rna4102 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameXM_015508099.1
Unique Namerna4102
TypemRNA
OrganismDiuraphis noxia (Russian wheat aphid)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
JOTR01000076contigJOTR01000076:345355..347273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)2016-03-02
Properties
Property NameValue
GbkeymRNA
GeneLOC107161616
Model evidenceSupporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Productlipopolysaccharide-induced tumor necrosis factor-alpha factor homolog, transcript variant X2
Transcript idXM_015508099.1
Cross References
External references for this mRNA
DatabaseAccession
GeneID107161616
GenbankXM_015508099.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
LOC107161616gene2801Diuraphis noxiageneJOTR01000076 345355..347273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
XM_015508099.1rna4102Diuraphis noxiapolypeptideJOTR01000076 345610..346888 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
XP_015363585.1cds3988Diuraphis noxiaCDSJOTR01000076 346786..346888 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
id35742id35742Diuraphis noxiaexonJOTR01000076 345355..345715 -
id35741id35741Diuraphis noxiaexonJOTR01000076 346561..346720 -
id35740id35740Diuraphis noxiaexonJOTR01000076 346786..346892 -
id35739id35739Diuraphis noxiaexonJOTR01000076 347137..347273 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>rna4102 ID=rna4102|Name=XM_015508099.1|organism=Diuraphis noxia|type=mRNA|length=765bp|location=Sequence derived from alignment at JOTR01000076:345355..347273- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.  
TGTGTGAATGTGAATTGTGAAATTACCATGGAAATTACTCAAATYAGTTA
TTAGTTATTACTTTATTATACAACGAAATAGTCTCAGACGTCTATAACTA
ATTTTAGTTTATATATATTATTGAATTATACGTGCAGAACCATGAGTGGG
GCATATACACCAGGAACAGTTCCAACAGCACCATATGGATGGAATCAGCA
GACAAGTGTTTCACCAGCAAGTCCTTACACCCCACAACCTGAATTTGTGA
AAGCACCATATGAACTTATTACCACGGTTGTTCCTGTTGGCCCCCACAGT
ACCCGAATGGTTTGCTCGAATTGCAGAAAAGAGATAACTACAAATATAAC
TAAGAAACCGAGTACAATGGCTTATATATCCAGTTTATTGTGTTGTGTGT
TTGGATGTTTCTGGGGTCCATGCTTAATACCGTTTTGTATGGATCAATGT
TTAAATGTTGAACATAAATGCCCTAAATGTGAAGTTTATCTAGGGCAGTA
TATACGATAAGTTGTGTATATTTTTAACAAAAATCTTGATAAATGTTCAA
ATTAACAAACAGTTGTTACTTACAAAACTTAGTATACTAATGCTTTCTCA
ATGAGGCAGCTTGTTTGACGTATTTAAAAGACATTATGTATACTTACTAA
CAATTATTGTCTTTGGTGACTTGTAATTATGTGCCTTAAAGTATTATTGG
AAATATAAAATCTCTAAAACTACTTATAAATTAAAAAAAGATTTAATATC
ATATTAGAATTTAGT
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protein sequence of XM_015508099.1

>rna4102 ID=rna4102|Name=XM_015508099.1|organism=Diuraphis noxia|type=polypeptide|length=123bp
MSGAYTPGTVPTAPYGWNQQTSVSPASPYTPQPEFVKAPYELITTVVPVG
PHSTRMVCSNCRKEITTNITKKPSTMAYISSLLCCVFGCFWGPCLIPFCM
DQCLNVEHKCPKCEVYLGQYIR.
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mRNA from alignment at JOTR01000076:345355..347273-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4102 ID=rna4102|Name=XM_015508099.1|organism=Diuraphis noxia|type=mRNA|length=1919bp|location=Sequence derived from alignment at JOTR01000076:345355..347273- (Diuraphis noxia)
TGTGTGAATGTGAATTGTGAAATTACCATGGAAATTACTCAAATYAGTTA
TTAGTTATTACTTTATTATACAACGAAATAGTCTCAGACGTCTATAACTA
ATTTTAGTTTATATATATTATTGAATTATACGTGCAGGTATAGTATTTTT
ATTGTGTTATTACGGAAAGCTTTTATACATTATTTAATAATAGAAAGTGT
TAAAAAGTCTTGGCCTATAAAATTGCTCTAATATCTCGTTTTGTTTGACC
TTAATGCCCAAAACGGAAATTGATTATCTGTATTAAGTTTCGAAGTGTAT
TTAATATATTTTTAAATTACACACACGTTATAAGTATTCTGTTATTAATT
TATTTTGTAAATAATTCTAAGGTATTTATAGAACCATGAGTGGGGCATAT
ACACCAGGAACAGTTCCAACAGCACCATATGGATGGAATCAGCAGACAAG
TGTTTCACCAGCAAGTCCTTACACCCCACAACCTGAATGTAATTGACTAC
TCCACAAATCATGATTTTTTTTTTTTCTAATATTTTGAAGTTATTTTATT
TAGTTGTGAAAGCACCATATGAACTTATTACCACGGTTGTTCCTGTTGGC
CCCCACAGTACCCGAATGGTTTGCTCGAATTGCAGAAAAGAGATAACTAC
AAATATAACTAAGAAACCGAGTACAATGGCTTATATATCCAGTTTATTGT
GTTGTGTGTTTGGGTAATAAACAAATTAATTAATTATTCTTAAAATTTTA
AATTAGTATTCATTTTTAATTAGATTAAAATACACTTAAAAGGATGTACA
CGGGCATTTGTTGGCTTTGTTTTACAAGTGGGTAACRTAGCAAATTTACT
CTATAGATCATGTTAAGCTTTGTTAGTCAAAAAAGTGATTTRACCTATTA
TGAAACATGATGGTAACAACAGTTGTGTTTTTATGTTGTTTTTTAAAAAA
AAAAATTAAATTTTTAGCAAGTTTTGAGTATATAATAAAGTGTAAATTAA
AAATGTTCATAACTATTTAAAAACTAAATTATTTGTAAAAATCTCTCTTA
CGAACACAGATAATATCCTTACTATTAAGTTTCATAATAGGTCGAATCAC
TCCAATTTTCTAACTTACAAAACTAAGTGTGATCTACTGAGTGTAAATTT
GCTATTTTATTAATTTAAAAGACAAAGACAACAAATGCCTTTGAAGCGTC
CTCTTAACATACATATTATGTATATTTTAGTATCCCTTCTTAACAATAAT
TAATTCTATAATTCTATTACAGTCTGGTTATACCAATGTAAACTTTCAAT
TTTTAAATGGGAAACTTATTTTTAAAAAACAGACCAATGATAATCACAGT
CTGTTTTTGTATTGTTATTATGCTTATTATATTTTGATTGAATATTAATA
TTCTATCAAATATTTCTGATGGGTTTTAATAAAATAACTGTACTGTGTAT
GCTCATTCTTCAAAAAAGATAGTCTTATCTTTAATTTTTTTTATAATTTA
AGGTTAACTATTTGTTTAAATTGTTATAATGATTACTTTATTCATTTATG
TTTTTCAGATGTTTCTGGGGTCCATGCTTAATACCGTTTTGTATGGATCA
ATGTTTAAATGTTGAACATAAATGCCCTAAATGTGAAGTTTATCTAGGGC
AGTATATACGATAAGTTGTGTATATTTTTAACAAAAATCTTGATAAATGT
TCAAATTAACAAACAGTTGTTACTTACAAAACTTAGTATACTAATGCTTT
CTCAATGAGGCAGCTTGTTTGACGTATTTAAAAGACATTATGTATACTTA
CTAACAATTATTGTCTTTGGTGACTTGTAATTATGTGCCTTAAAGTATTA
TTGGAAATATAAAATCTCTAAAACTACTTATAAATTAAAAAAAGATTTAA
TATCATATTAGAATTTAGT
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Coding sequence (CDS) from alignment at JOTR01000076:345355..347273-

>rna4102 ID=rna4102|Name=XM_015508099.1|organism=Diuraphis noxia|type=CDS|length=369bp|location=Sequence derived from alignment at JOTR01000076:345355..347273- (Diuraphis noxia)
ATGAGTGGGGCATATACACCAGGAACAGTTCCAACAGCACCATATGGATG
GAATCAGCAGACAAGTGTTTCACCAGCAAGTCCTTACACCCCACAACCTG
AATTTGTGAAAGCACCATATGAACTTATTACCACGGTTGTTCCTGTTGGC
CCCCACAGTACCCGAATGGTTTGCTCGAATTGCAGAAAAGAGATAACTAC
AAATATAACTAAGAAACCGAGTACAATGGCTTATATATCCAGTTTATTGT
GTTGTGTGTTTGGATGTTTCTGGGGTCCATGCTTAATACCGTTTTGTATG
GATCAATGTTTAAATGTTGAACATAAATGCCCTAAATGTGAAGTTTATCT
AGGGCAGTATATACGATAA
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