataa
attatataatatgaaaaatatttattgtgataaCGAAAAAACTTCTTTAA
AGTTTGTTTAAGTAAATCtacaatgtatatacattttataacaaccTTGA
TATGCAAAAATGTTTTCCTACTTTTGATTAACTTGCATTTTCATGTATTa
ctgttaaataattatgatatcaaatttaattgtcATCAACCTTTAGATAA
ATAAACAACTTaatgttgttttcaattttaaaataataacatttttttaa
tataatgaagtgttttattatgatttgaCACTGTCTTATTAAAATTGACt
agttttaaatagttaagttatttattgagaacaatattttactattagaa
cTTATATACTCTtactatacttaaaaatcaaatttattttgagtttaata
tgtaagaaaactaaataaaaaaagtttattgtaTCATTGTGCACCAGAAA
TTTTTTCATCCTGTGGctcttttagttttttacaatatttttatggctcc
caatttattataaaaaaaattgaaacaacacacgGATACAATATGGCCAA
TATGGGGGATAATAACAATGACttaggtactaaaaattaaactttaaata
gtgGCGTGATATCGTTTccataatgatttaaaataatatttataacaatt
atacaaaatctacattaatattagttttcttCTTCTTTTAAATACCTCtg
ttgtatatgaaaaacgattctgagcgaagaggTCTGTCAGTTTTTACCTA
TTACTACGCACATTTCTgattttacttttgaaataatttcttttattgat
caagattagttattacagtaggttgaattaatttttaccaaaaacttAAG
TTTGAAAATGCCAttctataggtatacaatttaatgatatacttaactta
tacatttaaagtacacccctataatatttttgagttcaaaaaaaaattgt
tatttattttagtatctattatcttcaaaatttgaacttaaaatagatat
ataaaagaaaattggtcatatattttttagactTTTGATTCCAACATAAA
CTAGTTACAagcaacattttattaaattttcaagctataaaaattgaaca
gtttgaacattttaaatttaatggtaaTTTCCAAACATTCTTGATTTTGA
AGATTTTCTATGAAAAaggtatgtttatatttttaagaatttcaaaattg
GTCTGGTAAAAACTGAAGTGGaactttgtattattgttttggtattttaa
cCCTGTAAAGAATTTtgtcatcaatatttatagagaaaaacaaaaacatt
gaaaaattgcaataaaatgaaattgttgCAATTATTGAAGCAAAGTactc
ataaactaaaaaaaaattaattaatatcattaattttagagGGAGTTTCT
AAGCTTAAGGATAAAGCCAGAAGAAGGAAAGGACGTGGATTTGATGAGAA
GTCTAAAAGAGATGATATTAAAGATGAAGCTATGGAATTTGATTCTGTCG
ATCAAAATGATGAGGAGGGCCCTGGACCACAAAGatgtaattatacaata
ttcatacatttttaattataattcatataattatttttttctttacagcG
GTTGAAGGTTGGATTTTGTTCATTTCTTCTTTACATGAAGAAGCACAAGA
AGATGATTTACATGATAAATTTGCTgagtttggaaaaataaaaaatttac
atttaaacttGGACCGTAGAACtggatttttaaaagtaatcattattagg
tatttagtttattgttatattgattatttttttatttttttaagggtTAT
GCATTAGTTGAATATGAGTCTTATAAGGAAGCATCTCGTGCACGTGAAGG
ACTTAATAATACAGACATTTTGGGACAGCAAATTAGTGTTGATTGGTGCT
TTGTGAAAGGACCAAaaaggtattatttaataataaacataacattatat
tatttattttactttatgaaTGTGTTATTTTTAGGATTAAAAAATCAAGA
CGCCGAATGACTAATTATTAACCAAGTAATTGAAACTCAagacatgtaaa
aaaaatgtacaacttaattaagttatattttgtattacatttaaaactat
aaaaatattttatgacttattaatagaaaaataaa
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Coding sequence (CDS) from alignment at JOTR01000076:101306..103940+

>rna4071 ID=rna4071|Name=XM_015508097.1|organism=Diuraphis noxia|type=CDS|length=498bp|location=Sequence derived from alignment at JOTR01000076:101306..103940+ (Diuraphis noxia)
ATGGCTGACGTTTTAGACTTAAACGCTGAAGATTTCGTGGAAGAAGATGA
cgagGGAGTTTCTAAGCTTAAGGATAAAGCCAGAAGAAGGAAAGGACGTG
GATTTGATGAGAAGTCTAAAAGAGATGATATTAAAGATGAAGCTATGGAA
TTTGATTCTGTCGATCAAAATGATGAGGAGGGCCCTGGACCACAAAGatc
GGTTGAAGGTTGGATTTTGTTCATTTCTTCTTTACATGAAGAAGCACAAG
AAGATGATTTACATGATAAATTTGCTgagtttggaaaaataaaaaattta
catttaaacttGGACCGTAGAACtggatttttaaaaggtTATGCATTAGT
TGAATATGAGTCTTATAAGGAAGCATCTCGTGCACGTGAAGGACTTAATA
ATACAGACATTTTGGGACAGCAAATTAGTGTTGATTGGTGCTTTGTGAAA
GGACCAAaaagGATTAAAAAATCAAGACGCCGAATGACTAATTATTAA
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