OSCA026099-RA (mRNA) Ostrinia scapulalis

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameOSCA026099-RA
Unique NameOSCA026099-RA
TypemRNA
OrganismOstrinia scapulalis (Adzuki bean borer)
Sequence length441
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
newscf_48567contignewscf_48567:466..906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly (v1.2) and Annotation (v1.2) of Ostrinia scapulalis2017-06-22
Properties
Property NameValue
eAED0.22
QI0|-1|0|1|-1|1|1|0|146
AED0.06
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
OSCA026099OSCA026099Ostrinia scapulalisgenenewscf_48567 466..906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
OSCA026099-RAOSCA026099-PAOstrinia scapulalispolypeptidenewscf_48567 466..906 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
OSCA026099-RA:exon:2584OSCA026099-RA:exon:2584Ostrinia scapulalisexonnewscf_48567 466..906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
OSCA026099-RA:cdsOSCA026099-RA:cdsOstrinia scapulalisCDSnewscf_48567 466..906 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>OSCA026099-RA ID=OSCA026099-RA|Name=OSCA026099-RA|organism=Ostrinia scapulalis|type=mRNA|length=441bp
CGACATGGCCCGACTTTAGTTCGTTTACGGATCTCCTCATTTCTGATTCG
ATCTCGTAAAGAAACACCGAGCATAGCCCGACATAACCCCAAAAACATAA
CTGACATAGCCCGTCGGATTAGCAAGCTGAAGTGGCAATGGGCAGGGCAC
ATAGTACGCAGAACTGACGGCCGATGGGGCAGCAAGATTCTGGAGTGGAG
GACGCGGCCGGGAAACGCAGCGTGGGACGTCCACCCGCAAGGTGAACCGA
CGACATTAAAAAAGGAAGGCGCTGGACGCAGGCCACAACCAACCGGGCAG
CATGGAAAGCATTGGGGAAGGCCTATGTTCAGCAGTGGACGTCCTGTGGC
TGAGATGATGATGATGATGACATGGCCCGTGGACCAAGCTAAAAGTGGGC
CAAGTCACTGGAAGACTGTCTATTCCATGTATCTTACCTAA
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spliced messenger RNA

>OSCA026099-RA ID=OSCA026099-RA|Name=OSCA026099-RA|organism=Ostrinia scapulalis|type=mRNA|length=441bp|location=Sequence derived from alignment at newscf_48567:466..906+ (Ostrinia scapulalis)|Notes=Excludes all bases but those of type(s): exon.  
CGACATGGCCCGACTTTAGTTCGTTTACGGATCTCCTCATTTCTGATTCG
ATCTCGTAAAGAAACACCGAGCATAGCCCGACATAACCCCAAAAACATAA
CTGACATAGCCCGTCGGATTAGCAAGCTGAAGTGGCAATGGGCAGGGCAC
ATAGTACGCAGAACTGACGGCCGATGGGGCAGCAAGATTCTGGAGTGGAG
GACGCGGCCGGGAAACGCAGCGTGGGACGTCCACCCGCAAGGTGAACCGA
CGACATTAAAAAAGGAAGGCGCTGGACGCAGGCCACAACCAACCGGGCAG
CATGGAAAGCATTGGGGAAGGCCTATGTTCAGCAGTGGACGTCCTGTGGC
TGAGATGATGATGATGATGACATGGCCCGTGGACCAAGCTAAAAGTGGGC
CAAGTCACTGGAAGACTGTCTATTCCATGTATCTTACCTAA
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protein sequence of OSCA026099-RA

>OSCA026099-PA ID=OSCA026099-PA|Name=OSCA026099-RA|organism=Ostrinia scapulalis|type=polypeptide|length=146bp
RHGPTLVRLRISSFLIRSRKETPSIARHNPKNITDIARRISKLKWQWAGH
IVRRTDGRWGSKILEWRTRPGNAAWDVHPQGEPTTLKKEGAGRRPQPTGQ
HGKHWGRPMFSSGRPVAEMMMMMTWPVDQAKSGPSHWKTVYSMYLT
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mRNA from alignment at newscf_48567:466..906+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>OSCA026099-RA ID=OSCA026099-RA|Name=OSCA026099-RA|organism=Ostrinia scapulalis|type=mRNA|length=441bp|location=Sequence derived from alignment at newscf_48567:466..906+ (Ostrinia scapulalis)
CGACATGGCCCGACTTTAGTTCGTTTACGGATCTCCTCATTTCTGATTCG ATCTCGTAAAGAAACACCGAGCATAGCCCGACATAACCCCAAAAACATAA CTGACATAGCCCGTCGGATTAGCAAGCTGAAGTGGCAATGGGCAGGGCAC ATAGTACGCAGAACTGACGGCCGATGGGGCAGCAAGATTCTGGAGTGGAG GACGCGGCCGGGAAACGCAGCGTGGGACGTCCACCCGCAAGGTGAACCGA CGACATTAAAAAAGGAAGGCGCTGGACGCAGGCCACAACCAACCGGGCAG CATGGAAAGCATTGGGGAAGGCCTATGTTCAGCAGTGGACGTCCTGTGGC TGAGATGATGATGATGATGACATGGCCCGTGGACCAAGCTAAAAGTGGGC CAAGTCACTGGAAGACTGTCTATTCCATGTATCTTACCTAA
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Coding sequence (CDS) from alignment at newscf_48567:466..906+

>OSCA026099-RA ID=OSCA026099-RA|Name=OSCA026099-RA|organism=Ostrinia scapulalis|type=CDS|length=441bp|location=Sequence derived from alignment at newscf_48567:466..906+ (Ostrinia scapulalis)
CGACATGGCCCGACTTTAGTTCGTTTACGGATCTCCTCATTTCTGATTCG
ATCTCGTAAAGAAACACCGAGCATAGCCCGACATAACCCCAAAAACATAA
CTGACATAGCCCGTCGGATTAGCAAGCTGAAGTGGCAATGGGCAGGGCAC
ATAGTACGCAGAACTGACGGCCGATGGGGCAGCAAGATTCTGGAGTGGAG
GACGCGGCCGGGAAACGCAGCGTGGGACGTCCACCCGCAAGGTGAACCGA
CGACATTAAAAAAGGAAGGCGCTGGACGCAGGCCACAACCAACCGGGCAG
CATGGAAAGCATTGGGGAAGGCCTATGTTCAGCAGTGGACGTCCTGTGGC
TGAGATGATGATGATGATGACATGGCCCGTGGACCAAGCTAAAAGTGGGC
CAAGTCACTGGAAGACTGTCTATTCCATGTATCTTACCTAA
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Synonyms
The feature 'OSCA026099-RA' has the following synonyms
Synonym
augustus-newscf_48567-processed-gene-0.0-mRNA-1