g8244.t1 (mRNA) Thaumetopoea pityocampa

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Nameg8244.t1
Unique Nameg8244.t1
TypemRNA
OrganismThaumetopoea pityocampa (Pine processionary)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scf185131contigscf185131:544..1075 +
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
g8244g8244Thaumetopoea pityocampagenescf185131 544..1075 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
g8244.t1g8244.t1_pThaumetopoea pityocampapolypeptidescf185131 544..1072 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
g8244.t1-exon-1g8244.t1-exon-1Thaumetopoea pityocampaexonscf185131 544..605 +
g8244.t1-exon-2g8244.t1-exon-2Thaumetopoea pityocampaexonscf185131 729..880 +
g8244.t1-exon-3g8244.t1-exon-3Thaumetopoea pityocampaexonscf185131 951..1072 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
g8244.t1-cds-1g8244.t1-cds-1Thaumetopoea pityocampaCDSscf185131 544..605 +
g8244.t1-cds-2g8244.t1-cds-2Thaumetopoea pityocampaCDSscf185131 729..880 +
g8244.t1-cds-3g8244.t1-cds-3Thaumetopoea pityocampaCDSscf185131 951..1072 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>g8244.t1 ID=g8244.t1|Name=g8244.t1|organism=Thaumetopoea pityocampa|type=mRNA|length=336bp|location=Sequence derived from alignment at scf185131:544..1075+ (Thaumetopoea pityocampa)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTGGAAACTAACTAAAGGATGCATCATCCGGTCAAAATCTACTCC
GATCTCCAGGACATTTCGAATTCGCCCAAAATGCTTGATAGGTGTATCTA
ATTGCGATCTTCGTGTCACAGTGTTGGGAAACGCTGTGTCCATGCCTGTT
GGAATATCACCTACTGCCATGCAACGAATGGCACATCCTGACGGTGAAGT
AGCTAATGCGAAAGCTGCCGAGGCGGAGGGTACTATTTTCACACTGAGTA
CAATAGCGACAAGTTCCATAGAAGAAGTTTCCGACGCTGCACCCAATGGA
ATTAAATGGTTCCAGTTATATATCTACAATGATCGG
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mRNA from alignment at scf185131:544..1075+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>g8244.t1 ID=g8244.t1|Name=g8244.t1|organism=Thaumetopoea pityocampa|type=mRNA|length=532bp|location=Sequence derived from alignment at scf185131:544..1075+ (Thaumetopoea pityocampa)
ATGCAGTGGAAACTAACTAAAGGATGCATCATCCGGTCAAAATCTACTCC
GATCTCCAGGACGTGTGCCAAGCGTGCAGATTATGGCACATCTTTTATGC
AGGAGGCCCGTGTCCGGCGGTGCACTGCGCACTGGTGACGACGATAGTGC
TGCTTAGAGTATGAACACTAATCATTTCGTTACAGATTTCGAATTCGCCC
AAAATGCTTGATAGGTGTATCTAATTGCGATCTTCGTGTCACAGTGTTGG
GAAACGCTGTGTCCATGCCTGTTGGAATATCACCTACTGCCATGCAACGA
ATGGCACATCCTGACGGTGAAGTAGCTAATGCGAAAGGTATCTTTGTAAT
AATATGGATTTATTCACATAATCTTATGGGAAGTTATTTTTAAAATTTAT
AATGTAGCTGCCGAGGCGGAGGGTACTATTTTCACACTGAGTACAATAGC
GACAAGTTCCATAGAAGAAGTTTCCGACGCTGCACCCAATGGAATTAAAT
GGTTCCAGTTATATATCTACAATGATCGGTGA
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Coding sequence (CDS) from alignment at scf185131:544..1075+

>g8244.t1 ID=g8244.t1|Name=g8244.t1|organism=Thaumetopoea pityocampa|type=CDS|length=336bp|location=Sequence derived from alignment at scf185131:544..1075+ (Thaumetopoea pityocampa)
ATGCAGTGGAAACTAACTAAAGGATGCATCATCCGGTCAAAATCTACTCC
GATCTCCAGGACATTTCGAATTCGCCCAAAATGCTTGATAGGTGTATCTA
ATTGCGATCTTCGTGTCACAGTGTTGGGAAACGCTGTGTCCATGCCTGTT
GGAATATCACCTACTGCCATGCAACGAATGGCACATCCTGACGGTGAAGT
AGCTAATGCGAAAGCTGCCGAGGCGGAGGGTACTATTTTCACACTGAGTA
CAATAGCGACAAGTTCCATAGAAGAAGTTTCCGACGCTGCACCCAATGGA
ATTAAATGGTTCCAGTTATATATCTACAATGATCGG
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