g8525.t1 (mRNA) Thaumetopoea pityocampa

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Nameg8525.t1
Unique Nameg8525.t1
TypemRNA
OrganismThaumetopoea pityocampa (Pine processionary)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scf192709contigscf192709:247..1110 +
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
g8525g8525Thaumetopoea pityocampagenescf192709 247..1110 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
g8525.t1-exon-1g8525.t1-exon-1Thaumetopoea pityocampaexonscf192709 247..342 +
g8525.t1-exon-2g8525.t1-exon-2Thaumetopoea pityocampaexonscf192709 931..1107 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
g8525.t1-cds-1g8525.t1-cds-1Thaumetopoea pityocampaCDSscf192709 247..342 +
g8525.t1-cds-2g8525.t1-cds-2Thaumetopoea pityocampaCDSscf192709 931..1107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
g8525.t1g8525.t1_pThaumetopoea pityocampapolypeptidescf192709 247..1107 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>g8525.t1 ID=g8525.t1|Name=g8525.t1|organism=Thaumetopoea pityocampa|type=mRNA|length=273bp|location=Sequence derived from alignment at scf192709:247..1110+ (Thaumetopoea pityocampa)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGGTGCTGGGAGCAGAAGCCGACGGCGCGGCCGTCCTTCGGTCA
GCTGCAGGAGATCCTGGGCGGCTTCCTCGAGGACAATGTGCGCAATCACT
ACGTAGACCTGAATTCTGCGTACACGCACATGAACGTGAAAACGGACGGG
CAGGAGGACTATCTGGCGATGGTGTGCGCGCCCGACTACAACAACCTGGT
GACCCCCAGCCCCCACCACTACGCCAACGAGTCCAGCTTCTTCCCGCACA
CGCCGTCGCAAGTTGGTGAGTGT
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mRNA from alignment at scf192709:247..1110+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>g8525.t1 ID=g8525.t1|Name=g8525.t1|organism=Thaumetopoea pityocampa|type=mRNA|length=864bp|location=Sequence derived from alignment at scf192709:247..1110+ (Thaumetopoea pityocampa)
ATGCTGCGGTGCTGGGAGCAGAAGCCGACGGCGCGGCCGTCCTTCGGTCA
GCTGCAGGAGATCCTGGGCGGCTTCCTCGAGGACAATGTGCGCAATGTGA
GTGCGGCGGCCGCGCTGGGTACCGTGGCCTCTAACACTAGTTATTTACTT
TACGTGTTGTTATTTAAGTGCATTGTCGGTGTAGTGGCGTTAGACGCGGC
TTACCATCAAAGGGTCGCAGGACACCAATGTACTCAACGGAGAAGGAAAA
CTTCGTGAGGAAACCTGCATGACACTATGGGTGTGTGAAGTCTACCAACC
CGCACCAGACCAACGTGGTAGAATATGACCTAATTCCCCTCCTTATAAGG
GGAGGTCCGTGTCCCTGTAGCCCACTACAGGGATATATGTGGACTGTGAA
TGATGATTTTTTAAATATATTTAAGCTAATATTTGATTATAATTCCACTA
AAAGTACTAAAAGGTACTATCCTATAAGGCTGTAATAGTTTGTTCAAAAT
CTTGCATCAAAAATGATTTTTGCGTGAAGCTCGAGCAAACAAACAAACAA
ACATCGACAGATTTGATTTCATAAGCCCTTAATTAGTCGATGTGAGTAGT
TTTTTTAATATCTTTAATTTACAAAATTTGACATTTAATAATTTTATAAT
AATAATATACACATATTGTACTAATTGTTTACAGCACTACGTAGACCTGA
ATTCTGCGTACACGCACATGAACGTGAAAACGGACGGGCAGGAGGACTAT
CTGGCGATGGTGTGCGCGCCCGACTACAACAACCTGGTGACCCCCAGCCC
CCACCACTACGCCAACGAGTCCAGCTTCTTCCCGCACACGCCGTCGCAAG
TTGGTGAGTGTTAA
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Coding sequence (CDS) from alignment at scf192709:247..1110+

>g8525.t1 ID=g8525.t1|Name=g8525.t1|organism=Thaumetopoea pityocampa|type=CDS|length=273bp|location=Sequence derived from alignment at scf192709:247..1110+ (Thaumetopoea pityocampa)
ATGCTGCGGTGCTGGGAGCAGAAGCCGACGGCGCGGCCGTCCTTCGGTCA
GCTGCAGGAGATCCTGGGCGGCTTCCTCGAGGACAATGTGCGCAATCACT
ACGTAGACCTGAATTCTGCGTACACGCACATGAACGTGAAAACGGACGGG
CAGGAGGACTATCTGGCGATGGTGTGCGCGCCCGACTACAACAACCTGGT
GACCCCCAGCCCCCACCACTACGCCAACGAGTCCAGCTTCTTCCCGCACA
CGCCGTCGCAAGTTGGTGAGTGT
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