OSCA017565-RA (mRNA) Ostrinia scapulalis

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameOSCA017565-RA
Unique NameOSCA017565-RA
TypemRNA
OrganismOstrinia scapulalis (Adzuki bean borer)
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
newscf_25820contignewscf_25820:38..265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly (v1.2) and Annotation (v1.2) of Ostrinia scapulalis2017-06-22
Properties
Property NameValue
eAED0.55
QI0|-1|0|1|-1|1|1|0|75
AED0.42
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
OSCA017565OSCA017565Ostrinia scapulalisgenenewscf_25820 38..265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
OSCA017565-RAOSCA017565-PAOstrinia scapulalispolypeptidenewscf_25820 38..265 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
OSCA017565-RA:exon:3701OSCA017565-RA:exon:3701Ostrinia scapulalisexonnewscf_25820 38..265 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
OSCA017565-RA:cdsOSCA017565-RA:cdsOstrinia scapulalisCDSnewscf_25820 38..265 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>OSCA017565-RA ID=OSCA017565-RA|Name=OSCA017565-RA|organism=Ostrinia scapulalis|type=mRNA|length=228bp
CACATTATCATCGAGGTGGGAGAGATGGGCCGCTACCAGCGATGGCTCTT
CGTCTCCATGATGCCATTCGGCCTGTTTTTCATCTTCGCGTATACGGTAC
AGATGTTCATAGCCGCCACGCCACAGGAGCACTGGTGCAAGGTGCCAGAG
CTACAGCATTTGGACTTGGACTTAAGGTACGAACAGCAACATTGTTGCTG
TAAAATCATCCCTAAGATCAAGCCCTAG
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spliced messenger RNA

>OSCA017565-RA ID=OSCA017565-RA|Name=OSCA017565-RA|organism=Ostrinia scapulalis|type=mRNA|length=228bp|location=Sequence derived from alignment at newscf_25820:38..265+ (Ostrinia scapulalis)|Notes=Excludes all bases but those of type(s): exon.  
CACATTATCATCGAGGTGGGAGAGATGGGCCGCTACCAGCGATGGCTCTT
CGTCTCCATGATGCCATTCGGCCTGTTTTTCATCTTCGCGTATACGGTAC
AGATGTTCATAGCCGCCACGCCACAGGAGCACTGGTGCAAGGTGCCAGAG
CTACAGCATTTGGACTTGGACTTAAGGTACGAACAGCAACATTGTTGCTG
TAAAATCATCCCTAAGATCAAGCCCTAG
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protein sequence of OSCA017565-RA

>OSCA017565-PA ID=OSCA017565-PA|Name=OSCA017565-RA|organism=Ostrinia scapulalis|type=polypeptide|length=75bp
HIIIEVGEMGRYQRWLFVSMMPFGLFFIFAYTVQMFIAATPQEHWCKVPE
LQHLDLDLRYEQQHCCCKIIPKIKP
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mRNA from alignment at newscf_25820:38..265+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>OSCA017565-RA ID=OSCA017565-RA|Name=OSCA017565-RA|organism=Ostrinia scapulalis|type=mRNA|length=228bp|location=Sequence derived from alignment at newscf_25820:38..265+ (Ostrinia scapulalis)
CACATTATCATCGAGGTGGGAGAGATGGGCCGCTACCAGCGATGGCTCTT CGTCTCCATGATGCCATTCGGCCTGTTTTTCATCTTCGCGTATACGGTAC AGATGTTCATAGCCGCCACGCCACAGGAGCACTGGTGCAAGGTGCCAGAG CTACAGCATTTGGACTTGGACTTAAGGTACGAACAGCAACATTGTTGCTG TAAAATCATCCCTAAGATCAAGCCCTAG
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Coding sequence (CDS) from alignment at newscf_25820:38..265+

>OSCA017565-RA ID=OSCA017565-RA|Name=OSCA017565-RA|organism=Ostrinia scapulalis|type=CDS|length=228bp|location=Sequence derived from alignment at newscf_25820:38..265+ (Ostrinia scapulalis)
CACATTATCATCGAGGTGGGAGAGATGGGCCGCTACCAGCGATGGCTCTT
CGTCTCCATGATGCCATTCGGCCTGTTTTTCATCTTCGCGTATACGGTAC
AGATGTTCATAGCCGCCACGCCACAGGAGCACTGGTGCAAGGTGCCAGAG
CTACAGCATTTGGACTTGGACTTAAGGTACGAACAGCAACATTGTTGCTG
TAAAATCATCCCTAAGATCAAGCCCTAG
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Synonyms
The feature 'OSCA017565-RA' has the following synonyms
Synonym
augustus-newscf_25820-processed-gene-0.0-mRNA-1