rna4091 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameXM_015508107.1
Unique Namerna4091
TypemRNA
OrganismDiuraphis noxia (Russian wheat aphid)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
JOTR01000076contigJOTR01000076:275262..276546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)2016-03-02
Properties
Property NameValue
GbkeymRNA
GeneLOC107161625
Model evidenceSupporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Productchromatin modification-related protein MEAF6
Transcript idXM_015508107.1
Cross References
External references for this mRNA
DatabaseAccession
GeneID107161625
GenbankXM_015508107.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
LOC107161625gene2792Diuraphis noxiageneJOTR01000076 275262..276546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
XM_015508107.1rna4091Diuraphis noxiapolypeptideJOTR01000076 275308..276316 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
XP_015363593.1cds3977Diuraphis noxiaCDSJOTR01000076 276242..276316 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
id35700id35700Diuraphis noxiaexonJOTR01000076 275262..275568 -
id35699id35699Diuraphis noxiaexonJOTR01000076 276242..276546 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>rna4091 ID=rna4091|Name=XM_015508107.1|organism=Diuraphis noxia|type=mRNA|length=612bp|location=Sequence derived from alignment at JOTR01000076:275262..276546- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.  
CGATTGCTAATCACTAATCAGTAATGTGTTGGAAAATCAAAATTAAAACG
ATAAATTGAATTGAATAACGAATAACAATTAACGGCGACGACGCATCACG
CATTACTTTRGTCAAGAAAAGCTGTAACGAAATATTATTTCATTGGTTTT
TATCGAATTCTCAATCGTGGTTTGGGTGGGTAACGTATTCGAACGGTAGA
TACTTGGCACGGTTTCCAAGCTAGCACGCCATGTCCAAGTCGTCTGGTTC
CAACGACTTGCGCACCGAGCTGGCCGAGCTCGTCAAACGCAAATCAGACA
TCGCTGAAACTTTAGCCAATCTTGAACGTCAAATTTATGCATTTGAAGGA
AGTTACTTAGAAGACACTCATTTATATGGTAATATCATTCGTGGTTGGGA
CAGATATCTTACATCAGCCAATAAACTYCCTAATTCTAAAAATGAACCGC
GTAACAGGAAATTTAAAGAAGCTGAGCGTCTTTTTTCCAAATCTTCCATT
ACTTCTATGGCTGTAAGTTTAGTTTTTATAAATAATAACTTTATAATGAA
GTTTAAAAAAAGATAAACCATTAAAATTGTTCAACTTTATGTTACTTCTT
AAACACATTTAA
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protein sequence of XM_015508107.1

>rna4091 ID=rna4091|Name=XM_015508107.1|organism=Diuraphis noxia|type=polypeptide|length=112bp
MSKSSGSNDLRTELAELVKRKSDIAETLANLERQIYAFEGSYLEDTHLYG
NIIRGWDRYLTSANKLPNSKNEPRNRKFKEAERLFSKSSITSMAVSLVFI
NNNFIMKFKKR.
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mRNA from alignment at JOTR01000076:275262..276546-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4091 ID=rna4091|Name=XM_015508107.1|organism=Diuraphis noxia|type=mRNA|length=1285bp|location=Sequence derived from alignment at JOTR01000076:275262..276546- (Diuraphis noxia)
CGATTGCTAATCACTAATCAGTAATGTGTTGGAAAATCAAAATTAAAACG
ATAAATTGAATTGAATAACGAATAACAATTAACGGCGACGACGCATCACG
CATTACTTTRGTCAAGAAAAGCTGTAACGAAATATTATTTCATTGGTTTT
TATCGAATTCTCAATCGTGGTTTGGGTGGGTAACGTATTCGAACGGTAGA
TACTTGGCACGGTTTCCAAGCTAGCACGCCATGTCCAAGTCGTCTGGTTC
CAACGACTTGCGCACCGAGCTGGCCGAGCTCGTCAAACGCAAATCAGACA
TCGCTGTAAGTTTTGTACGGAACCAAAGGTTTTTCAACGTTACACTCTAA
TTTGTGCCGATTGTTGTTTTAAATACTGGTAAATTACATATTATTTCGTG
TCTACGAGAGGTATATGTTATAAATTATAATCATTACACAACCTCCGTGA
CCATTCAAACTCGTCGATAATTGATATATTTAATTTGGTAATTYATACGT
AAATAATACAWAAGTTTGACCAGAAATACAGTACGTGTTGACACAACAAA
AATTATTATATTATGTTTGCCAGCAGTTGTGTACTTGTATATTTAATGTT
CAAAAGTAATTGAATTGTACAAAGTGTACGCACCAATAATATGTATCTAC
AAAGCTGGTTACATCTAAAGCGATTCGAACACGCGCGCCAAAGCTTAAAA
GAGTGATTTGGGAATAAAATATTATAATAATAGACATAAAYAGTACTCAG
TAATTGATCAAYTATTATGATTGTTCTAAAATCTCAAACTATAATAGGTT
ATGTTTATTCCTACTKTACTGTTTAATAAAATTATTAAATGAATAAAAAA
AAWGTGTTTTACATTGATATGTACATTTTATTATAATTTTTCACATTGAA
ATAAATTAAACAATTTTATTAGGGTATTTCTATTAATATTCGTTTGTTTT
TAAAGCTAATGATTATTTGTGGTTTTAGGAAACTTTAGCCAATCTTGAAC
GTCAAATTTATGCATTTGAAGGAAGTTACTTAGAAGACACTCATTTATAT
GGTAATATCATTCGTGGTTGGGACAGATATCTTACATCAGCCAATAAACT
YCCTAATTCTAAAAATGAACCGCGTAACAGGAAATTTAAAGAAGCTGAGC
GTCTTTTTTCCAAATCTTCCATTACTTCTATGGCTGTAAGTTTAGTTTTT
ATAAATAATAACTTTATAATGAAGTTTAAAAAAAGATAAACCATTAAAAT
TGTTCAACTTTATGTTACTTCTTAAACACATTTAA
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Coding sequence (CDS) from alignment at JOTR01000076:275262..276546-

>rna4091 ID=rna4091|Name=XM_015508107.1|organism=Diuraphis noxia|type=CDS|length=336bp|location=Sequence derived from alignment at JOTR01000076:275262..276546- (Diuraphis noxia)
ATGTCCAAGTCGTCTGGTTCCAACGACTTGCGCACCGAGCTGGCCGAGCT
CGTCAAACGCAAATCAGACATCGCTGAAACTTTAGCCAATCTTGAACGTC
AAATTTATGCATTTGAAGGAAGTTACTTAGAAGACACTCATTTATATGGT
AATATCATTCGTGGTTGGGACAGATATCTTACATCAGCCAATAAACTYCC
TAATTCTAAAAATGAACCGCGTAACAGGAAATTTAAAGAAGCTGAGCGTC
TTTTTTCCAAATCTTCCATTACTTCTATGGCTGTAAGTTTAGTTTTTATA
AATAATAACTTTATAATGAAGTTTAAAAAAAGATAA
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