HiSeq10398_p (polypeptide) Thaumetopoea pityocampa

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameHiSeq10398
Unique NameHiSeq10398_p
Typepolypeptide
OrganismThaumetopoea pityocampa (Pine processionary)
Sequence length167
Homology
[Close]
BLAST of HiSeq10398 vs. null
Match: PREDICTED: (40S ribosomal protein S24 [Amyelois transitella] >gi|154091274|gb|ABS57445.1| ribosomal protein S24 [Heliconius melpomene] >gi|342356363|gb|AEL28840.1| ribosomal protein S24 [Heliconius melpomene cythera])

HSP 1 Score: 263.462 bits (672), Expect = 1.654e-88
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 
Query:   37 SEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAAAKK 167
            SEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAAAKK
Sbjct:    2 SEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAAAKK 132
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BLAST of HiSeq10398 vs. null
Match: ribosomal (protein S24 [Biston betularia] >gi|914546630|gb|KOB59867.1| 40S ribosomal protein S24 [Operophtera brumata])

HSP 1 Score: 262.692 bits (670), Expect = 3.766e-88
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 0 
Query:   37 SEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAAAKK 167
            SEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL+YDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAAAKK
Sbjct:    2 SEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALLYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAAAKK 132
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BLAST of HiSeq10398 vs. null
Match: ribosomal (protein S24 [Bombyx mori] >gi|914097305|ref|NP_001298288.1| 40S ribosomal protein S24 [Papilio polytes] >gi|914615072|ref|NP_001298806.1| 40S ribosomal protein S24 [Papilio xuthus] >gi|943942851|ref|XP_014354937.1| PREDICTED: 40S ribosomal protein S24 [Papilio machaon] >gi|46394422|gb|AAS91555.1| ribosomal protein S24 [Bombyx mori] >gi|54609331|gb|AAV34881.1| ribosomal protein S24 [Bombyx mori] >gi|268306388|gb|ACY95315.1| ribosomal protein S24 [Manduca sexta] >gi|357606055|gb|EHJ64900.1| ribosomal protein S24 [Danaus plexippus] >gi|389608413|dbj|BAM17816.1| ribosomal protein S24 [Papilio xuthus] >gi|389610935|dbj|BAM19078.1| ribosomal protein S24 [Papilio polytes] >gi|930650812|gb|KPI93157.1| 40S ribosomal protein S24 [Papilio xuthus] >gi|930677613|gb|KPJ17670.1| 40S ribosomal protein S24 [Papilio machaon])

HSP 1 Score: 262.692 bits (670), Expect = 3.978e-88
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 0 
Query:   37 SEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAAAKK 167
            SEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAA+KK
Sbjct:    2 SEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAASKK 132
[Close]
BLAST of HiSeq10398 vs. null
Match: RecName: (Full=40S ribosomal protein S24 >gi|15213834|gb|AAK92192.1|AF400220_1 ribosomal protein S24 [Spodoptera frugiperda] >gi|743583257|gb|JAG64887.1| hypothetical protein [Lygus hesperus])

HSP 1 Score: 262.307 bits (669), Expect = 5.064e-88
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 0 
Query:   37 SEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAAAKK 167
            +EGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAAAKK
Sbjct:    2 TEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAAAKK 132
[Close]
BLAST of HiSeq10398 vs. null
Match: 40S (ribosomal protein S24 [Pararge aegeria])

HSP 1 Score: 260.381 bits (664), Expect = 2.625e-87
Identity = 129/131 (98.47%), Postives = 130/131 (99.24%), Query Frame = 0 
Query:   37 SEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAAAKK 167
            +EGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGF LIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAAAKK
Sbjct:    2 TEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFGLIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAAAKK 132
[Close]
BLAST of HiSeq10398 vs. null
Match: ribosomal (protein S24 [Euphydryas aurinia])

HSP 1 Score: 256.529 bits (654), Expect = 9.378e-86
Identity = 128/131 (97.71%), Postives = 129/131 (98.47%), Query Frame = 0 
Query:   37 SEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAAAKK 167
            SEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRL RHGLYEKKRPT KQRKERKNRMKKVRGTKKSKVGA+AKK
Sbjct:    2 SEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLTRHGLYEKKRPTCKQRKERKNRMKKVRGTKKSKVGASAKK 132
[Close]
BLAST of HiSeq10398 vs. null
Match: 40S (ribosomal protein S24 [Plutella xylostella] >gi|49532876|dbj|BAD26673.1| Ribosomal protein S24 [Plutella xylostella])

HSP 1 Score: 251.521 bits (641), Expect = 1.025e-83
Identity = 124/131 (94.66%), Postives = 128/131 (97.71%), Query Frame = 0 
Query:   37 SEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAAAKK 167
            SEGTATIRTRKFMTNRLLARKQMVCDV+HPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLD AKKFEPKHRLARHGLYEKKRPT KQRKERKN+ ++VRGTKKSKVGAAAKK
Sbjct:    2 SEGTATIRTRKFMTNRLLARKQMVCDVIHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDFAKKFEPKHRLARHGLYEKKRPTAKQRKERKNQDEEVRGTKKSKVGAAAKK 132
[Close]
BLAST of HiSeq10398 vs. null
Match: PREDICTED: (40S ribosomal protein S24 isoform X3 [Aethina tumida])

HSP 1 Score: 247.284 bits (630), Expect = 5.143e-82
Identity = 121/131 (92.37%), Postives = 127/131 (96.95%), Query Frame = 0 
Query:   37 SEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAAAKK 167
            +EGTATIRTRKFMTNRLLARKQMV DVLHPG+P+V KT+IREKLAKMYKVTPDVVFVFGF+TNFGGGKSTGFALIYDTLD AKKFEPKHRLARHGLYEKK+ TRKQRKERKNRMKKVRGTKKSKVGAAAKK
Sbjct:    2 TEGTATIRTRKFMTNRLLARKQMVVDVLHPGQPSVKKTDIREKLAKMYKVTPDVVFVFGFRTNFGGGKSTGFALIYDTLDFAKKFEPKHRLARHGLYEKKQQTRKQRKERKNRMKKVRGTKKSKVGAAAKK 132
[Close]
BLAST of HiSeq10398 vs. null
Match: PREDICTED: (40S ribosomal protein S24 isoform X1 [Aethina tumida] >gi|1133421722|ref|XP_019866498.1| PREDICTED: 40S ribosomal protein S24 isoform X2 [Aethina tumida])

HSP 1 Score: 246.514 bits (628), Expect = 1.017e-81
Identity = 121/131 (92.37%), Postives = 127/131 (96.95%), Query Frame = 0 
Query:   37 SEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAAAKK 167
            +EGTATIRTRKFMTNRLLARKQMV DVLHPG+P+V KT+IREKLAKMYKVTPDVVFVFGF+TNFGGGKSTGFALIYDTLD AKKFEPKHRLARHGLYEKK+ TRKQRKERKNRMKKVRGTKKSKVGAAAKK
Sbjct:    2 TEGTATIRTRKFMTNRLLARKQMVVDVLHPGQPSVKKTDIREKLAKMYKVTPDVVFVFGFRTNFGGGKSTGFALIYDTLDFAKKFEPKHRLARHGLYEKKQQTRKQRKERKNRMKKVRGTKKSKVGAAAKK 132
[Close]
BLAST of HiSeq10398 vs. null
Match: PREDICTED: (40S ribosomal protein S24 isoform X2 [Anoplophora glabripennis])

HSP 1 Score: 246.128 bits (627), Expect = 1.442e-81
Identity = 120/131 (91.60%), Postives = 127/131 (96.95%), Query Frame = 0 
Query:   37 SEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAAAKK 167
            +EGTATIRTRKFMTNRLLARKQMV DVLHPG+P+V KT+IREKLAKMYKVTPDVVFVFGF+TNFGGGKSTGFALIYDTLD AKKFEPKHRLARHGLYEKK+ TRKQRKERKNRMKKVRGTKKSKVGAA+KK
Sbjct:    2 TEGTATIRTRKFMTNRLLARKQMVVDVLHPGQPSVKKTDIREKLAKMYKVTPDVVFVFGFRTNFGGGKSTGFALIYDTLDFAKKFEPKHRLARHGLYEKKQQTRKQRKERKNRMKKVRGTKKSKVGAASKK 132
The following BLAST results are available for this feature:
BLAST of HiSeq10398 vs. null
Analysis Date: 2017-08-29 (Blastp: Transcriptome 1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
PREDICTED:1.654e-88100.0040S ribosomal protein S24 [Amyelois transitella] >... [more]
ribosomal3.766e-8899.24protein S24 [Biston betularia] >gi|914546630|gb|KO... [more]
ribosomal3.978e-8899.24protein S24 [Bombyx mori] >gi|914097305|ref|NP_001... [more]
RecName:5.064e-8899.24Full=40S ribosomal protein S24 >gi|15213834|gb|AAK... [more]
40S2.625e-8798.47ribosomal protein S24 [Pararge aegeria][more]
ribosomal9.378e-8697.71protein S24 [Euphydryas aurinia][more]
40S1.025e-8394.66ribosomal protein S24 [Plutella xylostella] >gi|49... [more]
PREDICTED:5.143e-8292.3740S ribosomal protein S24 isoform X3 [Aethina tumi... [more]
PREDICTED:1.017e-8192.3740S ribosomal protein S24 isoform X1 [Aethina tumi... [more]
PREDICTED:1.442e-8191.6040S ribosomal protein S24 isoform X2 [Anoplophora ... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterProScan: Transcriptome 1.0
Date Performed: 2017-08-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domainGENE3D3.30.70.330coord: 42..142
e-value: 1.8E-51
score: 171.6
coord: 11..33
e-value: 9.0E-5
score: 21.7
IPR001976Ribosomal protein S24ePFAMPF01282Ribosomal_S24ecoord: 59..140
e-value: 1.4E-38
score: 130.4
IPR001976Ribosomal protein S24ePANTHERPTHR1049640S RIBOSOMAL PROTEIN S24coord: 24..167
IPR001976Ribosomal protein S24ePRODOMPD006052coord: 49..120
e-value: 4.0E-36
score: 377.0
IPR001976Ribosomal protein S24eHAMAPMF_00545Ribosomal_S24ecoord: 39..140
score: 19.622
IPR018098Ribosomal S24e conserved sitePROSITEPS00529RIBOSOMAL_S24Ecoord: 100..122
IPR012678Ribosomal protein L23/L15e core domainSUPERFAMILY54189Ribosomal proteins S24e, L23 and L15ecoord: 42..142

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan: Transcriptome 1.02017-08-29
Blastp: Transcriptome 1.0 vs NR2017-08-29
Blast2GO: Transcriptome 1.02017-08-29
Transcriptome denovo Assembly (v1.0) of Thaumetopoea pityocampa2016-11-28
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
HiSeq10398HiSeq10398Thaumetopoea pityocampamRNA?


Sequences
The following sequences are available for this feature:

polypeptide sequence

>HiSeq10398_p ID=HiSeq10398_p|Name=HiSeq10398|organism=Thaumetopoea pityocampa|type=polypeptide|length=167bp
MCDNVXLIFHRLLARKQMVCDVLHPGKPTVXNTYXXSEGTATIRTRKFMT
NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNF
GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRM
KKVRGTKKSKVGAAAKK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR012678Ribosomal_L23/L15e_core_dom_sf
IPR018098Ribosomal_S24e_CS
IPR001976Ribosomal_S24e
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation