OSCA021965-RA (mRNA) Ostrinia scapulalis

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameOSCA021965-RA
Unique NameOSCA021965-RA
TypemRNA
OrganismOstrinia scapulalis (Adzuki bean borer)
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
newscf_24835contignewscf_24835:128..514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly (v1.2) and Annotation (v1.2) of Ostrinia scapulalis2017-06-22
Properties
Property NameValue
eAED0.20
QI0|0|0|0.5|0|0|2|0|75
AED0.20
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
OSCA021965OSCA021965Ostrinia scapulalisgenenewscf_24835 128..514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
OSCA021965-RAOSCA021965-PAOstrinia scapulalispolypeptidenewscf_24835 128..514 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
OSCA021965-RA:exon:3158OSCA021965-RA:exon:3158Ostrinia scapulalisexonnewscf_24835 128..163 +
OSCA021965-RA:exon:3159OSCA021965-RA:exon:3159Ostrinia scapulalisexonnewscf_24835 323..514 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
OSCA021965-RA:cdsOSCA021965-RA:cdsOstrinia scapulalisCDSnewscf_24835 323..514 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>OSCA021965-RA ID=OSCA021965-RA|Name=OSCA021965-RA|organism=Ostrinia scapulalis|type=mRNA|length=228bp
ATGAATTTAAAAAATAACGCAGATTTTGCAGACTTGGATTTTGTGCATAC
AAGCGTGAGACGTCCACCCACAAGGTGGACCGACGACCTGATAAAGGTAG
CAGGAAGGCGCTGTATGCAGGCCGCTACCAACCCTGCGATGTGGAAGTCA
TTGGGGGAGGCCTATATTTTCAGCAGTGGACGTCCTGTGGCTGAAATGAT
GATGATGATGAGTCACTACATCAAATAA
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spliced messenger RNA

>OSCA021965-RA ID=OSCA021965-RA|Name=OSCA021965-RA|organism=Ostrinia scapulalis|type=mRNA|length=228bp|location=Sequence derived from alignment at newscf_24835:128..514+ (Ostrinia scapulalis)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTTAAAAAATAACGCAGATTTTGCAGACTTGGATTTTGTGCATAC
AAGCGTGAGACGTCCACCCACAAGGTGGACCGACGACCTGATAAAGGTAG
CAGGAAGGCGCTGTATGCAGGCCGCTACCAACCCTGCGATGTGGAAGTCA
TTGGGGGAGGCCTATATTTTCAGCAGTGGACGTCCTGTGGCTGAAATGAT
GATGATGATGAGTCACTACATCAAATAA
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protein sequence of OSCA021965-RA

>OSCA021965-PA ID=OSCA021965-PA|Name=OSCA021965-RA|organism=Ostrinia scapulalis|type=polypeptide|length=75bp
MNLKNNADFADLDFVHTSVRRPPTRWTDDLIKVAGRRCMQAATNPAMWKS
LGEAYIFSSGRPVAEMMMMMSHYIK
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mRNA from alignment at newscf_24835:128..514+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>OSCA021965-RA ID=OSCA021965-RA|Name=OSCA021965-RA|organism=Ostrinia scapulalis|type=mRNA|length=387bp|location=Sequence derived from alignment at newscf_24835:128..514+ (Ostrinia scapulalis)
ATGAATTTAAAAAATAACGCAGATTTTGCAGACTTGGTATGGATGTATTT GTCCTAATAAATAAATAACGTAATTATTTTTATACTTTTTTTGGAGGCGG CTAAGTTTTTGAAGTCGGTTTTTTCAAACGCAGTTTTTTTAAATTATTTT TAACTTTTTAGTGTCTTTAATAAGTTTTTTTGTAAACTACACTAGGATTT TGTGCATACAAGCGTGAGACGTCCACCCACAAGGTGGACCGACGACCTGA TAAAGGTAGCAGGAAGGCGCTGTATGCAGGCCGCTACCAACCCTGCGATG TGGAAGTCATTGGGGGAGGCCTATATTTTCAGCAGTGGACGTCCTGTGGC TGAAATGATGATGATGATGAGTCACTACATCAAATAA
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Coding sequence (CDS) from alignment at newscf_24835:128..514+

>OSCA021965-RA ID=OSCA021965-RA|Name=OSCA021965-RA|organism=Ostrinia scapulalis|type=CDS|length=228bp|location=Sequence derived from alignment at newscf_24835:128..514+ (Ostrinia scapulalis)
ATGAATTTAAAAAATAACGCAGATTTTGCAGACTTGGATTTTGTGCATAC
AAGCGTGAGACGTCCACCCACAAGGTGGACCGACGACCTGATAAAGGTAG
CAGGAAGGCGCTGTATGCAGGCCGCTACCAACCCTGCGATGTGGAAGTCA
TTGGGGGAGGCCTATATTTTCAGCAGTGGACGTCCTGTGGCTGAAATGAT
GATGATGATGAGTCACTACATCAAATAA
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Synonyms
The feature 'OSCA021965-RA' has the following synonyms
Synonym
maker-newscf_24835-snap-gene-0.0-mRNA-1