g915.t2 (mRNA) Thaumetopoea pityocampa

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	g915.t2
Unique Name	g915.t2
Type	mRNA
Organism	Thaumetopoea pityocampa (Pine processionary)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scf19688	contig	scf19688:1774..3301 +

Relationships

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
g915.t2-exon-1	g915.t2-exon-1	Thaumetopoea pityocampa	exon	scf19688 1774..2302 +
g915.t2-exon-2	g915.t2-exon-2	Thaumetopoea pityocampa	exon	scf19688 3243..3298 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
g915.t2-cds-1	g915.t2-cds-1	Thaumetopoea pityocampa	CDS	scf19688 1774..2302 +
g915.t2-cds-2	g915.t2-cds-2	Thaumetopoea pityocampa	CDS	scf19688 3243..3298 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
g915.t2	g915.t2	Thaumetopoea pityocampa	polypeptide	scf19688 1774..3298 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
mRNA from alignment at scf19688:1774..3301+
coding sequence from alignment at scf19688:1774..3301+

spliced messenger RNA

>g915.t2 ID=g915.t2|Name=g915.t2|organism=Thaumetopoea pityocampa|type=mRNA|length=585bp|location=Sequence derived from alignment at scf19688:1774..3301+ (Thaumetopoea pityocampa)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAAAAAATGACGATCAACCCAAAGAGAAAGAGAATGAGGGTTCCGT
CAACGATTGGATCTCGGGAGGACCTCTCGGCTCCAAAGGGGCCGTTCTCA
TGTTCAGATCATGCGTCTTAGCATCGAGAACACCTTCGATGGAGTCTACG
ACCAAAACCATAGGTAACAATACTGGTACGACGATGCTATTGAATAAGGC
GAAAAATATGGCTAGAAGACTAGTTGCCGAACCACATTCCTTTTCAATGA
GACCAAAGAATATAATGCATGATGTCATGGAGACGTTTGGGAACAGCAAT
AAGTTTAACGGGACTGCGTACGTCGTTCGGCACGTTAGTGAAGTAGATGT
CCCGGAGGCTGTCGTTATGGAGGAGCAAGGACACGAGGTGATAGAGCATA
AGAGGGACATTGAGGATGTCCTGAATGATTTAAGCAAGATCACGTTGAAG
AAACACTTGAATATTGAAAACACGACTGCTAACATTAAATCTGCTGACGA
TCCACCGGCTGCACCGTCGTTCACTAAAGATGATAAGAAAAATAAGAAAG
CCAAAGGGAAGCATAAGAGGANNNNNNNNNNGATC

mRNA from alignment at scf19688:1774..3301+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>g915.t2 ID=g915.t2|Name=g915.t2|organism=Thaumetopoea pityocampa|type=mRNA|length=1528bp|location=Sequence derived from alignment at scf19688:1774..3301+ (Thaumetopoea pityocampa)
ATGAGAAAAAATGACGATCAACCCAAAGAGAAAGAGAATGAGGGTTCCGT
CAACGATTGGATCTCGGGAGGACCTCTCGGCTCCAAAGGGGCCGTTCTCA
TGTTCAGATCATGCGTCTTAGCATCGAGAACACCTTCGATGGAGTCTACG
ACCAAAACCATAGGTAACAATACTGGTACGACGATGCTATTGAATAAGGC
GAAAAATATGGCTAGAAGACTAGTTGCCGAACCACATTCCTTTTCAATGA
GACCAAAGAATATAATGCATGATGTCATGGAGACGTTTGGGAACAGCAAT
AAGTTTAACGGGACTGCGTACGTCGTTCGGCACGTTAGTGAAGTAGATGT
CCCGGAGGCTGTCGTTATGGAGGAGCAAGGACACGAGGTGATAGAGCATA
AGAGGGACATTGAGGATGTCCTGAATGATTTAAGCAAGATCACGTTGAAG
AAACACTTGAATATTGAAAACACGACTGCTAACATTAAATCTGCTGACGA
TCCACCGGCTGCACCGTCGTTCACTAAAGGTAGGTCAATAGATATCTATT
TGAGTACCTCCTAAAAAACTTTAACATCTATCTTAATGAGTGGTAGCGAT
AGGTGGTAGAGGTGGTGGTAGTGGGTTCGACGACTGATTGGTTCAATGTT
AGTAACTATGTTTCTGGGCCAATTGGTCGAGTAGCCCGAGGGTGATTGCG
TGGTCGCGGTCGCTCAAGAGTCTTATGCAGTCTGATGGGCTGGCTTTTTA
TATCATTCAGATGAAAAAATTTGCTTTAATATATCAGGTTTAGTTTTTAA
ATATAAATGAGACTGTTGGTATGATTTTTTAATGATATCCTTTATTACCA
GGTCTCATTCACAGGCACATCGCGCCACAGTCGATTTCATTTGTGACAGA
AACAATAATCATACAATTACGGTGCAGGCTACGAGGCGCAAGCAAGCCTT
GTTGTCTGCGTTTTTGTTTTGTTTTTGTCAAACCGGATATTTTTACATAA
TTTGTGGTCAGCGGGGCACATGGCTTAAAAACGGGGCTATCCTGTTCAAA
GAGGGACGTATGATCACTTATAATAGCGCACAACTATGTTCTCGGCGCGA
CTCGGATGTTCGCGCGCTGTTTCGATCTATGAACGTTTACTCACGTATTA
TGATCCTATCGGGCGAGAAAGAAGTGAGAGAGTCTAAAACAGTCAAAGAA
AAAAACTCTAACACGTAGAGATACGACTCATATTAGCCTACACGCACTGG
GCAAGGTGCCTTGTAGATTAATAAAAATATTAAACACACAGCGTTGTACG
AACTAAAATGCGCTTTATTGCGTCATCGCGAGAGTCGCTATTTAACTAAA
TATCCTCACGAAGTACATCTCTCTATGTCTCTCTTCTGTGACTATAGACC
CATAAAACACTACACGCTTTTCTTTTCGATCTAATGTCTATTAACCCAAC
GTATCGCTAATTCTAACAGATGATAAGAAAAATAAGAAAGCCAAAGGGAA
GCATAAGAGGANNNNNNNNNNGATCTAA

Coding sequence (CDS) from alignment at scf19688:1774..3301+

>g915.t2 ID=g915.t2|Name=g915.t2|organism=Thaumetopoea pityocampa|type=CDS|length=585bp|location=Sequence derived from alignment at scf19688:1774..3301+ (Thaumetopoea pityocampa)
ATGAGAAAAAATGACGATCAACCCAAAGAGAAAGAGAATGAGGGTTCCGT
CAACGATTGGATCTCGGGAGGACCTCTCGGCTCCAAAGGGGCCGTTCTCA
TGTTCAGATCATGCGTCTTAGCATCGAGAACACCTTCGATGGAGTCTACG
ACCAAAACCATAGGTAACAATACTGGTACGACGATGCTATTGAATAAGGC
GAAAAATATGGCTAGAAGACTAGTTGCCGAACCACATTCCTTTTCAATGA
GACCAAAGAATATAATGCATGATGTCATGGAGACGTTTGGGAACAGCAAT
AAGTTTAACGGGACTGCGTACGTCGTTCGGCACGTTAGTGAAGTAGATGT
CCCGGAGGCTGTCGTTATGGAGGAGCAAGGACACGAGGTGATAGAGCATA
AGAGGGACATTGAGGATGTCCTGAATGATTTAAGCAAGATCACGTTGAAG
AAACACTTGAATATTGAAAACACGACTGCTAACATTAAATCTGCTGACGA
TCCACCGGCTGCACCGTCGTTCACTAAAGATGATAAGAAAAATAAGAAAG
CCAAAGGGAAGCATAAGAGGANNNNNNNNNNGATC