rna4114 (mRNA) Diuraphis noxia

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	XM_015508091.1
Unique Name	rna4114
Type	mRNA
Organism	Diuraphis noxia (Russian wheat aphid)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
JOTR01000076	contig	JOTR01000076:395460..397707 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diuraphis noxia NCBI Gnomon annotation (20160302)	2016-03-02

Properties


Property Name	Value
Gbkey	mRNA
Gene	LOC107161611
Model evidence	Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Product	uncharacterized LOC107161611
Transcript id	XM_015508091.1

Cross References

External references for this mRNA


Database	Accession
GeneID	107161611
Genbank	XM_015508091.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
LOC107161611	gene2809	Diuraphis noxia	gene	JOTR01000076 395460..397707 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
XM_015508091.1	rna4114	Diuraphis noxia	polypeptide	JOTR01000076 395668..397265 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
XP_015363577.1	cds3999	Diuraphis noxia	CDS	JOTR01000076 397187..397265 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
id35860	id35860	Diuraphis noxia	exon	JOTR01000076 395460..395905 -
id35859	id35859	Diuraphis noxia	exon	JOTR01000076 395966..396132 -
id35858	id35858	Diuraphis noxia	exon	JOTR01000076 396194..396335 -
id35857	id35857	Diuraphis noxia	exon	JOTR01000076 396408..396561 -
id35856	id35856	Diuraphis noxia	exon	JOTR01000076 396625..396828 -
id35855	id35855	Diuraphis noxia	exon	JOTR01000076 396916..397110 -
id35854	id35854	Diuraphis noxia	exon	JOTR01000076 397187..397707 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at JOTR01000076:395460..397707-
coding sequence from alignment at JOTR01000076:395460..397707-

spliced messenger RNA

>rna4114 ID=rna4114|Name=XM_015508091.1|organism=Diuraphis noxia|type=mRNA|length=1829bp|location=Sequence derived from alignment at JOTR01000076:395460..397707- (Diuraphis noxia)|Notes=Excludes all bases but those of type(s): exon.  
ATAAATTGCATTGCATGTGTCATGTATGCGTATTAAAGAGATGGTCTTGT
CATGATGAATGTTGTAGAATATTATGCTGAACACTGAACGTAGATAGCGA
GATGAATAATAATAATAATTATTATTGTTATTATATGTAGGATGTAATGT
AACTTAGTTCGTTGTGCCTACGTTTATTATATTTGTTTGTTATATAATTA
AATAATCATAGACAAACTAGATAGTAGATACGAAATGGTCGATGTGTTAT
TTCTGTGACAGCGGTCGGGAAATCTTTTCTAATCAGTTACGATTTCAGTA
ATTCATCAGTTGTAAATAAAATACAAATTCCTTAGGTAGTAATTTTCATA
CACAACTCGAGGATGGAAATATGAATCGTTTATATTCACCGACTATGAGT
GCTCGCCATCCAGATTTCGGGAAATGAAAATGAGCGAAAATTATGAGTTT
GATTCAAAGAAAAATCAAATTGGTAATCGTTTCGATTTTCATTATTGCCG
AGACGCTTTATTCATATGCAGATAGTAATAGTGCAATAGAAAACTGTAAC
AACACTCATTCAGACTGTTTAAAATGTGATACCGATGGACTCTGCAAAAA
ATGTAGGAAAGTGTTAATTGCGACTACAGGTCAGTGTGCTGAAAGTTGTC
CATCAGGGTATGAATATTCATGGTCTACAAATTACCATCAAATGGGCCGT
GTGTGCTCAATATCTGATAAGACTATATTCGKAAATATAAAATTGTCTGG
TCAAGTTGCTGCAATAACTGTTGGTGTTATCATAGGATTTCTAATAGTCT
CAACTATYTTATTGGTTGTAGGAATGGTAGTCAAATTTAAAAAATGTTCA
AATATTAGGTCAAAATCTCGTATGTCACCTAGTTTGGGACCCTTAACTAG
CGGTTCTCATCGTAGTCAAGAAAGTGACGACTGCGACAGATTAGAATTTT
TCAAACAATTAGAAAAGTTACGACCAGATGCACCAGTATTCTTATCGATG
TTAAATGAAACTAGAAAACAAGTCCGAGAACTTCGGGGTCCTAGTCGCCA
ACATTCTGCAATTCAAGCATATCGACCAGTTTTAAAAGATTTATCCAGAA
TTTTAATACTATTAAACAAGGAAGATTGTTTTTTAAACCCTCCTCCTGAC
TGGGAAATTTTATTGGCTTGGGGAGATCGAGTCTTGCGAAGATACAAAAA
ACAACACCCTATAATGATTACTCAAACAAGTTCAAACGAGCATTTTAGTG
ATAAACCAATTAATTTGACTACTTTTACAAATAGTAAAAAACATAGACCA
TTATCAGCATCTTCATCATCACCATCTCGCATTAAACAACTCGCAATCTC
AGTGTTTGATGATAATTATAATGATCACAACAGACATCCAGATGAGAATG
ATGAGGTGATTATGCTACGAGAAAAGACTGTATCAACTTTTGGTCGATCC
ACTAGCCCTGCTTCTCTTAAATTATTAGATACAAATGCATCTAAAAGTAT
GTTGGTGGCTGAATGGAATGCTGAAATGCCACCCTACAATTGTTACTCAA
CTGCAACTGATGAAGATGATTTTTTCACTCTTGGCTTCAGACCACAAGAT
GAAATAACAACAGAACTTTAGCATTTATGTGGCTTGTAGTTTTTACATCA
CTTTTATTAACTTAATTTTTATAACAGTATGGGTTTGTACTGGTTTAGGT
AATAACTACCAAAACTATTATTAAATTTTGTATAGTCTATGTATATTTAT
AAATTTGTTTTTTGTACCAAAAAAGAATATCAAATAATGTACATTTACTT
ATGCCAATAAATTATTTTTTATTTTTTTA

protein sequence of XM_015508091.1

>rna4114 ID=rna4114|Name=XM_015508091.1|organism=Diuraphis noxia|type=polypeptide|length=393bp
MSLIQRKIKLVIVSIFIIAETLYSYADSNSAIENCNNTHSDCLKCDTDGL
CKKCRKVLIATTGQCAESCPSGYEYSWSTNYHQMGRVCSISDKTIFXNIK
LSGQVAAITVGVIIGFLIVSTILLVVGMVVKFKKCSNIRSKSRMSPSLGP
LTSGSHRSQESDDCDRLEFFKQLEKLRPDAPVFLSMLNETRKQVRELRGP
SRQHSAIQAYRPVLKDLSRILILLNKEDCFLNPPPDWEILLAWGDRVLRR
YKKQHPIMITQTSSNEHFSDKPINLTTFTNSKKHRPLSASSSSPSRIKQL
AISVFDDNYNDHNRHPDENDEVIMLREKTVSTFGRSTSPASLKLLDTNAS
KSMLVAEWNAEMPPYNCYSTATDEDDFFTLGFRPQDEITTEL.

mRNA from alignment at JOTR01000076:395460..397707-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4114 ID=rna4114|Name=XM_015508091.1|organism=Diuraphis noxia|type=mRNA|length=2248bp|location=Sequence derived from alignment at JOTR01000076:395460..397707- (Diuraphis noxia)
ATAAATTGCATTGCATGTGTCATGTATGCGTATTAAAGAGATGGTCTTGT
CATGATGAATGTTGTAGAATATTATGCTGAACACTGAACGTAGATAGCGA
GATGAATAATAATAATAATTATTATTGTTATTATATGTAGGATGTAATGT
AACTTAGTTCGTTGTGCCTACGTTTATTATATTTGTTTGTTATATAATTA
AATAATCATAGACAAACTAGATAGTAGATACGAAATGGTCGATGTGTTAT
TTCTGTGACAGCGGTCGGGAAATCTTTTCTAATCAGTTACGATTTCAGTA
ATTCATCAGTTGTAAATAAAATACAAATTCCTTAGGTAGTAATTTTCATA
CACAACTCGAGGATGGAAATATGAATCGTTTATATTCACCGACTATGAGT
GCTCGCCATCCAGATTTCGGGAAATGAAAATGAGCGAAAATTATGAGTTT
GATTCAAAGAAAAATCAAATTGGTAATCGTTTCGATTTTCATTATTGCCG
AGACGCTTTATTCATATGCAGGCAAGTAAATTAAACCACATTGTCTTGCC
ATTACATTTAATACTTAACTGTAGGTGTTTAAATTTCTGTTTTGTAGATA
GTAATAGTGCAATAGAAAACTGTAACAACACTCATTCAGACTGTTTAAAA
TGTGATACCGATGGACTCTGCAAAAAATGTAGGAAAGTGTTAATTGCGAC
TACAGGTCAGTGTGCTGAAAGTTGTCCATCAGGGTATGAATATTCATGGT
CTACAAATTACCATCAAATGGGCCGTGTGTGCTCAATATCTGGTTTGTGT
ATAAATAATTAAATATGTATTATGTACCTACATAATATTTTTTTATAATA
TTGATTTGATTTTAATTGTTTTATATTAGATAAGACTATATTCGKAAATA
TAAAATTGTCTGGTCAAGTTGCTGCAATAACTGTTGGTGTTATCATAGGA
TTTCTAATAGTCTCAACTATYTTATTGGTTGTAGGAATGGTAGTCAAATT
TAAAAAATGTTCAAATATTAGGTCAAAATCTCGTATGTCACCTAGTTTGG
GACCCTTAACTAGCGGTTCTCATCGTAGTCAAGGTATTGTACTTAAATAT
TAGTATTGTTTTTATTTTATTTTTAAGTTATAATGTGGTTTTATAGAAAG
TGACGACTGCGACAGATTAGAATTTTTCAAACAATTAGAAAAGTTACGAC
CAGATGCACCAGTATTCTTATCGATGTTAAATGAAACTAGAAAACAAGTC
CGAGAACTTCGGGGTCCTAGTCGCCAACATTCTGCAATTCAAGCATATCG
GTATGCATATATTCAATTTTGTTTATATAATTTAATTTATATTTAAGTAC
CTACTCAATTATTTCATTTTAGACCAGTTTTAAAAGATTTATCCAGAATT
TTAATACTATTAAACAAGGAAGATTGTTTTTTAAACCCTCCTCCTGACTG
GGAAATTTTATTGGCTTGGGGAGATCGAGTCTTGCGAAGATACAAAAAAC
AACACCCTATAATGGTATAAACTATTGTTGTATAGATATCCTGTGGTAGA
TAATATAAATTTAAAATGTTCACAGATTACTCAAACAAGTTCAAACGAGC
ATTTTAGTGATAAACCAATTAATTTGACTACTTTTACAAATAGTAAAAAA
CATAGACCATTATCAGCATCTTCATCATCACCATCTCGCATTAAACAACT
CGCAATCTCAGTGTTTGATGATAATTATAATGATCACAACAGGTAATACA
ATTACATTATTTTCATTTATTATAATTGAATATTTATTTTAATATTCTGT
AGACATCCAGATGAGAATGATGAGGTGATTATGCTACGAGAAAAGACTGT
ATCAACTTTTGGTCGATCCACTAGCCCTGCTTCTCTTAAATTATTAGATA
CAAATGCATCTAAAAGTATGTTGGTGGCTGAATGGAATGCTGAAATGCCA
CCCTACAATTGTTACTCAACTGCAACTGATGAAGATGATTTTTTCACTCT
TGGCTTCAGACCACAAGATGAAATAACAACAGAACTTTAGCATTTATGTG
GCTTGTAGTTTTTACATCACTTTTATTAACTTAATTTTTATAACAGTATG
GGTTTGTACTGGTTTAGGTAATAACTACCAAAACTATTATTAAATTTTGT
ATAGTCTATGTATATTTATAAATTTGTTTTTTGTACCAAAAAAGAATATC
AAATAATGTACATTTACTTATGCCAATAAATTATTTTTTATTTTTTTA

Coding sequence (CDS) from alignment at JOTR01000076:395460..397707-

>rna4114 ID=rna4114|Name=XM_015508091.1|organism=Diuraphis noxia|type=CDS|length=1179bp|location=Sequence derived from alignment at JOTR01000076:395460..397707- (Diuraphis noxia)
ATGAGTTTGATTCAAAGAAAAATCAAATTGGTAATCGTTTCGATTTTCAT
TATTGCCGAGACGCTTTATTCATATGCAGATAGTAATAGTGCAATAGAAA
ACTGTAACAACACTCATTCAGACTGTTTAAAATGTGATACCGATGGACTC
TGCAAAAAATGTAGGAAAGTGTTAATTGCGACTACAGGTCAGTGTGCTGA
AAGTTGTCCATCAGGGTATGAATATTCATGGTCTACAAATTACCATCAAA
TGGGCCGTGTGTGCTCAATATCTGATAAGACTATATTCGKAAATATAAAA
TTGTCTGGTCAAGTTGCTGCAATAACTGTTGGTGTTATCATAGGATTTCT
AATAGTCTCAACTATYTTATTGGTTGTAGGAATGGTAGTCAAATTTAAAA
AATGTTCAAATATTAGGTCAAAATCTCGTATGTCACCTAGTTTGGGACCC
TTAACTAGCGGTTCTCATCGTAGTCAAGAAAGTGACGACTGCGACAGATT
AGAATTTTTCAAACAATTAGAAAAGTTACGACCAGATGCACCAGTATTCT
TATCGATGTTAAATGAAACTAGAAAACAAGTCCGAGAACTTCGGGGTCCT
AGTCGCCAACATTCTGCAATTCAAGCATATCGACCAGTTTTAAAAGATTT
ATCCAGAATTTTAATACTATTAAACAAGGAAGATTGTTTTTTAAACCCTC
CTCCTGACTGGGAAATTTTATTGGCTTGGGGAGATCGAGTCTTGCGAAGA
TACAAAAAACAACACCCTATAATGATTACTCAAACAAGTTCAAACGAGCA
TTTTAGTGATAAACCAATTAATTTGACTACTTTTACAAATAGTAAAAAAC
ATAGACCATTATCAGCATCTTCATCATCACCATCTCGCATTAAACAACTC
GCAATCTCAGTGTTTGATGATAATTATAATGATCACAACAGACATCCAGA
TGAGAATGATGAGGTGATTATGCTACGAGAAAAGACTGTATCAACTTTTG
GTCGATCCACTAGCCCTGCTTCTCTTAAATTATTAGATACAAATGCATCT
AAAAGTATGTTGGTGGCTGAATGGAATGCTGAAATGCCACCCTACAATTG
TTACTCAACTGCAACTGATGAAGATGATTTTTTCACTCTTGGCTTCAGAC
CACAAGATGAAATAACAACAGAACTTTAG

Metabolic Data

View metabolic data for rna4114 on AphidCyc