HiSeq102_p (polypeptide) Thaumetopoea pityocampa

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameHiSeq102
Unique NameHiSeq102_p
Typepolypeptide
OrganismThaumetopoea pityocampa (Pine processionary)
Sequence length208
Homology
BLAST of HiSeq102 vs. null
Match: PREDICTED: (protein smg8-like [Papilio polytes])

HSP 1 Score: 267.314 bits (682), Expect = 1.324e-83
Identity = 139/208 (66.83%), Postives = 153/208 (73.56%), Query Frame = 0
Query:    5 SARDVSSLVRGLVQLCSNAAPPAPAERPTFRQFLQGHIDLAFGEGFDDNVGKYAMSTSFFELPSASSWRAAAQALTPVYLEVPQGADESPP-GALYDTLATDVRFSQARCAKVLPVAQASYREGLPAHYSSQHHAXI--------------------RLEAVSLWRSAQLAGRGRGKA-PHHLLTVKIFIGFEYECPRRHRFMMSSPD 190
            SARDVSSLVRGLVQ+C+   P  P++RP+FRQFLQGHIDLAFGEGFDDNVGKYAMSTSFFELPSASSWR AAQ LTP+YL+  +  DE    G L+DTLATDVRFSQARCAKVLP+AQASY EGLP +YSSQ HA                      + E  + WR    A RGRGKA P H LTVKIFIGFEYEC R HRFMMSSP+
Sbjct:  243 SARDVSSLVRGLVQMCNGTEPDPPSDRPSFRQFLQGHIDLAFGEGFDDNVGKYAMSTSFFELPSASSWRRAAQVLTPIYLQTDKSDDEKESGGVLFDTLATDVRFSQARCAKVLPIAQASYTEGLPPYYSSQQHAHKVSVALGELEAMARGPLMEPEQTEQANAWR----ASRGRGKATPQHHLTVKIFIGFEYECTRGHRFMMSSPE 446          
BLAST of HiSeq102 vs. null
Match: PREDICTED: (protein SMG8 [Papilio machaon])

HSP 1 Score: 216.083 bits (549), Expect = 7.873e-63
Identity = 105/135 (77.78%), Postives = 116/135 (85.93%), Query Frame = 0
Query:    5 SARDVSSLVRGLVQLCSNAAPPAPAERPTFRQFLQGHIDLAFGEGFDDNVGKYAMSTSFFELPSASSWRAAAQALTPVYLEVPQGADESPP-GALYDTLATDVRFSQARCAKVLPVAQASYREGLPAHYSSQHHA 138
            SARDVSSLVRGLVQ+C+   P  P+ERP+FRQFLQGHIDLAFGEGFDDNVGKYAMSTSFFELPSASSWR AAQ LTP+YL+  +  +E    G L+DTLATDVRFSQARCAKVLP+AQASY EGLP +YSSQ HA
Sbjct:  243 SARDVSSLVRGLVQMCNGTEPEPPSERPSFRQFLQGHIDLAFGEGFDDNVGKYAMSTSFFELPSASSWRKAAQVLTPIYLQSDKCDEEKESGGVLFDTLATDVRFSQARCAKVLPIAQASYTEGLPPYYSSQQHA 377          
BLAST of HiSeq102 vs. null
Match: Protein (SMG8 [Papilio machaon])

HSP 1 Score: 215.312 bits (547), Expect = 5.367e-62
Identity = 105/135 (77.78%), Postives = 116/135 (85.93%), Query Frame = 0
Query:    5 SARDVSSLVRGLVQLCSNAAPPAPAERPTFRQFLQGHIDLAFGEGFDDNVGKYAMSTSFFELPSASSWRAAAQALTPVYLEVPQGADESPP-GALYDTLATDVRFSQARCAKVLPVAQASYREGLPAHYSSQHHA 138
            SARDVSSLVRGLVQ+C+   P  P+ERP+FRQFLQGHIDLAFGEGFDDNVGKYAMSTSFFELPSASSWR AAQ LTP+YL+  +  +E    G L+DTLATDVRFSQARCAKVLP+AQASY EGLP +YSSQ HA
Sbjct:  243 SARDVSSLVRGLVQMCNGTEPEPPSERPSFRQFLQGHIDLAFGEGFDDNVGKYAMSTSFFELPSASSWRKAAQVLTPIYLQSDKCDEEKESGGVLFDTLATDVRFSQARCAKVLPIAQASYTEGLPPYYSSQQHA 377          
BLAST of HiSeq102 vs. null
Match: Protein (SMG8 [Papilio xuthus])

HSP 1 Score: 213.772 bits (543), Expect = 1.597e-60
Identity = 103/135 (76.30%), Postives = 116/135 (85.93%), Query Frame = 0
Query:    5 SARDVSSLVRGLVQLCSNAAPPAPAERPTFRQFLQGHIDLAFGEGFDDNVGKYAMSTSFFELPSASSWRAAAQALTPVYLEVPQGADESPP-GALYDTLATDVRFSQARCAKVLPVAQASYREGLPAHYSSQHHA 138
            SARDVS+LVRGLVQ+C+   P  P+ERP+FRQFLQGHIDLAFGEGFDDNVGKYAMSTSFFELPSA+SWR AAQ LTP+YL+  +  +E    G L+DTLATDVRFSQARCAKVLP+AQASY EGLP +YSSQ HA
Sbjct:  243 SARDVSTLVRGLVQMCNGTEPETPSERPSFRQFLQGHIDLAFGEGFDDNVGKYAMSTSFFELPSATSWRKAAQVLTPIYLQNDKCDEEKESGGVLFDTLATDVRFSQARCAKVLPIAQASYTEGLPPYYSSQQHA 377          

HSP 2 Score: 76.6406 bits (187), Expect = 1.030e-12
Identity = 49/106 (46.23%), Postives = 58/106 (54.72%), Query Frame = 0
Query:  118 PVAQASYREGLPAH----------YSSQHHAXIRLEAVSLWRSAQLAGRGRGKA-PHHLLTVKIFIGFEYECPRRHRFMMSSPDTVVSGGGARGA----GGAGARL 208
            P +  S+  GLP H          Y       +++E  + WR    A RGRGKA P H LTVKIFIGFEYEC R HRFMM SP+   SGG + G+      AGARL
Sbjct:  617 PSSLYSHSLGLPEHLQPGFLPHTNYLLPWDCVVKMEQANAWR----ASRGRGKAMPQHHLTVKIFIGFEYECTRGHRFMMCSPEGAPSGGVSSGSWARDAAAGARL 718          

HSP 3 Score: 76.6406 bits (187), Expect = 1.030e-12
Identity = 49/106 (46.23%), Postives = 58/106 (54.72%), Query Frame = 0
Query:  118 PVAQASYREGLPAH----------YSSQHHAXIRLEAVSLWRSAQLAGRGRGKA-PHHLLTVKIFIGFEYECPRRHRFMMSSPDTVVSGGGARGA----GGAGARL 208
            P +  S+  GLP H          Y       +++E  + WR    A RGRGKA P H LTVKIFIGFEYEC R HRFMM SP+   SGG + G+      AGARL
Sbjct:  889 PSSLYSHSLGLPEHLQPGFLPHTNYLLPWDCVVKMEQANAWR----ASRGRGKAMPQHHLTVKIFIGFEYECTRGHRFMMCSPEGAPSGGVSSGSWARDAAAGARL 990          
BLAST of HiSeq102 vs. null
Match: PREDICTED: (protein SMG8 [Papilio xuthus])

HSP 1 Score: 211.075 bits (536), Expect = 2.816e-60
Identity = 102/135 (75.56%), Postives = 115/135 (85.19%), Query Frame = 0
Query:    5 SARDVSSLVRGLVQLCSNAAPPAPAERPTFRQFLQGHIDLAFGEGFDDNVGKYAMSTSFFELPSASSWRAAAQALTPVYLEVPQGADESPP-GALYDTLATDVRFSQARCAKVLPVAQASYREGLPAHYSSQHHA 138
            SARDVS+LVRGLVQ+C+   P   +ERP+FRQFLQGHIDLAFGEGFDDNVGKYAMSTSFFELPSA+SWR AAQ LTP+YL+  +  +E    G L+DTLATDVRFSQARCAKVLP+AQASY EGLP +YSSQ HA
Sbjct:  243 SARDVSTLVRGLVQMCNGTEPETTSERPSFRQFLQGHIDLAFGEGFDDNVGKYAMSTSFFELPSATSWRKAAQVLTPIYLQNDKCDEEKESGGVLFDTLATDVRFSQARCAKVLPIAQASYTEGLPPYYSSQQHA 377          

HSP 2 Score: 77.0258 bits (188), Expect = 6.330e-13
Identity = 49/106 (46.23%), Postives = 58/106 (54.72%), Query Frame = 0
Query:  118 PVAQASYREGLPAH----------YSSQHHAXIRLEAVSLWRSAQLAGRGRGKA-PHHLLTVKIFIGFEYECPRRHRFMMSSPDTVVSGGGARGA----GGAGARL 208
            P +  S+  GLP H          Y       +++E  + WR    A RGRGKA P H LTVKIFIGFEYEC R HRFMM SP+   SGG + G+      AGARL
Sbjct:  617 PSSLYSHSLGLPEHLQPGFLPHTNYLLPWDCVVKMEQANAWR----ASRGRGKAMPQHHLTVKIFIGFEYECTRGHRFMMCSPEGAPSGGVSSGSWARDAAAGARL 718          
BLAST of HiSeq102 vs. null
Match: PREDICTED: (protein SMG8 [Amyelois transitella])

HSP 1 Score: 203.756 bits (517), Expect = 1.183e-57
Identity = 100/135 (74.07%), Postives = 110/135 (81.48%), Query Frame = 0
Query:    4 ASARDVSSLVRGLVQLCSNAAPPAPAERPTFRQFLQGHIDLAFGEGFDDNVGKYAMSTSFFELPSASSWRAAAQALTPVYLEVPQGADESPPGALYDTLATDVRFSQARCAKVLPVAQASYREGLPAHYSSQHHA 138
            ++ARDVSSLVRGLV+ CS      P  RPTF++FLQ HIDLAF +GFDDNVGKYAMSTSFFELPSA++WR AAQAL PVYL V         GALYD LATDVRFSQARCAKVLP+AQASY EGLP+HYSSQHHA
Sbjct:  242 SAARDVSSLVRGLVERCSGDVTSQPGVRPTFKEFLQAHIDLAFRDGFDDNVGKYAMSTSFFELPSATTWRQAAQALAPVYLSVETEDQSESGGALYDALATDVRFSQARCAKVLPIAQASYTEGLPSHYSSQHHA 376          

HSP 2 Score: 68.5514 bits (166), Expect = 5.662e-10
Identity = 42/81 (51.85%), Postives = 45/81 (55.56%), Query Frame = 0
Query:  123 SYREGLPAH----------YSSQHHAXIRLEAVSLWRSAQLAGRGRGKAPHHLLTVKIFIGFEYECPRRHRFMMSSPDTVV 193
            S+  GLP H          Y       +RLE    WR A         APHHL TVKIFIGFEYECPR HRFMMSSPDT+V
Sbjct:  617 SHSVGLPEHLQPGFLPHTNYLLPWDCAVRLEQAPTWRGAA-GRARGKAAPHHL-TVKIFIGFEYECPRGHRFMMSSPDTIV 695          
BLAST of HiSeq102 vs. null
Match: PREDICTED: (protein SMG8 [Bombyx mori])

HSP 1 Score: 197.978 bits (502), Expect = 2.141e-55
Identity = 102/139 (73.38%), Postives = 112/139 (80.58%), Query Frame = 0
Query:    3 LASARDVSSLVRGLVQLCSNAAPPAPA-ERPTFRQFLQGHIDLAFGEGFDDNVGKYAMSTSFFELPSASSWRAAAQALTPVYLEVPQGADE-SPPG-ALYDTLATDVRFSQARCAKVLPVAQASYREGLPAHYSSQHHA 138
            + +ARDVS LV GLV++C  A P  PA ERP F QFLQGHIDLAF EGFDDNVGKYAMSTSFFELPSA SWR AA+ LTP+YLE P   DE S  G  L+  LATDVRFSQARCAK+LP+AQASY EG+PAHYSSQHHA
Sbjct:  241 VCNARDVSVLVSGLVRMCGGAQPDRPAGERPGFAQFLQGHIDLAFAEGFDDNVGKYAMSTSFFELPSAESWRTAAEVLTPLYLEDPVQVDEGSEIGRTLFLILATDVRFSQARCAKILPIAQASYTEGMPAHYSSQHHA 379          

HSP 2 Score: 90.8929 bits (224), Expect = 1.211e-17
Identity = 53/97 (54.64%), Postives = 58/97 (59.79%), Query Frame = 0
Query:  123 SYREGLPAH----------YSSQHHAXIRLEAVSLWRSAQLAGRGRGK-APHHLLTVKIFIGFEYECPRRHRFMMSSPDTVVSGGGARGAGGAGARL 208
            S+  GLP H          Y       +R+E VSLWR AQ + RGRGK  P H LTVKIFIGFEYECPR HR MMSSP + VSGG       AGARL
Sbjct:  624 SHSMGLPDHLQPGFLPHTNYLLPWDCAVRMEQVSLWRMAQASSRGRGKPTPPHHLTVKIFIGFEYECPRGHRLMMSSPTSAVSGGSC--GREAGARL 718          
BLAST of HiSeq102 vs. null
Match: hypothetical (protein KGM_15296 [Danaus plexippus])

HSP 1 Score: 186.808 bits (473), Expect = 1.876e-52
Identity = 92/136 (67.65%), Postives = 105/136 (77.21%), Query Frame = 0
Query:    3 LASARDVSSLVRGLVQLCSNAAPPAPAERPTFRQFLQGHIDLAFGEGFDDNVGKYAMSTSFFELPSASSWRAAAQALTPVYLEVPQGADESPPGALYDTLATDVRFSQARCAKVLPVAQASYREGLPAHYSSQHHA 138
            + SARD SSL+RGLVQ+CS +  P  ++RP+FR FLQGH++LAFGEGFDDNVGKYAMSTS+FELPSAS WR AA+ L   Y              L+D LATDVRFSQARCAKVLP+AQASY EGLP HYSSQHHA
Sbjct:  239 VGSARDTSSLLRGLVQMCSGSGAPTSSDRPSFRHFLQGHLNLAFGEGFDDNVGKYAMSTSYFELPSASCWRGAARVLHRQY--------SQQSTVLFDALATDVRFSQARCAKVLPIAQASYAEGLPPHYSSQHHA 366          
BLAST of HiSeq102 vs. null
Match: hypothetical (protein, partial [Amblyomma sculptum])

HSP 1 Score: 99.3673 bits (246), Expect = 1.218e-20
Identity = 52/127 (40.94%), Postives = 74/127 (58.27%), Query Frame = 0
Query:   11 SLVRGLVQLCSNAAPPAPAERPTFRQFLQGHIDLAFGEGFDDNVGKYAMSTSFFELPSASSWRAAAQALTPVYLEVPQGADESPPGALYDTLATDVRFSQARCAKVLPVAQASYREGLPAHYSSQHH 137
            +L    + L    A  A ++  +F  FL  HI+LA  +GFDDNVG++ +   F ELPS S+W   A  L  ++L     A  +   +L   L  DVRFS+ RC KVLP+A A+Y+EGLP HY++ +H
Sbjct:  271 ALSEDFLSLSLGGADEASSQEHSFPAFLLQHIELALSKGFDDNVGRHPVPADF-ELPSVSTWFKVAVKLRDLFLSTTTAAGSAMASSLKGALDIDVRFSEGRCGKVLPLATAAYQEGLPTHYTADYH 396          
BLAST of HiSeq102 vs. null
Match: hypothetical (protein CAPTEDRAFT_223495 [Capitella teleta])

HSP 1 Score: 97.0561 bits (240), Expect = 9.072e-20
Identity = 53/134 (39.55%), Postives = 78/134 (58.21%), Query Frame = 0
Query:   34 FRQFLQGHIDLAFGEGFDDNVGKYAMSTSFFELPSASSWRAAAQALTPVYLEVPQGAD-ESPPGALYDTLATDVRFSQARCAKVLPVAQASYREGLPAHYSSQHHAXIRLEAVSLWRSAQLAGRGRGKAPHHLL 166
            FR+FL  HI+LA  +GFDDN+G+  +    FE PS   W  AAQA+   + E P+    ++  G L++ L T+ RFS+ RC KVLP+A+ +Y+EGLP HY+   H  + ++A  ++         RG A H  L
Sbjct:  329 FREFLSQHIELALSKGFDDNMGRNPVPP-VFESPSLKVWLEAAQAVHAFFFEEPKDIKAKAHFGQLHNLLHTNARFSEGRCIKVLPLAEKAYQEGLPHHYTQADHLAMLVQAKRVFMQ-----HARGPACHQYL 456          
The following BLAST results are available for this feature:
BLAST of HiSeq102 vs. null
Analysis Date: 2017-08-29 (Blastp: Transcriptome 1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
PREDICTED:1.324e-8366.83protein smg8-like [Papilio polytes][more]
PREDICTED:7.873e-6377.78protein SMG8 [Papilio machaon][more]
Protein5.367e-6277.78SMG8 [Papilio machaon][more]
Protein1.597e-6076.30SMG8 [Papilio xuthus][more]
PREDICTED:2.816e-6075.56protein SMG8 [Papilio xuthus][more]
PREDICTED:1.183e-5774.07protein SMG8 [Amyelois transitella][more]
PREDICTED:2.141e-5573.38protein SMG8 [Bombyx mori][more]
hypothetical1.876e-5267.65protein KGM_15296 [Danaus plexippus][more]
hypothetical1.218e-2040.94protein, partial [Amblyomma sculptum][more]
hypothetical9.072e-2039.55protein CAPTEDRAFT_223495 [Capitella teleta][more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
InterPro
Analysis Name: InterProScan: Transcriptome 1.0
Date Performed: 2017-08-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019354Smg8/Smg9PFAMPF10220DUF2146coord: 33..148
e-value: 4.4E-13
score: 48.0
coord: 155..198
e-value: 1.5E-11
score: 42.9
NoneNo IPR availablePANTHERPTHR13091AMPLIFIED IN BREAST CANCER 2-RELATEDcoord: 33..145
NoneNo IPR availableSIGNALP_GRAM_POSITIVESignalP-TMSignalP-TMcoord: 1..29
score: 0.487
IPR028802Protein SMG8PANTHERPTHR13091:SF0PROTEIN SMG8coord: 33..145

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan: Transcriptome 1.02017-08-29
Blastp: Transcriptome 1.0 vs NR2017-08-29
Blast2GO: Transcriptome 1.02017-08-29
Transcriptome denovo Assembly (v1.0) of Thaumetopoea pityocampa2016-11-28
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
HiSeq102HiSeq102Thaumetopoea pityocampamRNA?


Sequences
The following sequences are available for this feature:

polypeptide sequence

>HiSeq102_p ID=HiSeq102_p|Name=HiSeq102|organism=Thaumetopoea pityocampa|type=polypeptide|length=208bp
RGLASARDVSSLVRGLVQLCSNAAPPAPAERPTFRQFLQGHIDLAFGEGF
DDNVGKYAMSTSFFELPSASSWRAAAQALTPVYLEVPQGADESPPGALYD
TLATDVRFSQARCAKVLPVAQASYREGLPAHYSSQHHAXIRLEAVSLWRS
AQLAGRGRGKAPHHLLTVKIFIGFEYECPRRHRFMMSSPDTVVSGGGARG
AGGAGARL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028802SMG8
IPR019354Smg8/Smg9
Vocabulary: Biological Process
TermDefinition
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay