OSCA025957-RA (mRNA) Ostrinia scapulalis

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameOSCA025957-RA
Unique NameOSCA025957-RA
TypemRNA
OrganismOstrinia scapulalis (Adzuki bean borer)
Sequence length135
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
newscf_43776contignewscf_43776:472..606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly (v1.2) and Annotation (v1.2) of Ostrinia scapulalis2017-06-22
Properties
Property NameValue
eAED0.10
QI0|-1|0|1|-1|1|1|0|44
AED0.10
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
OSCA025957OSCA025957Ostrinia scapulalisgenenewscf_43776 472..606 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
OSCA025957-RAOSCA025957-PAOstrinia scapulalispolypeptidenewscf_43776 472..606 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
OSCA025957-RA:exon:2450OSCA025957-RA:exon:2450Ostrinia scapulalisexonnewscf_43776 472..606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
OSCA025957-RA:cdsOSCA025957-RA:cdsOstrinia scapulalisCDSnewscf_43776 472..606 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>OSCA025957-RA ID=OSCA025957-RA|Name=OSCA025957-RA|organism=Ostrinia scapulalis|type=mRNA|length=135bp
CAAACTTGGCGCCGCACTGTAGCGGACGAGGCGAAGAAGATCGGCAAGAC
CTGGAGCGAGATCAAGCGAGAAGCTCAAGACCGAATGAGATGGAGGACTG
TTGTGGACGCCCTCTGCCCCATCTANGGGACATAG
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spliced messenger RNA

>OSCA025957-RA ID=OSCA025957-RA|Name=OSCA025957-RA|organism=Ostrinia scapulalis|type=mRNA|length=135bp|location=Sequence derived from alignment at newscf_43776:472..606+ (Ostrinia scapulalis)|Notes=Excludes all bases but those of type(s): exon.  
CAAACTTGGCGCCGCACTGTAGCGGACGAGGCGAAGAAGATCGGCAAGAC
CTGGAGCGAGATCAAGCGAGAAGCTCAAGACCGAATGAGATGGAGGACTG
TTGTGGACGCCCTCTGCCCCATCTARGGGACATAG
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protein sequence of OSCA025957-RA

>OSCA025957-PA ID=OSCA025957-PA|Name=OSCA025957-RA|organism=Ostrinia scapulalis|type=polypeptide|length=44bp
QTWRRTVADEAKKIGKTWSEIKREAQDRMRWRTVVDALCPIXGT
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mRNA from alignment at newscf_43776:472..606+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>OSCA025957-RA ID=OSCA025957-RA|Name=OSCA025957-RA|organism=Ostrinia scapulalis|type=mRNA|length=135bp|location=Sequence derived from alignment at newscf_43776:472..606+ (Ostrinia scapulalis)
CAAACTTGGCGCCGCACTGTAGCGGACGAGGCGAAGAAGATCGGCAAGAC CTGGAGCGAGATCAAGCGAGAAGCTCAAGACCGAATGAGATGGAGGACTG TTGTGGACGCCCTCTGCCCCATCTARGGGACATAG
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Coding sequence (CDS) from alignment at newscf_43776:472..606+

>OSCA025957-RA ID=OSCA025957-RA|Name=OSCA025957-RA|organism=Ostrinia scapulalis|type=CDS|length=135bp|location=Sequence derived from alignment at newscf_43776:472..606+ (Ostrinia scapulalis)
CAAACTTGGCGCCGCACTGTAGCGGACGAGGCGAAGAAGATCGGCAAGAC
CTGGAGCGAGATCAAGCGAGAAGCTCAAGACCGAATGAGATGGAGGACTG
TTGTGGACGCCCTCTGCCCCATCTARGGGACATAG
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Synonyms
The feature 'OSCA025957-RA' has the following synonyms
Synonym
augustus-newscf_43776-processed-gene-0.0-mRNA-1