OSCA025964-RA (mRNA) Ostrinia scapulalis

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameOSCA025964-RA
Unique NameOSCA025964-RA
TypemRNA
OrganismOstrinia scapulalis (Adzuki bean borer)
Sequence length204
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
newscf_37235contignewscf_37235:843..1046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly (v1.2) and Annotation (v1.2) of Ostrinia scapulalis2017-06-22
Properties
Property NameValue
eAED0.23
QI0|-1|0|1|-1|1|1|0|67
AED0.23
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
OSCA025964OSCA025964Ostrinia scapulalisgenenewscf_37235 843..1046 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
OSCA025964-RAOSCA025964-PAOstrinia scapulalispolypeptidenewscf_37235 843..1046 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
OSCA025964-RA:exon:3600OSCA025964-RA:exon:3600Ostrinia scapulalisexonnewscf_37235 843..1046 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
OSCA025964-RA:cdsOSCA025964-RA:cdsOstrinia scapulalisCDSnewscf_37235 843..1046 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>OSCA025964-RA ID=OSCA025964-RA|Name=OSCA025964-RA|organism=Ostrinia scapulalis|type=mRNA|length=204bp
GCTGATGGCCGCTGGGGCCAGAAAGTTCTTGAGTGGCGACCACGAGCCGG
AAGCCGTAGCGTGGGCAGGCCTCCCACCAGATGGACCGACGATCTGGTGA
AGGTCGCGGGAGGTGCCTGGATACGAGCGGCGCAAGATCGGTCTTCGAGG
AAATCCTTGGGGGAGGCCTTTGTCCAGCAGTGGACGTCTTACGGTTTCAG
CTGA
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spliced messenger RNA

>OSCA025964-RA ID=OSCA025964-RA|Name=OSCA025964-RA|organism=Ostrinia scapulalis|type=mRNA|length=204bp|location=Sequence derived from alignment at newscf_37235:843..1046+ (Ostrinia scapulalis)|Notes=Excludes all bases but those of type(s): exon.  
GCTGATGGCCGCTGGGGCCAGAAAGTTCTTGAGTGGCGACCACGAGCCGG
AAGCCGTAGCGTGGGCAGGCCTCCCACCAGATGGACCGACGATCTGGTGA
AGGTCGCGGGAGGTGCCTGGATACGAGCGGCGCAAGATCGGTCTTCGAGG
AAATCCTTGGGGGAGGCCTTTGTCCAGCAGTGGACGTCTTACGGTTTCAG
CTGA
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protein sequence of OSCA025964-RA

>OSCA025964-PA ID=OSCA025964-PA|Name=OSCA025964-RA|organism=Ostrinia scapulalis|type=polypeptide|length=67bp
ADGRWGQKVLEWRPRAGSRSVGRPPTRWTDDLVKVAGGAWIRAAQDRSSR
KSLGEAFVQQWTSYGFS
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mRNA from alignment at newscf_37235:843..1046+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>OSCA025964-RA ID=OSCA025964-RA|Name=OSCA025964-RA|organism=Ostrinia scapulalis|type=mRNA|length=204bp|location=Sequence derived from alignment at newscf_37235:843..1046+ (Ostrinia scapulalis)
GCTGATGGCCGCTGGGGCCAGAAAGTTCTTGAGTGGCGACCACGAGCCGG AAGCCGTAGCGTGGGCAGGCCTCCCACCAGATGGACCGACGATCTGGTGA AGGTCGCGGGAGGTGCCTGGATACGAGCGGCGCAAGATCGGTCTTCGAGG AAATCCTTGGGGGAGGCCTTTGTCCAGCAGTGGACGTCTTACGGTTTCAG CTGA
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Coding sequence (CDS) from alignment at newscf_37235:843..1046+

>OSCA025964-RA ID=OSCA025964-RA|Name=OSCA025964-RA|organism=Ostrinia scapulalis|type=CDS|length=204bp|location=Sequence derived from alignment at newscf_37235:843..1046+ (Ostrinia scapulalis)
GCTGATGGCCGCTGGGGCCAGAAAGTTCTTGAGTGGCGACCACGAGCCGG
AAGCCGTAGCGTGGGCAGGCCTCCCACCAGATGGACCGACGATCTGGTGA
AGGTCGCGGGAGGTGCCTGGATACGAGCGGCGCAAGATCGGTCTTCGAGG
AAATCCTTGGGGGAGGCCTTTGTCCAGCAGTGGACGTCTTACGGTTTCAG
CTGA
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Synonyms
The feature 'OSCA025964-RA' has the following synonyms
Synonym
augustus-newscf_37235-processed-gene-0.0-mRNA-1