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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Gbkey | mRNA |
Gene | LOC107161628 |
Model evidence | Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns |
Product | interferon regulatory factor 2-binding protein-like A, transcript variant X2 |
Transcript id | XM_015508111.1 |
Cross References
External references for this mRNA
Database | Accession |
GeneID | 107161628 |
Genbank | XM_015508111.1 |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Species | Type | Position |
LOC107161628 | gene2789 | Diuraphis noxia | gene | JOTR01000076 226918..232983 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
id35660 | id35660 | Diuraphis noxia | exon | JOTR01000076 226919..228208 + |
id35661 | id35661 | Diuraphis noxia | exon | JOTR01000076 231474..231949 + |
id35662 | id35662 | Diuraphis noxia | exon | JOTR01000076 232029..232983 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
XP_015363597.1 | cds3973 | Diuraphis noxia | CDS | JOTR01000076 227392..228208 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >rna4087 ID=rna4087|Name=XM_015508111.1|organism=Diuraphis noxia|type=mRNA|length=2721bp|location=Sequence derived from alignment at JOTR01000076:226919..232983+ (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.
TTGTGCCCGCGCGCGCACGGTCACCTACACCACCACCTCCTctatcatca tcgtcgtcgccCCCCTCACCACACTGTTCTCGTACCTAGACCGGTCACAC CGCCCTCAGCTCTTGCCATCACCGCAGCGACGTCACTCCACTACGACTAC GGCTGTTCATTGCGTTTGCTGTGTGGCGCGGTTACGACGTTACGTTCAGT TTCCGTGTGTACGYGCCCGTGTATACGCGGTTTTGATATCCGTCGTTCGT GTTCTCGCGCGtacggattattattattactattgatttggttttttttc gtatttttttttttttaaatttttaatttggtcaTATGGATTTTAATCTA GTGACGTTTATTGAAAGCAAATACAATAACGGCTCAACGACAACATCAAG TGTGCAGTGCTGStaaataataatatatctgtcGACTACCATTAGACCAC GCGCAAATATCGTCCAAAAAATCATGCAGATGAGTAAGCGACAACACTGT TACCTGTGCGACTTGCCCCGTATGCCATGGGCAATGTTGCACGATTTCAC CGAGCCCGTGTGCCGCGGGTGCGTCAACTACGAAGGAGCCGACCGCATTG AGTTGGTGATCGAAACGGCCAGGCAAATGAAACGGGCCCACGGATTCCAG GAATCAGCCCGGTCCACGGCCGTGGGCGGTGGGTCCACTGCCGTCAACGC GCACCACCCGAAAAACTCGCATCGACACGAAAACGGTACTCTGGAAGTGG TTGGATTGCCACCGCAAGCACACCAGCTGGCCGCACGACAAACACAACAA CCTCCACCGCCTCCGCCACCGGCCGCGGCCACATCGCACTATGCGGCCCT GCACCATCAGCGGTCCACACTCATGGAATATCCCGGTAGGCCGGGTGGCG GTCACGTTGTCGACCACGAGGTGGCCATGAGTCGGACATCGGTGCGCTTG TCGCAGAgccagcagcaacaacaacaacagcaacagcaacagcaacagca acaacaacaacagcaacagcaacacaTGGCGCATCACATTCCGAGCCGAG CCCAAGCCGGTGGCCAGGGCCTGAAACGCGGGCTGAGCACGCAAGCCGAT GACGACGATCACCACTCAGAAGGCAACAAGCGCATGATGGAAGAACAGCA GCAGCGACCGCCGCTACAGAGAGGCGAATCGCTGCCAGCCGTCAGTCTCG CCGTTCCTTTCGTTGAGCGGTCGTTCAAAGCCGAACCTAAACACCCAATC AGGACCACATCATTCGACACGTCCACGTTCAAGACATCCAGCGGTTCGTC CAGCGGACGTAGGTCATCCGGAAGTCGTCACGTCAGCTCCACAACTGTGA CATCTAGTGAGGCCAACGGCGGCAATGCTCCCGGTTCCGGCGTGCCCGGC GTCAATGGTCCCGGCGTTAACGGCCCAGGTGGCGTCGGCGGTCCAGCCGC CAACGGTAATGGTGGAGGGAGCGCTTTGAACGCATCAGTTCCTGTTGGCG GTGGTTCTGATGGCGTCGCATCCGGAACACCTATGGACGGCACCACACCA ACGTTGCCGCAAGTTCCACCCTCTGTGCCGCTGACGAATGCGTCGGCTGC CGCCGCGGCCGCGGCCGCAGCCGCCAACACAGCTACTCTCAAGTGCACGC TGTGCCAAGAGCGGTTGGAAGACACGCACTTTGTCCAGTGCCCGTCCGTT CCYCATCACAAATTTTGTTTYCCGTGCTCGAGGGACAGCATCAAACGACA GGGAGCCGGCTCCGAGGTGTATTGTCCTAGTGGCGAAAAATGCCCACTGG CTAATTCAAACGTGCCCTGGGCTTTCATGCAAGGCGAGATAGCCACCATA CTGGGCGAAGAATTCAAAGTGAAAAAAGAACGAgactcataaattatatt ataattattattttttttatttttattgattacgtcatattatagtatat actgtgTAAACATGTTtcacataatcatattattatgttatatgaaaCTT CACCTCCTACAGATCCTATCAGATTATCAGACTTCTAGGCCTGGAAGGAT CAAGGCCTCGggtgtaaaatatgcatttatttattaagccctctgtatat tacattatgtataaaataattttattacgttaCGTGAAAATGCCAATAGC TATTATAACGGTGTTGTACGTTCCCGTAGGGGCAATcctttatttttact ttttaggcaaaatttagaataattttagcCTTGTTATGTTCTTGTTTCCC CGCCGTTTTCYTTCGAAATCTCGCTGTCGACGAGACATGGAAGGGAGACT AAAGGKAGCAATCTTTGGCGTCAAGACTGAGTCAAGTCGtgtttgtattt tacattttttaagtaaaacaatTGTTAAGAAAAACGGTCCTAAGACTGTG CTAGTCAAagcaaatatatgtatattagtattatatataaatcttaagtg cacaaaatgtatattactgttttttagctttaaattatgtaccctaaagt taatttttaggCCGGTAGCGTTGAAACTAcgtttgaaatttttgttttcg aaCAGAGATCAATTGTAAAGGAACTCACAATCTCGCTTGTTTGCATCTCg tgcgtgtgtatatattttgtaaaaaatattatcgtacTAGATTTTGTGGT TTCTCCCCACCCGTCGCCTCTTccctaatgtattttaataataataaaaa tacaaatcggTAATCATCAga back to topprotein sequence of XM_015508111.1 >rna4087 ID=rna4087|Name=XM_015508111.1|organism=Diuraphis noxia|type=polypeptide|length=473bp
MQMSKRQHCYLCDLPRMPWAMLHDFTEPVCRGCVNYEGADRIELVIETAR QMKRAHGFQESARSTAVGGGSTAVNAHHPKNSHRHENGTLEVVGLPPQAH QLAARQTQQPPPPPPPAAATSHYAALHHQRSTLMEYPGRPGGGHVVDHEV AMSRTSVRLSQSQQQQQQQQQQQQQQQQQQQQQHMAHHIPSRAQAGGQGL KRGLSTQADDDDHHSEGNKRMMEEQQQRPPLQRGESLPAVSLAVPFVERS FKAEPKHPIRTTSFDTSTFKTSSGSSSGRRSSGSRHVSSTTVTSSEANGG NAPGSGVPGVNGPGVNGPGGVGGPAANGNGGGSALNASVPVGGGSDGVAS GTPMDGTTPTLPQVPPSVPLTNASAAAAAAAAAANTATLKCTLCQERLED THFVQCPSVPHHKFCFPCSRDSIKRQGAGSEVYCPSGEKCPLANSNVPWA FMQGEIATILGEEFKVKKERDS. back to topmRNA from alignment at JOTR01000076:226919..232983+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4087 ID=rna4087|Name=XM_015508111.1|organism=Diuraphis noxia|type=mRNA|length=6065bp|location=Sequence derived from alignment at JOTR01000076:226919..232983+ (Diuraphis noxia) TTGTGCCCGCGCGCGCACGGTCACCTACACCACCACCTCCTctatcatca
tcgtcgtcgccCCCCTCACCACACTGTTCTCGTACCTAGACCGGTCACAC
CGCCCTCAGCTCTTGCCATCACCGCAGCGACGTCACTCCACTACGACTAC
GGCTGTTCATTGCGTTTGCTGTGTGGCGCGGTTACGACGTTACGTTCAGT
TTCCGTGTGTACGYGCCCGTGTATACGCGGTTTTGATATCCGTCGTTCGT
GTTCTCGCGCGtacggattattattattactattgatttggttttttttc
gtatttttttttttttaaatttttaatttggtcaTATGGATTTTAATCTA
GTGACGTTTATTGAAAGCAAATACAATAACGGCTCAACGACAACATCAAG
TGTGCAGTGCTGStaaataataatatatctgtcGACTACCATTAGACCAC
GCGCAAATATCGTCCAAAAAATCATGCAGATGAGTAAGCGACAACACTGT
TACCTGTGCGACTTGCCCCGTATGCCATGGGCAATGTTGCACGATTTCAC
CGAGCCCGTGTGCCGCGGGTGCGTCAACTACGAAGGAGCCGACCGCATTG
AGTTGGTGATCGAAACGGCCAGGCAAATGAAACGGGCCCACGGATTCCAG
GAATCAGCCCGGTCCACGGCCGTGGGCGGTGGGTCCACTGCCGTCAACGC
GCACCACCCGAAAAACTCGCATCGACACGAAAACGGTACTCTGGAAGTGG
TTGGATTGCCACCGCAAGCACACCAGCTGGCCGCACGACAAACACAACAA
CCTCCACCGCCTCCGCCACCGGCCGCGGCCACATCGCACTATGCGGCCCT
GCACCATCAGCGGTCCACACTCATGGAATATCCCGGTAGGCCGGGTGGCG
GTCACGTTGTCGACCACGAGGTGGCCATGAGTCGGACATCGGTGCGCTTG
TCGCAGAgccagcagcaacaacaacaacagcaacagcaacagcaacagca
acaacaacaacagcaacagcaacacaTGGCGCATCACATTCCGAGCCGAG
CCCAAGCCGGTGGCCAGGGCCTGAAACGCGGGCTGAGCACGCAAGCCGAT
GACGACGATCACCACTCAGAAGGCAACAAGCGCATGATGGAAGAACAGCA
GCAGCGACCGCCGCTACAGAGAGGCGAATCGCTGCCAGCCGTCAGTCTCG
CCGTTCCTTTCGTTGAGCGGTCGTTCAAAGCCGAACCTAAACACCCAATC
AGGACCACATCATTCGACACGTCCACGTTCAAGACATCCAGTAAGTGTTT
TCAcctcttattaaatattaaaYAATTCTTCCGGCATTAGGTAACGTGGT
GATTGCAATGTCTGACGACGACGTCATTGCTAGTTATTTCACATCCCGAG
ATTAATAATACTGTAGGTACCTTATAGTTTTTCgggatataataaaatta
ttgcctATCCTACCCAAATGTATGTACATCGGGTTTAATGCTACTATCAT
TGAAGGATTATTGTTCATTATCTCGGACGTTCCTCTGTGacgtattaatt
ttgttaagcCGGCGAGCGGTTATATTTAGCGTTAAGTGGTCGCGCGCAAC
GGTTGAGGGCGTGAGCGTATCGAGATCGTCGATAATACATTCCTCGACGG
CCACAAAACAATACGTCGGCTGACGAATGGGCCGTGACGTCATAGGATCC
AGTTCCCCGACCTGGTTCAACCGGCAGGccactattaatatttcataata
tattgagaCGTGCGGTCGATCAGCAAAATTCACCTTTTCTGTGGTCCAAT
GACCTTGGTAGTAGGACCAAAAAGCACTCGAGAAAATATGGAATcccgat
ttatttattttgcgttTCTGGGGGGTGGGCGAGcggtcggtcggtcggtc
gCTGATAGATTTGGCAACGTTACCCGTGTACAACGAGTCTAGTGACGTAA
TGCGTACACATGCACACGTACGTATTACGTTCCATTGCGCTTGCGCTCAT
TTTCTACGAGAATGTTTTATCGGATGATCCGATCGTTCTGTTCCGCTCCC
CCGTCGTTGTGGTGATTGATTGTTGTTTGCGTACCAGGTGGGTTGTTGTA
GTAGTGGTGGGCGGAAACAACGGGTGCATTTTCGTGCGTTTTGACTAGAA
TGCGGATATTTCGCTCCGCGTGCATGCTTGAGGGAATTACCGATCGGGGG
TGTGGAAACCATTGTCGTCGTCAATGACCTATTAAATACGAAATAACACG
TGGTAAAAAAAAGGTATCTAAATTAGGTATATcgtgatattttattcaaa
cggCCACATATAGCTCTGCGTCTTGcgttttttttactttcattcTTTTT
ACTAACTCTGTTTTCATTTTGACTTACATGCACTGCCTGTTCGGGCCACA
TCTTATTACACGTTCTTATTTTTCGGATTTACGGTCCAGTTTTTGTTTGT
CTGTTTtgcttgttttttatttttttatttttactgatcGTCCCTTGTGT
GCGCCAGGTGGATATGCGTCGGCCGCCGTGGCACAACAATGCATGACCAA
CGGAAACGGACCGGCGGCTGGATCACCGCTGGCCGCCGGCCGGACGACCG
GGTCGCCGACGGACGGGCCACCGTCCATGCAAACGATCGGTGCTGGCGGC
GGCGGGCAGCCGGGCGCGCAAAATCAGCAGAACGGGCCCAGCAACCCGAT
GGCGGCGCTGATGAGCGTCGCCGATAACCTGCCGCCCGGTTCTCCACAGA
GCGCCCGCGGCAGCCCGCCCGGTTCCATCGGTCCCACCGCCCAGGCGCCC
GGTGGTCCCAGGTCTGCATCCCGAGGATCTCAACACTCGCCAAACTCCAC
CGGTATGTATTCTTACACGCCAAATCTATCCATCCAYCCGTGACGTAGGA
TGAGCGCTGGTTTAAATGTATCGAAAGTTCAACCGACGGCACACACGTTT
ATTGCACTCCAcggaatttttataattttggtcaTCTCGGCACTCCCCCC
CCCACCAACCACTACAATTTCCCAACCACACCACTACAATGCCCTCCACG
ATGTGGATGCATACGCACCAGTYATTCTTTAAAAAACAAACCTACGTTTT
TTTTAgcagtacattttttaataacaacgagttctatatttcatttaaat
ttatctcgTTGGTCTGTAATTTCTTATTctgttcaaatattttgttgttg
tgcTGATAAAACAAACACGCGTATCGTTAAGTGGGCTCTCTAGTGTAAGG
GGGCGACCGTGTCAGATAAGGCCGCGTGTACATCTCTCTTCTTGTGCACT
TTAAATGCTCACCTTATCAATCTGTGCATGTGACAGTTTATTAGATTACT
CGTATTTATAGATTGATAGCTTTCCGTCGAATTTATCATCACGAGCGCAT
AGTTCAAGTACTTACACTGTTTTACGGCCGGTTGAAAAtagtaccataat
attatcttatcgtTCGCCGTTCGACGCAGCCGGCACAACATTATTAGGAA
ATTCTTTACATCCAATTAAATCGTATCTATTTGACTACGTAGTAATTGTA
CTACGGTTGAAATATGTGTCTAGATTGTTCGTTTTGTTACGATTCGTATC
TGGCCGCGTTTTTAATAGTCGTTAAGTAAAATGACTGATTAAAAAATTcc
tacattacatattattttatttttttgctcgtacattttcaattaatggC
AATAGATATTGATTACGTGGCGGAACTTTATCGCGGATTCATTgcttaat
tgtttaaaatataacttgtaAATTGGTCAAAAATGATTATCTCAGCGTGT
TACGGGATAAAAACCATAACATGTTGAAAAATGCGTGCGATAGTTTATTT
TTTCGACGCCGTGTCCACGACCTGTATTCGAAAGCCACAACGGCACCAGC
Caccattaataataagtaataatattgtgccgttttaataaagtaatatt
attattttgacacatTGGCTAACCCAACGGGTGTGCACTGAAAGTATTTT
TCTAATCTCGTTTATAACCGCTGCCGGAAATCCCCGTTCTCGCATCACAA
CTGCCCCCACCTTACATGAATTTTAATCGAAATAGATAGATTTGTAGTTA
AatgttagtgttttttttttttttatgataattttaaatctgtttGTATG
GTTTGTAATGagaaatttgaattttctatttttttttttaccatgtgTTT
AGAGTATCATAATATAGGAAAAGAGACCGCATACCGCCTTAAACATGCCT
TATACTCCTACAGtcataaattagaaaaataatcaaGTCCTGGATCTTTG
AGGAGTGgggatatacaaaatatttaaatgatttcaatattatttttgag
ataGTACAATAATTTctgttaaaatatcattaaacaaaataaaatcatat
tttactgaATCCCACTACACCacctattaactaataataattttcttata
gaGATATTCTTTTCTCTCCACTTCCGTACTTTAGTTTATGTTGCTTGAAG
TAGATTTGTTGATTTGCcgtccttttttttttctttaacaagTCGCGTTT
TGTAGGCGGTTCGTCCAGCGGACGTAGGTCATCCGGAAGTCGTCACGTCA
GCTCCACAACTGTGACATCTAGTGAGGCCAACGGCGGCAATGCTCCCGGT
TCCGGCGTGCCCGGCGTCAATGGTCCCGGCGTTAACGGCCCAGGTGGCGT
CGGCGGTCCAGCCGCCAACGGTAATGGTGGAGGGAGCGCTTTGAACGCAT
CAGTTCCTGTTGGCGGTGGTTCTGATGGCGTCGCATCCGGAACACCTATG
GACGGCACCACACCAACGTTGCCGCAAGTTCCACCCTCTGTGCCGCTGAC
GAATGCGTCGGCTGCCGCCGCGGCCGCGGCCGCAGCCGCCAACACAGCTA
CTCTCAAGTGCACGCTGTGCCAAGAGCGGTTGGAAGACACGCACTTTGTC
CAGTGCCCGTCCGTTCCYCATCACAAATTTTGTTTYCCGTGCTCGAGGGA
CAGCATCAAACGACAGGGAGCCGGCTCCGAGGTAAGACGATGGCCATCAA
ATTCTCAtctttttggtttttgtttttgtttttaaaactcgTATGGTTTT
TGCTTCGCAGGTGTATTGTCCTAGTGGCGAAAAATGCCCACTGGCTAATT
CAAACGTGCCCTGGGCTTTCATGCAAGGCGAGATAGCCACCATACTGGGC
GAAGAATTCAAAGTGAAAAAAGAACGAgactcataaattatattataatt
attattttttttatttttattgattacgtcatattatagtatatactgtg
TAAACATGTTtcacataatcatattattatgttatatgaaaCTTCACCTC
CTACAGATCCTATCAGATTATCAGACTTCTAGGCCTGGAAGGATCAAGGC
CTCGggtgtaaaatatgcatttatttattaagccctctgtatattacatt
atgtataaaataattttattacgttaCGTGAAAATGCCAATAGCTATTAT
AACGGTGTTGTACGTTCCCGTAGGGGCAATcctttatttttactttttag
gcaaaatttagaataattttagcCTTGTTATGTTCTTGTTTCCCCGCCGT
TTTCYTTCGAAATCTCGCTGTCGACGAGACATGGAAGGGAGACTAAAGGK
AGCAATCTTTGGCGTCAAGACTGAGTCAAGTCGtgtttgtattttacatt
ttttaagtaaaacaatTGTTAAGAAAAACGGTCCTAAGACTGTGCTAGTC
AAagcaaatatatgtatattagtattatatataaatcttaagtgcacaaa
atgtatattactgttttttagctttaaattatgtaccctaaagttaattt
ttaggCCGGTAGCGTTGAAACTAcgtttgaaatttttgttttcgaaCAGA
GATCAATTGTAAAGGAACTCACAATCTCGCTTGTTTGCATCTCgtgcgtg
tgtatatattttgtaaaaaatattatcgtacTAGATTTTGTGGTTTCTCC
CCACCCGTCGCCTCTTccctaatgtattttaataataataaaaatacaaa
tcggTAATCATCAga back to topCoding sequence (CDS) from alignment at JOTR01000076:226919..232983+ >rna4087 ID=rna4087|Name=XM_015508111.1|organism=Diuraphis noxia|type=CDS|length=1419bp|location=Sequence derived from alignment at JOTR01000076:226919..232983+ (Diuraphis noxia) ATGCAGATGAGTAAGCGACAACACTGTTACCTGTGCGACTTGCCCCGTAT GCCATGGGCAATGTTGCACGATTTCACCGAGCCCGTGTGCCGCGGGTGCG TCAACTACGAAGGAGCCGACCGCATTGAGTTGGTGATCGAAACGGCCAGG CAAATGAAACGGGCCCACGGATTCCAGGAATCAGCCCGGTCCACGGCCGT GGGCGGTGGGTCCACTGCCGTCAACGCGCACCACCCGAAAAACTCGCATC GACACGAAAACGGTACTCTGGAAGTGGTTGGATTGCCACCGCAAGCACAC CAGCTGGCCGCACGACAAACACAACAACCTCCACCGCCTCCGCCACCGGC CGCGGCCACATCGCACTATGCGGCCCTGCACCATCAGCGGTCCACACTCA TGGAATATCCCGGTAGGCCGGGTGGCGGTCACGTTGTCGACCACGAGGTG GCCATGAGTCGGACATCGGTGCGCTTGTCGCAGAgccagcagcaacaaca acaacagcaacagcaacagcaacagcaacaacaacaacagcaacagcaac acaTGGCGCATCACATTCCGAGCCGAGCCCAAGCCGGTGGCCAGGGCCTG AAACGCGGGCTGAGCACGCAAGCCGATGACGACGATCACCACTCAGAAGG CAACAAGCGCATGATGGAAGAACAGCAGCAGCGACCGCCGCTACAGAGAG GCGAATCGCTGCCAGCCGTCAGTCTCGCCGTTCCTTTCGTTGAGCGGTCG TTCAAAGCCGAACCTAAACACCCAATCAGGACCACATCATTCGACACGTC CACGTTCAAGACATCCAGCGGTTCGTCCAGCGGACGTAGGTCATCCGGAA GTCGTCACGTCAGCTCCACAACTGTGACATCTAGTGAGGCCAACGGCGGC AATGCTCCCGGTTCCGGCGTGCCCGGCGTCAATGGTCCCGGCGTTAACGG CCCAGGTGGCGTCGGCGGTCCAGCCGCCAACGGTAATGGTGGAGGGAGCG CTTTGAACGCATCAGTTCCTGTTGGCGGTGGTTCTGATGGCGTCGCATCC GGAACACCTATGGACGGCACCACACCAACGTTGCCGCAAGTTCCACCCTC TGTGCCGCTGACGAATGCGTCGGCTGCCGCCGCGGCCGCGGCCGCAGCCG CCAACACAGCTACTCTCAAGTGCACGCTGTGCCAAGAGCGGTTGGAAGAC ACGCACTTTGTCCAGTGCCCGTCCGTTCCYCATCACAAATTTTGTTTYCC GTGCTCGAGGGACAGCATCAAACGACAGGGAGCCGGCTCCGAGGTGTATT GTCCTAGTGGCGAAAAATGCCCACTGGCTAATTCAAACGTGCCCTGGGCT TTCATGCAAGGCGAGATAGCCACCATACTGGGCGAAGAATTCAAAGTGAA AAAAGAACGAgactcataa back to top
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