rna4105 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	XM_015508089.1
Unique Name	rna4105
Type	mRNA
Organism	Diuraphis noxia (Russian wheat aphid)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
JOTR01000076	contig	JOTR01000076:352800..355304 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)	2016-03-02

Properties


Property Name	Value
Gbkey	mRNA
Gene	LOC107161609
Model evidence	Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Product	ubiquinone biosynthesis protein COQ4 homolog, mitochondrial
Transcript id	XM_015508089.1

Cross References

External references for this mRNA


Database	Accession
GeneID	107161609
Genbank	XM_015508089.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
LOC107161609	gene2803	Diuraphis noxia	gene	JOTR01000076 352800..355304 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
XM_015508089.1	rna4105	Diuraphis noxia	polypeptide	JOTR01000076 353679..354813 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
XP_015363575.1	cds3990	Diuraphis noxia	CDS	JOTR01000076 354654..354813 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
id35758	id35758	Diuraphis noxia	exon	JOTR01000076 352800..353844 -
id35757	id35757	Diuraphis noxia	exon	JOTR01000076 353917..354010 -
id35756	id35756	Diuraphis noxia	exon	JOTR01000076 354074..354203 -
id35755	id35755	Diuraphis noxia	exon	JOTR01000076 354280..354382 -
id35754	id35754	Diuraphis noxia	exon	JOTR01000076 354469..354565 -
id35753	id35753	Diuraphis noxia	exon	JOTR01000076 354654..354844 -
id35752	id35752	Diuraphis noxia	exon	JOTR01000076 355084..355304 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at JOTR01000076:352800..355304-
coding sequence from alignment at JOTR01000076:352800..355304-

spliced messenger RNA

>rna4105 ID=rna4105|Name=XM_015508089.1|organism=Diuraphis noxia|type=mRNA|length=1881bp|location=Sequence derived from alignment at JOTR01000076:352800..355304- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.  
AATTTTATAATATTAAGGCCAACTTGATGAATATTTTCTATTAGCTGACT
GTTATCATTGATAACAGACGCCATTAATCATCTGAATTTGTATATTTATC
AAGAATTCAAGATATAGTATTGATGACATCTTTACCCGTGGGCCGTGGCC
CGTGAGCAGTCAGTCAGTCAGTGCCCGTGCCCGTGAGTCAGTGACATTGA
CCAAAATTGTAGAATCGCAGAATCAAGTTCACAATACCTATTTTAATTCA
AAATGTTGAAAAAAAATATCATTTTAAATAATCAAATGCACCGATATATG
TCTGATTTTGTAACCCAATATAACGAAAATCATATACCCACCACACCAAT
ACAAAAATTATTATTATCAATCGGTTCTGCAACTGTTTCATTGTTTGATC
CTCAAAGAGCAGATATGATTGCCACTATGGGTGAAACTACTGGAACGCAT
GCATTGAAATATATAAGAGATAAAATGATTAATAATCCTGAAGGCAACGA
AATATTACAGTTACAACCACGAATTAACACGTCTACAGTTGATCTTGAAA
AGCTAAAATACATGCCAAAGAATACTCTCGGATATGCTTACTTTAAATTT
TTAGATGATAATAAAGTAACCCCAGACTCCCGAGGATCAGTACAATTCAT
TGAYGATATTCAATTAGCATATGTAATGCAAAGATACAGAGAAGTACATG
ATTTATTTCACACCGTGTTGGGAATGCCTACAAATATGTTAGGAGAAGTA
ACAGTAAAATGGATTGAAGCATTTCAGACAAAGTTACCTATGACTCTAAC
TGGAGGTCTTTTTGGAGCTGTACGACTTAAACCAAAGCAAAGAGAACAGT
ATGTAAAACATTATTTACCATGGGCTATTCAAACAGGACTAAACAGTAAT
TTTTTGCTAAATATTTATTTTGAAAAACGATGGGAACAATCAATAGAAGA
ACTACAAAAAGAATTAAATATAAAACCTTTAGAAATAATTGATTTAAAAT
GAAAATTGTTGCTGTRTGGCTGTGCCTTAGTAGTTTTAGTATCTTGTATT
GTATTTTTTTTTTTCTAACTTAGTATAAATTTATTCATTTGACTTAATCA
ATGTTTGGGGCAAATACAAATTCTGTAAAATAAAATAAATATTAATTTAG
TTTAAAGTAAAAAAAATAATGTTATAGGCGCACTGACCATTATGTGCTTC
AAATGTTTTAGGCTGGAGTTGGGCCATAGGAATTTGTTCTGTTTTTGTGG
ATTTTATGGTATTAGAAATAAGTTGAAGTTTAAGAGACTCATACTTCGAC
TAAAATATAATTATAATTTTAATTTTACAATGAACTAATATTTTTATATT
GATTTCATATTCAATTTGCTTCTTTTATATAACAATGATTACCTATCTAT
ATATTAATAAGAGATATTTGAAATTGAAATACCTACTCAACTCCTAGGTA
TCTAAAAATTAAAATTAGTATTTAATATAGTTTTTGAAAATTTATAATCT
WTATCTATACTACGTGTTCAATTAGCCGGCAACTAAATCGTGAAATGTAA
AATATAAATTATAATTAAGGTAACCTAACCTAATCTTAGGATGTAAAACA
ATATTATTCTTTAAAAGTACAATCATTTTTATGCTCCTTAGTAATTGATG
ACACTTTAACTATATGTGTGACTATGATTGCTATTTTATGAATTTGGTAA
TTATTAAAAGTGTATACATATTAAATCCTAATGGGTATAATATAATGTTC
TGTTAATTTTATTTTATTATTACTTGAACTTGATGTAATATTCTACTTTT
TTCGATCAGCTTCTCTTCTATCTCTTGGGTTTTTCGTCTTTGTAATTCAG
CATCTTTCAAAGCTGCTATAAATGTAATTGT

protein sequence of XM_015508089.1

>rna4105 ID=rna4105|Name=XM_015508089.1|organism=Diuraphis noxia|type=polypeptide|length=250bp
MLKKNIILNNQMHRYMSDFVTQYNENHIPTTPIQKLLLSIGSATVSLFDP
QRADMIATMGETTGTHALKYIRDKMINNPEGNEILQLQPRINTSTVDLEK
LKYMPKNTLGYAYFKFLDDNKVTPDSRGSVQFIDDIQLAYVMQRYREVHD
LFHTVLGMPTNMLGEVTVKWIEAFQTKLPMTLTGGLFGAVRLKPKQREQY
VKHYLPWAIQTGLNSNFLLNIYFEKRWEQSIEELQKELNIKPLEIIDLK.

mRNA from alignment at JOTR01000076:352800..355304-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4105 ID=rna4105|Name=XM_015508089.1|organism=Diuraphis noxia|type=mRNA|length=2505bp|location=Sequence derived from alignment at JOTR01000076:352800..355304- (Diuraphis noxia)
AATTTTATAATATTAAGGCCAACTTGATGAATATTTTCTATTAGCTGACT
GTTATCATTGATAACAGACGCCATTAATCATCTGAATTTGTATATTTATC
AAGAATTCAAGATATAGTATTGATGACATCTTTACCCGTGGGCCGTGGCC
CGTGAGCAGTCAGTCAGTCAGTGCCCGTGCCCGTGAGTCAGTGACATTGA
CCAAAATTGTAGAATCGCAGAGTAAATATTTCATATAAGAGAATAATAAA
TATCAATAATTATTTATTATTAATACCGTTGGCCAACACTATCAATATCC
AATRAAAATAGCGTCAMGTCAATCGTTGATTAATTTTAATAACACAAATT
AAAATACTATTTTAATTTAACACTAAGAAATTCGTAGTCTTTTTAATGAA
AATAATTATTATTACTATAATAGTTACTACGGATTAAGATCAATTTTAAA
ATTTTTTTAGATCAAGTTCACAATACCTATTTTAATTCAAAATGTTGAAA
AAAAATATCATTTTAAATAATCAAATGCACCGATATATGTCTGATTTTGT
AACCCAATATAACGAAAATCATATACCCACCACACCAATACAAAAATTAT
TATTATCAATCGGTTCTGCAACTGTTTCATTGTTTGATCCTCAAAGAGCA
GGTAATAATACTTTAATAAATTGGAAAACTAATTTTATTATATATTTATA
TTGGCTTTTTAAAAAAACTATATACCTATTGTATTTTAGATATGATTGCC
ACTATGGGTGAAACTACTGGAACGCATGCATTGAAATATATAAGAGATAA
AATGATTAATAATCCTGAAGGCAACGAAATATTACAGTATATAGTATTAA
ATTCTTAAAATTATCTGTATATTTCTATTCTGTTTTTTATAGATTATAAT
TCCATAAAATTCTTTTTTGAAGGTTACAACCACGAATTAACACGTCTACA
GTTGATCTTGAAAAGCTAAAATACATGCCAAAGAATACTCTCGGATATGC
TTACTTTAAATTTTTAGATGATAATGTATGTTAAGATATTTTTAATATTT
TGATATTATATCAATGAAGTGCAAAGCCGTAAATATTCCATTTTTGTCTA
GAAAGTAACCCCAGACTCCCGAGGATCAGTACAATTCATTGAYGATATTC
AATTAGCATATGTAATGCAAAGATACAGAGAAGTACATGATTTATTTCAC
ACCGTGTTGGGAATGCCTACAAATATGTTAGGTAATGTGGTGTTTTCTTA
TTTATTAAATATTAATGTGTAATATATATACTATCGTTATTTAGGAGAAG
TAACAGTAAAATGGATTGAAGCATTTCAGACAAAGTTACCTATGACTCTA
ACTGGAGGTCTTTTTGGAGCTGTACGACTTAAACCAAAGTAAACATTTAT
ATACTTAATATACTTCTACTCTAGATTGTTCAATTTAATGCCCATTTACA
TAATTTTCAGGCAAAGAGAACAGTATGTAAAACATTATTTACCATGGGCT
ATTCAAACAGGACTAAACAGTAATTTTTTGCTAAATATTTATTTTGAAAA
ACGATGGGAACAATCAATAGAAGAACTACAAAAAGAATTAAATATAAAAC
CTTTAGAAATAATTGATTTAAAATGAAAATTGTTGCTGTRTGGCTGTGCC
TTAGTAGTTTTAGTATCTTGTATTGTATTTTTTTTTTTCTAACTTAGTAT
AAATTTATTCATTTGACTTAATCAATGTTTGGGGCAAATACAAATTCTGT
AAAATAAAATAAATATTAATTTAGTTTAAAGTAAAAAAAATAATGTTATA
GGCGCACTGACCATTATGTGCTTCAAATGTTTTAGGCTGGAGTTGGGCCA
TAGGAATTTGTTCTGTTTTTGTGGATTTTATGGTATTAGAAATAAGTTGA
AGTTTAAGAGACTCATACTTCGACTAAAATATAATTATAATTTTAATTTT
ACAATGAACTAATATTTTTATATTGATTTCATATTCAATTTGCTTCTTTT
ATATAACAATGATTACCTATCTATATATTAATAAGAGATATTTGAAATTG
AAATACCTACTCAACTCCTAGGTATCTAAAAATTAAAATTAGTATTTAAT
ATAGTTTTTGAAAATTTATAATCTWTATCTATACTACGTGTTCAATTAGC
CGGCAACTAAATCGTGAAATGTAAAATATAAATTATAATTAAGGTAACCT
AACCTAATCTTAGGATGTAAAACAATATTATTCTTTAAAAGTACAATCAT
TTTTATGCTCCTTAGTAATTGATGACACTTTAACTATATGTGTGACTATG
ATTGCTATTTTATGAATTTGGTAATTATTAAAAGTGTATACATATTAAAT
CCTAATGGGTATAATATAATGTTCTGTTAATTTTATTTTATTATTACTTG
AACTTGATGTAATATTCTACTTTTTTCGATCAGCTTCTCTTCTATCTCTT
GGGTTTTTCGTCTTTGTAATTCAGCATCTTTCAAAGCTGCTATAAATGTA
ATTGT

Coding sequence (CDS) from alignment at JOTR01000076:352800..355304-

>rna4105 ID=rna4105|Name=XM_015508089.1|organism=Diuraphis noxia|type=CDS|length=750bp|location=Sequence derived from alignment at JOTR01000076:352800..355304- (Diuraphis noxia)
ATGTTGAAAAAAAATATCATTTTAAATAATCAAATGCACCGATATATGTC
TGATTTTGTAACCCAATATAACGAAAATCATATACCCACCACACCAATAC
AAAAATTATTATTATCAATCGGTTCTGCAACTGTTTCATTGTTTGATCCT
CAAAGAGCAGATATGATTGCCACTATGGGTGAAACTACTGGAACGCATGC
ATTGAAATATATAAGAGATAAAATGATTAATAATCCTGAAGGCAACGAAA
TATTACAGTTACAACCACGAATTAACACGTCTACAGTTGATCTTGAAAAG
CTAAAATACATGCCAAAGAATACTCTCGGATATGCTTACTTTAAATTTTT
AGATGATAATAAAGTAACCCCAGACTCCCGAGGATCAGTACAATTCATTG
AYGATATTCAATTAGCATATGTAATGCAAAGATACAGAGAAGTACATGAT
TTATTTCACACCGTGTTGGGAATGCCTACAAATATGTTAGGAGAAGTAAC
AGTAAAATGGATTGAAGCATTTCAGACAAAGTTACCTATGACTCTAACTG
GAGGTCTTTTTGGAGCTGTACGACTTAAACCAAAGCAAAGAGAACAGTAT
GTAAAACATTATTTACCATGGGCTATTCAAACAGGACTAAACAGTAATTT
TTTGCTAAATATTTATTTTGAAAAACGATGGGAACAATCAATAGAAGAAC
TACAAAAAGAATTAAATATAAAACCTTTAGAAATAATTGATTTAAAATGA

Metabolic Data

View metabolic data for rna4105 on AphidCyc