g25.t1 (mRNA) Venturia canescens

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Nameg25.t1
Unique Nameg25.t1
TypemRNA
OrganismVenturia canescens (vcanescens)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1contigscaffold_1:201346..203043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Venturia canescens OGS 1.1 201901312019-01-31
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
g25g25Venturia canescensgenescaffold_1 201346..203043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
g25.t1g25.t1-PAVenturia canescenspolypeptidescaffold_1 201346..203043 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
g25.t1-start_codong25.t1-start_codonVenturia canescensstart_codonscaffold_1 201346..201348 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
g25.t1-CDSg25.t1-CDS-1Venturia canescensCDSscaffold_1 201346..201719 +
g25.t1-CDSg25.t1-CDS-2Venturia canescensCDSscaffold_1 201929..202134 +
g25.t1-CDSg25.t1-CDS-3Venturia canescensCDSscaffold_1 202367..202734 +
g25.t1-CDSg25.t1-CDS-4Venturia canescensCDSscaffold_1 202843..203043 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
g25.t1-exong25.t1-exon-1Venturia canescensexonscaffold_1 201346..201719 +
g25.t1-exong25.t1-exon-2Venturia canescensexonscaffold_1 201929..202134 +
g25.t1-exong25.t1-exon-3Venturia canescensexonscaffold_1 202367..202734 +
g25.t1-exong25.t1-exon-4Venturia canescensexonscaffold_1 202843..203043 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
g25.t1-introng25.t1-intronVenturia canescensintronscaffold_1 202735..202842 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
g25.t1-stop_codong25.t1-stop_codonVenturia canescensstop_codonscaffold_1 203041..203043 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>g25.t1 ID=g25.t1|Name=g25.t1|organism=Venturia canescens|type=mRNA|length=1149bp|location=Sequence derived from alignment at scaffold_1:201346..203043+ (Venturia canescens)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATAAAAAAAGCAATTTTACGAGAATTGATAAACCATTTATACCTCG
GTGGATCCACGATCGCACAGAATTGACGCCGCTGGAGCAATCTATTGAAA
AATTCCGTTCAAAATTCCGAACACGGGAACCAAGCAACGTTTTTAGCCGT
TCTAGAATCCTTGGCTACTTCAGTGTAGACGGTGATGGTAATTATTTATC
CGATTCATCAGGTCTGAGATATTTCAATCCAATGGAAAACCAAGTTCCCA
TCGATCTGAATGAAGGTTTTGACGACTTTGTGGTAAGCCAAGAAAAAATA
CATAAAGAACGAAAGTTGCAGTGGATAGATGAGAATCGTGAAACGATCAA
AGCTGCTCCTGAAACTGGACGCTTGATAGGACCAAATTTTGTATGCGCCC
CTCGAATATTAGTGCATTTCATGTCCATTCCTTACGTACCAATTCATAGC
TGGAATTTGTGTGCTGCAAAATGGAAAGGAACAATATACATTAATACTGC
TAAAGGTTTTAAAAGAGGGAACTATGAAAATGAAGAAAAATTTTGGTATT
GGAACCGCAAATTCTACGAATACTTCTCAGAATCTCCTGAGGAAGCTCCG
AATCCTAAAAAACCATTGGCAGAGTCTGAAGAATTTCGATGTATCTATCA
GCGGCAGATTGGCCAACATTCTGTGCTGTATTCGGCTTTGCGAGGGGCTG
CATTGCCCAACAAAATATTTGCAGATCCAATACCGCTTGATGAACTTAAA
TTCATCGATTTGCGTACAAGCAAGTCAATCAAACATAAAAGACATGAGGT
CTCTTTGAAGAAATACATATTTTTAAGATGGTGGACAAATGCAATTCTCG
TCAATGATGATCAAGTGTTATGTGGTTTTCGAGATGATAATGGAATTGTC
CACGAATTGAAAACATACAAAACTGATGATCTGCCCAAATTGTCCGAGGG
TTGTTGGGATCCACAGAAATGCTTTGACTCCTGTGAAACAATCTTGACAA
AAATTGCAGAAACTGTCGTTGACGATTGTGACAAAACGATCTACCAAATT
GTCAAGAGACGCAACGAAGACTTTGAGATCAACAAGTTGGAGCCTTCGGA
AGAAAATTCTGTTGTACCAGAATGGTATAAAAATTCAATGATTCAATAA
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protein sequence of g25.t1

>g25.t1-PA ID=g25.t1-PA|Name=g25.t1|organism=Venturia canescens|type=polypeptide|length=382bp
MDKKSNFTRIDKPFIPRWIHDRTELTPLEQSIEKFRSKFRTREPSNVFSR
SRILGYFSVDGDGNYLSDSSGLRYFNPMENQVPIDLNEGFDDFVVSQEKI
HKERKLQWIDENRETIKAAPETGRLIGPNFVCAPRILVHFMSIPYVPIHS
WNLCAAKWKGTIYINTAKGFKRGNYENEEKFWYWNRKFYEYFSESPEEAP
NPKKPLAESEEFRCIYQRQIGQHSVLYSALRGAALPNKIFADPIPLDELK
FIDLRTSKSIKHKRHEVSLKKYIFLRWWTNAILVNDDQVLCGFRDDNGIV
HELKTYKTDDLPKLSEGCWDPQKCFDSCETILTKIAETVVDDCDKTIYQI
VKRRNEDFEINKLEPSEENSVVPEWYKNSMIQ
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mRNA from alignment at scaffold_1:201346..203043+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>g25.t1 ID=g25.t1|Name=g25.t1|organism=Venturia canescens|type=mRNA|length=1698bp|location=Sequence derived from alignment at scaffold_1:201346..203043+ (Venturia canescens)
ATGGATAAAAAAAGCAATTTTACGAGAATTGATAAACCATTTATACCTCG GTGGATCCACGATCGCACAGAATTGACGCCGCTGGAGCAATCTATTGAAA AATTCCGTTCAAAATTCCGAACACGGGAACCAAGCAACGTTTTTAGCCGT TCTAGAATCCTTGGCTACTTCAGTGTAGACGGTGATGGTAATTATTTATC CGATTCATCAGGTCTGAGATATTTCAATCCAATGGAAAACCAAGTTCCCA TCGATCTGAATGAAGGTTTTGACGACTTTGTGGTAAGCCAAGAAAAAATA CATAAAGAACGAAAGTTGCAGTGGATAGATGAGAATCGTGAAACGATCAA AGCTGCTCCTGAAACTGGACGCTTGTAAGTATTAAAAAAATGAGTGCTAT TTTCTAAAATATTGCGCAACAGAATTTATTCAATTTTTCAGTAGCATCAT GTTTTTCGATGATTTCATATTGGATTTTTATTTGTTCGATAGTTAAGATT CCTTCTGAATATTGTTCTACTATTTACTGAAGGAAACGTATCCAGAATAT CAAAATGATTTTCAATGTTTTGAATCTTTGCAGGATAGGACCAAATTTTG TATGCGCCCCTCGAATATTAGTGCATTTCATGTCCATTCCTTACGTACCA ATTCATAGCTGGAATTTGTGTGCTGCAAAATGGAAAGGAACAATATACAT TAATACTGCTAAAGGTTTTAAAAGAGGGAACTATGAAAATGAAGAAAAAT TTTGGTATTGGAACCGCAAATTCTACGAATACTTCTCAGGTAGAAAATTC TGTGTATTTTTATGTATCAATTCGATCGAATGATTATAATAACACTTAAG TACTGGAATCTTTTAAGAATTTTAAGTAGTAATGATTGGTCCAAGTTTAA GAATCCCTCTAACTATTCAACAAATTGAAACATGAGCATAATGACTTTTC TTACTACATGAATGCATATTTATTTTATCAAAATATCCAACATTTGATTT TATTTATTACCTTTCCGTTAGAATCTCCTGAGGAAGCTCCGAATCCTAAA AAACCATTGGCAGAGTCTGAAGAATTTCGATGTATCTATCAGCGGCAGAT TGGCCAACATTCTGTGCTGTATTCGGCTTTGCGAGGGGCTGCATTGCCCA ACAAAATATTTGCAGATCCAATACCGCTTGATGAACTTAAATTCATCGAT TTGCGTACAAGCAAGTCAATCAAACATAAAAGACATGAGGTCTCTTTGAA GAAATACATATTTTTAAGATGGTGGACAAATGCAATTCTCGTCAATGATG ATCAAGTGTTATGTGGTTTTCGAGATGATAATGGAATTGTCCACGAATTG AAAACATACAAAACTGATGATCTGCCCAAATTGTCCGAGGTGCACAGAAA TGTTTTTTTTTTCATTTATTTCCACTAGAGCATTCATTGTTCTCTATAGT TTCCACTGAGTGTGTGTCAATGTTATCGATATTTCATGATTTTTCAGGGT TGTTGGGATCCACAGAAATGCTTTGACTCCTGTGAAACAATCTTGACAAA AATTGCAGAAACTGTCGTTGACGATTGTGACAAAACGATCTACCAAATTG TCAAGAGACGCAACGAAGACTTTGAGATCAACAAGTTGGAGCCTTCGGAA GAAAATTCTGTTGTACCAGAATGGTATAAAAATTCAATGATTCAATAA
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Coding sequence (CDS) from alignment at scaffold_1:201346..203043+

>g25.t1 ID=g25.t1|Name=g25.t1|organism=Venturia canescens|type=CDS|length=1149bp|location=Sequence derived from alignment at scaffold_1:201346..203043+ (Venturia canescens)
ATGGATAAAAAAAGCAATTTTACGAGAATTGATAAACCATTTATACCTCG
GTGGATCCACGATCGCACAGAATTGACGCCGCTGGAGCAATCTATTGAAA
AATTCCGTTCAAAATTCCGAACACGGGAACCAAGCAACGTTTTTAGCCGT
TCTAGAATCCTTGGCTACTTCAGTGTAGACGGTGATGGTAATTATTTATC
CGATTCATCAGGTCTGAGATATTTCAATCCAATGGAAAACCAAGTTCCCA
TCGATCTGAATGAAGGTTTTGACGACTTTGTGGTAAGCCAAGAAAAAATA
CATAAAGAACGAAAGTTGCAGTGGATAGATGAGAATCGTGAAACGATCAA
AGCTGCTCCTGAAACTGGACGCTTGATAGGACCAAATTTTGTATGCGCCC
CTCGAATATTAGTGCATTTCATGTCCATTCCTTACGTACCAATTCATAGC
TGGAATTTGTGTGCTGCAAAATGGAAAGGAACAATATACATTAATACTGC
TAAAGGTTTTAAAAGAGGGAACTATGAAAATGAAGAAAAATTTTGGTATT
GGAACCGCAAATTCTACGAATACTTCTCAGAATCTCCTGAGGAAGCTCCG
AATCCTAAAAAACCATTGGCAGAGTCTGAAGAATTTCGATGTATCTATCA
GCGGCAGATTGGCCAACATTCTGTGCTGTATTCGGCTTTGCGAGGGGCTG
CATTGCCCAACAAAATATTTGCAGATCCAATACCGCTTGATGAACTTAAA
TTCATCGATTTGCGTACAAGCAAGTCAATCAAACATAAAAGACATGAGGT
CTCTTTGAAGAAATACATATTTTTAAGATGGTGGACAAATGCAATTCTCG
TCAATGATGATCAAGTGTTATGTGGTTTTCGAGATGATAATGGAATTGTC
CACGAATTGAAAACATACAAAACTGATGATCTGCCCAAATTGTCCGAGGG
TTGTTGGGATCCACAGAAATGCTTTGACTCCTGTGAAACAATCTTGACAA
AAATTGCAGAAACTGTCGTTGACGATTGTGACAAAACGATCTACCAAATT
GTCAAGAGACGCAACGAAGACTTTGAGATCAACAAGTTGGAGCCTTCGGA
AGAAAATTCTGTTGTACCAGAATGGTATAAAAATTCAATGATTCAATAA
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