OSCA026108-RA (mRNA) Ostrinia scapulalis

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameOSCA026108-RA
Unique NameOSCA026108-RA
TypemRNA
OrganismOstrinia scapulalis (Adzuki bean borer)
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
newscf_42566contignewscf_42566:337..564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly (v1.2) and Annotation (v1.2) of Ostrinia scapulalis2017-06-22
Properties
Property NameValue
eAED0.52
QI0|-1|0|1|-1|1|1|0|76
AED0.24
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
OSCA026108OSCA026108Ostrinia scapulalisgenenewscf_42566 337..564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
OSCA026108-RAOSCA026108-PAOstrinia scapulalispolypeptidenewscf_42566 337..564 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
OSCA026108-RA:exon:3967OSCA026108-RA:exon:3967Ostrinia scapulalisexonnewscf_42566 337..564 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
OSCA026108-RA:cdsOSCA026108-RA:cdsOstrinia scapulalisCDSnewscf_42566 337..564 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>OSCA026108-RA ID=OSCA026108-RA|Name=OSCA026108-RA|organism=Ostrinia scapulalis|type=mRNA|length=228bp
ATGGGGCAGCAAGGTTCTGGAATGGAGGCCGCGTACCGGAAAACGCAGCG
TGTGACGTCCACCCACAAGTTGGACCAAAGACATCGTGAAGACGCTGGAC
ACAGGTCGCTACCAACCGGGCAACATGAAAAGCATTGGGGGAGGCCTATG
TTCAGCAGTGGACGTCCTATGGCTGAGATGATGATGATGATGATGATGAA
TAAAGTGTATCTTTTTATGCATAACAAA
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spliced messenger RNA

>OSCA026108-RA ID=OSCA026108-RA|Name=OSCA026108-RA|organism=Ostrinia scapulalis|type=mRNA|length=228bp|location=Sequence derived from alignment at newscf_42566:337..564+ (Ostrinia scapulalis)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCAGCAAGGTTCTGGAATGGAGGCCGCGTACCGGAAAACGCAGCG
TGTGACGTCCACCCACAAGTTGGACCAAAGACATCGTGAAGACGCTGGAC
ACAGGTCGCTACCAACCGGGCAACATGAAAAGCATTGGGGGAGGCCTATG
TTCAGCAGTGGACGTCCTATGGCTGAGATGATGATGATGATGATGATGAA
TAAAGTGTATCTTTTTATGCATAACAAA
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protein sequence of OSCA026108-RA

>OSCA026108-PA ID=OSCA026108-PA|Name=OSCA026108-RA|organism=Ostrinia scapulalis|type=polypeptide|length=76bp
MGQQGSGMEAAYRKTQRVTSTHKLDQRHREDAGHRSLPTGQHEKHWGRPM
FSSGRPMAEMMMMMMMNKVYLFMHNK
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mRNA from alignment at newscf_42566:337..564+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>OSCA026108-RA ID=OSCA026108-RA|Name=OSCA026108-RA|organism=Ostrinia scapulalis|type=mRNA|length=228bp|location=Sequence derived from alignment at newscf_42566:337..564+ (Ostrinia scapulalis)
ATGGGGCAGCAAGGTTCTGGAATGGAGGCCGCGTACCGGAAAACGCAGCG TGTGACGTCCACCCACAAGTTGGACCAAAGACATCGTGAAGACGCTGGAC ACAGGTCGCTACCAACCGGGCAACATGAAAAGCATTGGGGGAGGCCTATG TTCAGCAGTGGACGTCCTATGGCTGAGATGATGATGATGATGATGATGAA TAAAGTGTATCTTTTTATGCATAACAAA
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Coding sequence (CDS) from alignment at newscf_42566:337..564+

>OSCA026108-RA ID=OSCA026108-RA|Name=OSCA026108-RA|organism=Ostrinia scapulalis|type=CDS|length=228bp|location=Sequence derived from alignment at newscf_42566:337..564+ (Ostrinia scapulalis)
ATGGGGCAGCAAGGTTCTGGAATGGAGGCCGCGTACCGGAAAACGCAGCG
TGTGACGTCCACCCACAAGTTGGACCAAAGACATCGTGAAGACGCTGGAC
ACAGGTCGCTACCAACCGGGCAACATGAAAAGCATTGGGGGAGGCCTATG
TTCAGCAGTGGACGTCCTATGGCTGAGATGATGATGATGATGATGATGAA
TAAAGTGTATCTTTTTATGCATAACAAA
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Synonyms
The feature 'OSCA026108-RA' has the following synonyms
Synonym
snap-newscf_42566-processed-gene-0.1-mRNA-1