rna4096 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameXM_015508105.1
Unique Namerna4096
TypemRNA
OrganismDiuraphis noxia (Russian wheat aphid)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
JOTR01000076contigJOTR01000076:324327..325403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)2016-03-02
Properties
Property NameValue
GbkeymRNA
GeneLOC107161623
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Productuncharacterized LOC107161623
Transcript idXM_015508105.1
Cross References
External references for this mRNA
DatabaseAccession
GeneID107161623
GenbankXM_015508105.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
LOC107161623gene2797Diuraphis noxiageneJOTR01000076 324327..325403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
XM_015508105.1rna4096Diuraphis noxiapolypeptideJOTR01000076 324610..325131 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
XP_015363591.1cds3981Diuraphis noxiaCDSJOTR01000076 324610..325131 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
id35715id35715Diuraphis noxiaexonJOTR01000076 324327..325189 -
id35714id35714Diuraphis noxiaexonJOTR01000076 325332..325403 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>rna4096 ID=rna4096|Name=XM_015508105.1|organism=Diuraphis noxia|type=mRNA|length=935bp|location=Sequence derived from alignment at JOTR01000076:324327..325403- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.  
CTATATCAATGTAATATATATACATAGGTAATAGACGCAGTTTTTGTTTT
TAACGAATGAGAATTTCAATAGGTACGACAAATGATCATCATTTGATGTA
TTAATCCGACAATAATATAATATAATAAAGATGGACGACTTCGACTTCGA
CAACTGTAGACGGCGTTCAGAGTTTTTCGAAGCATATGACTACCGCTGCG
GCGGCGACATTCGTCGGTCACCGTCAAGAATTGTGGACGCGCTGGACTTG
GCAGTGCAGCGACCGCCATCGACGGTTCACGTGCGCCCGCTGGAACGACT
GAGCGGACGATGGACGTTCAGGTCGATGCCGCAGGACGTCAACTTGGCGG
CGTACGGAAAACAGTTTTCCGGCGAGTGGCCGTCGTTTCGCGTGGAAATG
GATTGCGGCAGCAGCGCTGTGAACACGACGACAAGTGCACTGGTCAAGCG
GGACACGACCAAATATGACGAGACGCAGGACGGTGGCATATTGTCATGGA
GCGCAGATGAGAAGGATTCGTCAACCTCGAATCGTCCGAACGCGTTCGCG
GGTCAGTGTGTCACTTACGTCGGACGGGTCTTTTCTTGGGACTTTTATAG
GACGGTTTATCTGTTCTTTCAAAAAATCGTCAAATTTCGAAACCGTAGGT
GATTGACGTCGTAGTGCGTTGTGGAGCATGGGGTGGTTCAGATGTTTGTA
TAATTTTAATTCATAATATTATGTAATAATAACATATCTACTATCTAGTC
TTAATTCATGGGACATGGACATAATGAAACGTGCTTGGATAGTACTCGTC
ACTCGAGCAGTGTCAACTCTTTACCGTAAAATATTTACCTATACCGTGCC
ATCATCTAGTGTTATTTACTTAAACTAATGTATTATTAAGTATTATTTCT
TTCGGACTTGAATAGAAGATCGACATATATTTCTT
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protein sequence of XM_015508105.1

>rna4096 ID=rna4096|Name=XM_015508105.1|organism=Diuraphis noxia|type=polypeptide|length=174bp
MDDFDFDNCRRRSEFFEAYDYRCGGDIRRSPSRIVDALDLAVQRPPSTVH
VRPLERLSGRWTFRSMPQDVNLAAYGKQFSGEWPSFRVEMDCGSSAVNTT
TSALVKRDTTKYDETQDGGILSWSADEKDSSTSNRPNAFAGQCVTYVGRV
FSWDFYRTVYLFFQKIVKFRNRR.
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mRNA from alignment at JOTR01000076:324327..325403-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4096 ID=rna4096|Name=XM_015508105.1|organism=Diuraphis noxia|type=mRNA|length=1077bp|location=Sequence derived from alignment at JOTR01000076:324327..325403- (Diuraphis noxia)
CTATATCAATGTAATATATATACATAGGTAATAGACGCAGTTTTTGTTTT
TAACGAATGAGAATTTCAATAGGTGAGTAGGTATAGGTTTATAATAYTAT
TGTTGTTTATCGTTAAATGTTGCAAATATCTTATAATTGATATTATAATA
TCACATACCTTTTTCGCATCCCTGAACATTATTAAATAAGMTACCGTATT
ACCGTCTTATATAGGTACGACAAATGATCATCATTTGATGTATTAATCCG
ACAATAATATAATATAATAAAGATGGACGACTTCGACTTCGACAACTGTA
GACGGCGTTCAGAGTTTTTCGAAGCATATGACTACCGCTGCGGCGGCGAC
ATTCGTCGGTCACCGTCAAGAATTGTGGACGCGCTGGACTTGGCAGTGCA
GCGACCGCCATCGACGGTTCACGTGCGCCCGCTGGAACGACTGAGCGGAC
GATGGACGTTCAGGTCGATGCCGCAGGACGTCAACTTGGCGGCGTACGGA
AAACAGTTTTCCGGCGAGTGGCCGTCGTTTCGCGTGGAAATGGATTGCGG
CAGCAGCGCTGTGAACACGACGACAAGTGCACTGGTCAAGCGGGACACGA
CCAAATATGACGAGACGCAGGACGGTGGCATATTGTCATGGAGCGCAGAT
GAGAAGGATTCGTCAACCTCGAATCGTCCGAACGCGTTCGCGGGTCAGTG
TGTCACTTACGTCGGACGGGTCTTTTCTTGGGACTTTTATAGGACGGTTT
ATCTGTTCTTTCAAAAAATCGTCAAATTTCGAAACCGTAGGTGATTGACG
TCGTAGTGCGTTGTGGAGCATGGGGTGGTTCAGATGTTTGTATAATTTTA
ATTCATAATATTATGTAATAATAACATATCTACTATCTAGTCTTAATTCA
TGGGACATGGACATAATGAAACGTGCTTGGATAGTACTCGTCACTCGAGC
AGTGTCAACTCTTTACCGTAAAATATTTACCTATACCGTGCCATCATCTA
GTGTTATTTACTTAAACTAATGTATTATTAAGTATTATTTCTTTCGGACT
TGAATAGAAGATCGACATATATTTCTT
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Coding sequence (CDS) from alignment at JOTR01000076:324327..325403-

>rna4096 ID=rna4096|Name=XM_015508105.1|organism=Diuraphis noxia|type=CDS|length=522bp|location=Sequence derived from alignment at JOTR01000076:324327..325403- (Diuraphis noxia)
ATGGACGACTTCGACTTCGACAACTGTAGACGGCGTTCAGAGTTTTTCGA
AGCATATGACTACCGCTGCGGCGGCGACATTCGTCGGTCACCGTCAAGAA
TTGTGGACGCGCTGGACTTGGCAGTGCAGCGACCGCCATCGACGGTTCAC
GTGCGCCCGCTGGAACGACTGAGCGGACGATGGACGTTCAGGTCGATGCC
GCAGGACGTCAACTTGGCGGCGTACGGAAAACAGTTTTCCGGCGAGTGGC
CGTCGTTTCGCGTGGAAATGGATTGCGGCAGCAGCGCTGTGAACACGACG
ACAAGTGCACTGGTCAAGCGGGACACGACCAAATATGACGAGACGCAGGA
CGGTGGCATATTGTCATGGAGCGCAGATGAGAAGGATTCGTCAACCTCGA
ATCGTCCGAACGCGTTCGCGGGTCAGTGTGTCACTTACGTCGGACGGGTC
TTTTCTTGGGACTTTTATAGGACGGTTTATCTGTTCTTTCAAAAAATCGT
CAAATTTCGAAACCGTAGGTGA
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