rna4108 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	XM_015508095.1
Unique Name	rna4108
Type	mRNA
Organism	Diuraphis noxia (Russian wheat aphid)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
JOTR01000076	contig	JOTR01000076:362798..367014 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)	2016-03-02

Properties


Property Name	Value
Gbkey	mRNA
Gene	LOC107161614
Model evidence	Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Product	surfeit locus protein 1
Transcript id	XM_015508095.1

Cross References

External references for this mRNA


Database	Accession
GeneID	107161614
Genbank	XM_015508095.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
LOC107161614	gene2805	Diuraphis noxia	gene	JOTR01000076 362798..367014 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
XM_015508095.1	rna4108	Diuraphis noxia	polypeptide	JOTR01000076 362926..366897 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
XP_015363581.1	cds3993	Diuraphis noxia	CDS	JOTR01000076 366832..366897 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
id35789	id35789	Diuraphis noxia	exon	JOTR01000076 362798..363001 -
id35788	id35788	Diuraphis noxia	exon	JOTR01000076 364915..365058 -
id35787	id35787	Diuraphis noxia	exon	JOTR01000076 365178..365351 -
id35786	id35786	Diuraphis noxia	exon	JOTR01000076 365410..365601 -
id35785	id35785	Diuraphis noxia	exon	JOTR01000076 365662..365783 -
id35784	id35784	Diuraphis noxia	exon	JOTR01000076 365861..365965 -
id35783	id35783	Diuraphis noxia	exon	JOTR01000076 366832..367014 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at JOTR01000076:362798..367014-
coding sequence from alignment at JOTR01000076:362798..367014-

spliced messenger RNA

>rna4108 ID=rna4108|Name=XM_015508095.1|organism=Diuraphis noxia|type=mRNA|length=1124bp|location=Sequence derived from alignment at JOTR01000076:362798..367014- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.  
ATAGAAGGAATTGAATATTTTCAATTTTGTTTTTGTCAAATCTCAATTCT
CTTCTCCAGTCTCTAGTATATATTAACATATTAGTACTTAATAACTTGGA
AGTTATCAAAGTTCATCATGATTTGTAGAAAATATTTTTCAAATTTTTTA
GTGAAACAGAATTTTACTTCATCTAAACTAATTCTAACTAGTTTGACTAA
AAATTCTAGTATGACAGCCAAATCAGTTGAATTAAATTCATTTAGTAGAA
GGAAAAGTARTAATACAGATATTGGATGGATTTTACTAGTACTACCAATT
TCTGCATTTGGACTGGGTACATGGCAAGTTAAACGAAAAATATGGAAAGA
AAATCTGATTCAAGAACTCAAAACTAAAACTACACTCCCTGCATTGGACT
TTCCGGAAAACGAAGAAGAACTTACWAAACTTGAATATCGTAGAGTAAAA
GTTGTAGGTGAATTTGACCATTCAAAAGAATTGTACTTAGGTCCTAGATC
CTGTTTAACTGATGGTGGAGCTGAGAATAGTAACGGATTATTTTCTGGAT
CTACAAAAAGTGGTTATTATGTCATCACACCTTTTAAACTGTCAAATAAA
CCTTTCTCAATTTTAGTGAACCGTGGTTGGGTTTCTATGAAAAATAAAAA
TCCTGCATCTCGAATTTCTGGCCAAGTTGCAGGTGAAATTGAACTAGAAG
GTGTCGTTCGGTTAACTGAACCAAGACCTCAGTTTGTATCCAAGAATGTA
GCAGATTCTCGTTTTTGGGCATATAGAGATTTAGAGGCAATGTCAAAATT
AGTTGATAGTGAACCTATTATGATTGATGCTGTAATTGAATGTAGTATTC
CTGGAGGTCCAGTTGGCGGTCAAACAAATATTTCATTGAGAAACGAACAT
GTCTCTTATATTATTACTTGGTATGGTTTAGCAATTGCAACAGGATATAT
GTGGTATGCAAAATATTCACATGCATTAAGATCAATTATCAAATAAAAAC
TATTAATTTATGTATCTCAGTCAAAATAAACATACTAAAAATAATTTTAA
GTATTATTCATCAGCTATTTGTTCCACAATTATTGTGGAAATATAAATTA
TTTATACTTTACTATGGTCAAATT

protein sequence of XM_015508095.1

>rna4108 ID=rna4108|Name=XM_015508095.1|organism=Diuraphis noxia|type=polypeptide|length=293bp
MICRKYFSNFLVKQNFTSSKLILTSLTKNSSMTAKSVELNSFSRRKSXNT
DIGWILLVLPISAFGLGTWQVKRKIWKENLIQELKTKTTLPALDFPENEE
ELTKLEYRRVKVVGEFDHSKELYLGPRSCLTDGGAENSNGLFSGSTKSGY
YVITPFKLSNKPFSILVNRGWVSMKNKNPASRISGQVAGEIELEGVVRLT
EPRPQFVSKNVADSRFWAYRDLEAMSKLVDSEPIMIDAVIECSIPGGPVG
GQTNISLRNEHVSYIITWYGLAIATGYMWYAKYSHALRSIIK.

mRNA from alignment at JOTR01000076:362798..367014-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4108 ID=rna4108|Name=XM_015508095.1|organism=Diuraphis noxia|type=mRNA|length=4217bp|location=Sequence derived from alignment at JOTR01000076:362798..367014- (Diuraphis noxia)
ATAGAAGGAATTGAATATTTTCAATTTTGTTTTTGTCAAATCTCAATTCT
CTTCTCCAGTCTCTAGTATATATTAACATATTAGTACTTAATAACTTGGA
AGTTATCAAAGTTCATCATGATTTGTAGAAAATATTTTTCAAATTTTTTA
GTGAAACAGAATTTTACTTCATCTAAACTAATTGTAAGTTTATGGTTTTT
GTGTACAAGTATAGTTTACTTAATACCATGAGTAGCTTTACAATATCTCT
GGATTAATATGTTATATTTAACTCTGAATTTATTTATTTTTTAATGTTCA
TGTTTACTTTTTAAAGTAAGGTTGTTAGTAAGAAATTACTATTGCACAAT
ATTAACTAATAATTTTTAATTCAATATAAAAAATTGTTCGTTGTAAAAGT
GGATTAGTTTTATAATTTCTCATTAAATTAACATGTACACTGTGGATGAT
GCCAAAATACGTTATTTTATATTGTCTACATATTTTGAATGACACCACTT
GGTACACATACTTTGTTATTAAATACACTACAATTTGTTATTGTTGCTAT
TAAGCTATTCATTTTTTGTTAGTGTCCTAATTTTAATTTTTCAGCTCAAA
AGATATTTTTTTAATCGTAATTTTTCAGTATCATTAATTCAATTATAATA
ATATTCAGTCGATCTATTAATAAATATATGATAAACTAAATTTGAAATCG
GAATTGTGTTGTTCAATGTGTTATGCTTGATGATATTATTTTAACTYATA
AAAAATAGTAAAATCAAATGTATTTAAACATAAAATTAGAAATTATATAC
ATATATATGTATGCCTTTAAATCTCAATTCTTGCTTGAACTTAATAATAA
TTTAAAAAAAATTCAAGGTTAACATTTAACCTAAATATTACTGTCTTTCT
ATATTTGAACACTAATAGTTAATAATTTAGTAATTTGTAAGTAAAATAAA
ATTATATATTATATGTAKTAATACAAAACTATACTGATCAAAACACTGTG
CAATTTTTATAAATTATGAACATTTATCTTATCTGTTTTAATTGTTTAGC
TAACTAGTTTGACTAAAAATTCTAGTATGACAGCCAAATCAGTTGAATTA
AATTCATTTAGTAGAAGGAAAAGTARTAATACAGATATTGGATGGATTTT
ACTAGTAAGATTAAAACTTTCCACTTTATTATTTCCACATTATTTATTTT
TATTAAATGAAAAATATGATTTGTATTGAAGGTACTACCAATTTCTGCAT
TTGGACTGGGTACATGGCAAGTTAAACGAAAAATATGGAAAGAAAATCTG
ATTCAAGAACTCAAAACTAAAACTACACTCCCTGCATTGGACTTTCCGGA
AAAGTAAGAATCTTTTCCTGTTTTATTATAGTCAAATATTATTTAGCTTC
TTAATTTTTATAGCGAAGAAGAACTTACWAAACTTGAATATCGTAGAGTA
AAAGTTGTAGGTGAATTTGACCATTCAAAAGAATTGTACTTAGGTCCTAG
ATCCTGTTTAACTGATGGTGGAGCTGAGAATAGTAACGGATTATTTTCTG
GATCTACAAAAAGTGGTTATTATGTCATCACACCTTTTAAACTGTCAAAT
AAACCGTAAGAAATGTTTTCATTCATATAATTTCACTTATATACTAATAG
TAATTGTTTTAAGTTTCTCAATTTTAGTGAACCGTGGTTGGGTTTCTATG
AAAAATAAAAATCCTGCATCTCGAATTTCTGGCCAAGTTGCAGGTGAAAT
TGAACTAGAAGGTGTCGTTCGGTTAACTGAACCAAGACCTCAGTTTGTAT
CCAAGAATGTAGCAGATTCTCGTTTTTGGGCATATAGGTACATATTTATA
CGATTTTTAAATCTGGTTGCAATAATATGTTTAAAATATTTGTTTTWAAA
AAATTCATTGAACTAAATATATAGATCAATAATTTAGTATCGATTTATTA
TTATAGAGATTTAGAGGCAATGTCAAAATTAGTTGATAGTGAACCTATTA
TGATTGATGCTGTAATTGAATGTAGTATTCCTGGAGGTCCAGTTGGCGGT
CAAACAAATATTTCATTGAGAAACGAACATGTCTCTTATATTATTACTTG
GTAAGATAAATAATTTTTCATATTATTTCTTATTTTCAAATCCATCTTAA
ATATATATTCTGATTTGGATTGAATTCCAGTTTTTATTTTATTTATCAAA
TTAATTTTAGTTTTTTGGTGCCTGGTGTGACAATTAACATTTAAATTAAT
TGTTTAATACTAAACCAATCATAACAAAATATTTTGTTTGTATATTTACT
GTAAATTTGTGATCCAAAAAATTTAAAATTTAAATTAATATTAATTTTCA
AGTGCGTCTTGAAAAATAAAAATAAAATTAAGAAATAGGTATAGAAATGT
TTACATAAAACCAGTTTTATATGAAATCAATGTTTTTTTTATGTAACAAA
AAAAAAATATGAATAAATAACAATTGATCGCATTCATGACATTTTGGCTA
AAAGTTTATATTATGGATAAGCCATATAATATCCAAAATATTTTTACTAT
TATTGAACTATTTATAAAAAWTTTTAATTATTTTTTAGCTGTTTTTTGAT
AATTGTTGAAGTGKMAAAGAGCTTGACATTTGAATACAAGGTTCCTCATA
AATTTGTTGTAATAACAATTTGAAAAAAATATTAAAGATATATAGACAGA
ATTTTGTATATGAATTTAAAGTCGAAATTTGTATATGGATAAAACATTTT
AAACAACGTTTCTCATAAGTAGTTAATAATGTAACTAAAAAATCTAAAAA
TAATGTTATCATAAAATCTTGGTATTTTAAATTCAAATTTGGACAAAATA
ATCAGATATTTATATTAAGAATCACAATGTTAGTTTTTTTTTTTGTAAAA
CAAAAATATTTTTCACAGGGATTTATAAAATTATAAATTAAACTATATGC
ACTGACATTTCCAAAATATTTTAATATTTTTAAACTACTATTTATTTATA
CTATGAACYATCTGCACTGTTCAACAGCTAGGTGGTATTTACTCATAAAT
TACCTAATCACAACAATAAAATATCATTGAATTATAGACTATTATGTGAT
GAATATAATTAATTYAATGTATTTGGTCAAATTTAATCAACTTTCTATCA
TACTTCTAGAAAACTAATTTGCTTTAACAATAATATCAAAAAACATATGT
TGTAATTACTTGATATAGACCAACTGTGCTTYGAGTCATTTTTTGTATTC
AATGATAAATTATTGAATTAAAATTTGTGACATCCATTACAGTTACCCAC
TTGACACCTACTGAACAGCATAGCAGTATTAACTTGCCCATTTTAGATTC
TGAGCGGAGCAATGAATGTATTGATTTTACCATTACGTGTGTTTTTTTTT
TGTGTCTGTCATCACGTTTTGGGGCAGTAAAAGTGTTAAGACAAATAAAM
CATTTCCGCTCAGAATCGTTTTTCGTACACAATGATATATCATTGGATTC
AAATTTAGTTCCATCCATTACAGTAACCCAATTGTAACCTACTGTACAGC
AGAGCGACATCCACTTTCCCGCTTTTTTATTTTATGTTTTTAATTATATT
CACCTGAGTAATTATTTGCTAAAATTCCACAAATTGTTTGACATGWGTCT
AATACTCTAATACCATTTTTATTAAATTTGATGTTATTAGAAGTAACTTC
CTGAAGTCATGATCGCTTTTTTATATTCACTGTGGAAAATATATGTTTAT
TTCATATTGTTAAATTGTCTTCTATAGTTCTATATTATACAATTATTATA
CTGTCTCAGTAGAATATACTAGTTCTGAGAATTTGAAAACCCTTCTACCG
CTCACTGTATATGCTGCTATAAGTAAGATGCACATCCAGGTTGACACCCG
GTATATTTTACTTTTAGACAGAATATAGACTACAGATAGTACAGATTTAT
TGTAGTTATTTAAATATTAATATTTATGTATAATAAAATATATTGTTTTA
TTAATTATTACAGGTATGGTTTAGCAATTGCAACAGGATATATGTGGTAT
GCAAAATATTCACATGCATTAAGATCAATTATCAAATAAAAACTATTAAT
TTATGTATCTCAGTCAAAATAAACATACTAAAAATAATTTTAAGTATTAT
TCATCAGCTATTTGTTCCACAATTATTGTGGAAATATAAATTATTTATAC
TTTACTATGGTCAAATT

Coding sequence (CDS) from alignment at JOTR01000076:362798..367014-

>rna4108 ID=rna4108|Name=XM_015508095.1|organism=Diuraphis noxia|type=CDS|length=879bp|location=Sequence derived from alignment at JOTR01000076:362798..367014- (Diuraphis noxia)
ATGATTTGTAGAAAATATTTTTCAAATTTTTTAGTGAAACAGAATTTTAC
TTCATCTAAACTAATTCTAACTAGTTTGACTAAAAATTCTAGTATGACAG
CCAAATCAGTTGAATTAAATTCATTTAGTAGAAGGAAAAGTARTAATACA
GATATTGGATGGATTTTACTAGTACTACCAATTTCTGCATTTGGACTGGG
TACATGGCAAGTTAAACGAAAAATATGGAAAGAAAATCTGATTCAAGAAC
TCAAAACTAAAACTACACTCCCTGCATTGGACTTTCCGGAAAACGAAGAA
GAACTTACWAAACTTGAATATCGTAGAGTAAAAGTTGTAGGTGAATTTGA
CCATTCAAAAGAATTGTACTTAGGTCCTAGATCCTGTTTAACTGATGGTG
GAGCTGAGAATAGTAACGGATTATTTTCTGGATCTACAAAAAGTGGTTAT
TATGTCATCACACCTTTTAAACTGTCAAATAAACCTTTCTCAATTTTAGT
GAACCGTGGTTGGGTTTCTATGAAAAATAAAAATCCTGCATCTCGAATTT
CTGGCCAAGTTGCAGGTGAAATTGAACTAGAAGGTGTCGTTCGGTTAACT
GAACCAAGACCTCAGTTTGTATCCAAGAATGTAGCAGATTCTCGTTTTTG
GGCATATAGAGATTTAGAGGCAATGTCAAAATTAGTTGATAGTGAACCTA
TTATGATTGATGCTGTAATTGAATGTAGTATTCCTGGAGGTCCAGTTGGC
GGTCAAACAAATATTTCATTGAGAAACGAACATGTCTCTTATATTATTAC
TTGGTATGGTTTAGCAATTGCAACAGGATATATGTGGTATGCAAAATATT
CACATGCATTAAGATCAATTATCAAATAA

Metabolic Data

View metabolic data for rna4108 on AphidCyc