g42.t2 (mRNA) Venturia canescens

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Nameg42.t2
Unique Nameg42.t2
TypemRNA
OrganismVenturia canescens (vcanescens)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1contigscaffold_1:349961..352790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Venturia canescens OGS 1.1 201901312019-01-31
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
g42g42Venturia canescensgenescaffold_1 349961..352790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
g42.t2g42.t2-PAVenturia canescenspolypeptidescaffold_1 349961..352790 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
g42.t2-start_codong42.t2-start_codonVenturia canescensstart_codonscaffold_1 349961..349963 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
g42.t2-CDSg42.t2-CDS-1Venturia canescensCDSscaffold_1 349961..350030 +
g42.t2-CDSg42.t2-CDS-2Venturia canescensCDSscaffold_1 350483..350996 +
g42.t2-CDSg42.t2-CDS-3Venturia canescensCDSscaffold_1 351080..351245 +
g42.t2-CDSg42.t2-CDS-4Venturia canescensCDSscaffold_1 351359..351705 +
g42.t2-CDSg42.t2-CDS-5Venturia canescensCDSscaffold_1 351811..352157 +
g42.t2-CDSg42.t2-CDS-6Venturia canescensCDSscaffold_1 352235..352455 +
g42.t2-CDSg42.t2-CDS-7Venturia canescensCDSscaffold_1 352554..352790 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
g42.t2-exong42.t2-exon-1Venturia canescensexonscaffold_1 349961..350030 +
g42.t2-exong42.t2-exon-2Venturia canescensexonscaffold_1 350483..350996 +
g42.t2-exong42.t2-exon-3Venturia canescensexonscaffold_1 351080..351245 +
g42.t2-exong42.t2-exon-4Venturia canescensexonscaffold_1 351359..351705 +
g42.t2-exong42.t2-exon-5Venturia canescensexonscaffold_1 351811..352157 +
g42.t2-exong42.t2-exon-6Venturia canescensexonscaffold_1 352235..352455 +
g42.t2-exong42.t2-exon-7Venturia canescensexonscaffold_1 352554..352790 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
g42.t2-introng42.t2-intronVenturia canescensintronscaffold_1 352456..352553 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
g42.t2-stop_codong42.t2-stop_codonVenturia canescensstop_codonscaffold_1 352788..352790 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>g42.t2 ID=g42.t2|Name=g42.t2|organism=Venturia canescens|type=mRNA|length=1902bp|location=Sequence derived from alignment at scaffold_1:349961..352790+ (Venturia canescens)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTAAAAGGAAAGAACAACACTAAGTCTTTCCACAGCGTTTATAG
AGTGCTGTCCCGTATATGTCGTCAACTCGATGGTTTCATGGCTGATGGCT
CAGTGCCGCCACTGAAGAGTGGTCACGATACTCAAACAATGGGTTTTGCT
ACGCAACAGATGCGCGAGGCATCGGACGTTTCAAGCACAGTTTATGCAGT
CGGCCATTATGCACCAAAAGTTTTGAGAAACTTGAATGCTCAACGGCTCA
AGAATCAGTTCAGCGATGTTGGCATTGTTGCTGGGGACAGTATAATTAGA
GCGCATAGATCAGTTCTGGCAGCTAGTAGCGCTTATTTTAATGCCATGTT
CACTGGCGGTTTGGTAGAAGAGCAACAAGAACTCGTGGAAATTCATTCCG
TCTCTCCCAATATTCTATCCATCCTTATAGATTTTATTTATACTGGCAAT
GTCGACATCACTCAAGATAATGTACAAGAATTATTTGCCGCCGCAGATAT
GCTGGAACTTGACGAAGTTGTCTCTGGCTGCATAGATTATTTGCGTCAAC
AATTACATTACTCCAATGCACTTGGAATTTATAGATTTGCAGAAGCACAC
AACAGACTAGATCTACTGGAGACTGCCCTACACTTTATTGAAGTCAATTT
TCCTCAAGTTTCACAGGAGGAGGAGTTCCTTGATCTGCCAAAGGATTATC
TCATTCATTTTCTCAGTAGCGAGTACATACACGTTGACACTGAATTTCAG
GTCTTCCAAGCAGCGTACAACTGGATCGTCCACGACATTCCAGCGCGTCG
TTGCTACGTATTCGAGATTCTCGGTCACATAAGACTGCGACTGTGCTCAT
TGGCACGTCTCGACAGTGTGATCCTTGAATGCAAGGATGCAAGTTTGATC
GTAGCGTTGCGATCGATACAAAAGGATTTGGTTTCGAACAAAGGCTGTCT
GGTGTCTCTGCGAGCTGAGCCCAGGCTCTGCGCGAAGAAAAATATTCTCG
TTATCGGTGGTTCCAAACGGGAACATACGGCTGACAGTTGGGCAAGAGAT
GCTGAGAGTATTTATGAGACTATTGAAAAATACGACACGTTTACGGGAGA
ATGGAGCGAAGTCGCACCAATAGGAATCGGCAGGATTCTCCCAGGAGTCG
CCGTTCTTGATGGCAAAGTTTACGTGGTCGGTGGTGAGCTGGAGTCGTGT
ATAATAGCAAACGGGGAATGTTACGATCCCCGAGACAACGTTTGGACGTC
AATTGCGTGTATGACAGAGCCCAGATGCGAATTTGGGCTTTGTGCGCTCG
ATAACGCGCTTTACGCTTTTGGTGGATGGGTGGGTGAGGACATTGGCGGC
TCAATTGAGACTTATGACCCTTTGACGAATAAATGGGAACTGCATGGTCA
ACTGCCCGAGCCTCGATTTAGCATGGGCGTCGTGGCTTACGAGGGATTGA
TTTACGTAATCGGCGGCTGCACCCACGACAGCAGGCATCGACAAGACACG
ATGACCTACAACCCCGTTACGCGCGAGTGGAACAGTCTCGCGCCCATGCT
CACACCTCGATCTCAAATGGGAATAACTATTTTGGACGGTTATCTTTACG
TAGTTGGTGGTACGAACAAGAATCAAGAGTTTCGCACCACCGTCGAGAGA
TATTCTTTCGAAAAGAATAAATGGACGGCTGTAGCTCCGATGAGCATCGG
GAGATCTTATCCAGCGGTGGCAGCGGCCGACGGTCGTTTGTACGTGATCG
GTGGCGATCAATCACAGGATATTAATTTCTATCGTACCCAAATAACGATA
TCAACGGTGGAATGTTACGACCCAAATTCCAACAAGTGGGAAGAATGCAC
ATCGTTGCCAACGAGTCGGGGCGAGGCTGTCGCAGTAATCGCACCCTTCT
GA
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protein sequence of g42.t2

>g42.t2-PA ID=g42.t2-PA|Name=g42.t2|organism=Venturia canescens|type=polypeptide|length=633bp
MRLKGKNNTKSFHSVYRVLSRICRQLDGFMADGSVPPLKSGHDTQTMGFA
TQQMREASDVSSTVYAVGHYAPKVLRNLNAQRLKNQFSDVGIVAGDSIIR
AHRSVLAASSAYFNAMFTGGLVEEQQELVEIHSVSPNILSILIDFIYTGN
VDITQDNVQELFAAADMLELDEVVSGCIDYLRQQLHYSNALGIYRFAEAH
NRLDLLETALHFIEVNFPQVSQEEEFLDLPKDYLIHFLSSEYIHVDTEFQ
VFQAAYNWIVHDIPARRCYVFEILGHIRLRLCSLARLDSVILECKDASLI
VALRSIQKDLVSNKGCLVSLRAEPRLCAKKNILVIGGSKREHTADSWARD
AESIYETIEKYDTFTGEWSEVAPIGIGRILPGVAVLDGKVYVVGGELESC
IIANGECYDPRDNVWTSIACMTEPRCEFGLCALDNALYAFGGWVGEDIGG
SIETYDPLTNKWELHGQLPEPRFSMGVVAYEGLIYVIGGCTHDSRHRQDT
MTYNPVTREWNSLAPMLTPRSQMGITILDGYLYVVGGTNKNQEFRTTVER
YSFEKNKWTAVAPMSIGRSYPAVAAADGRLYVIGGDQSQDINFYRTQITI
STVECYDPNSNKWEECTSLPTSRGEAVAVIAPF
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mRNA from alignment at scaffold_1:349961..352790+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>g42.t2 ID=g42.t2|Name=g42.t2|organism=Venturia canescens|type=mRNA|length=2830bp|location=Sequence derived from alignment at scaffold_1:349961..352790+ (Venturia canescens)
ATGCGCTTAAAAGGAAAGAACAACACTAAGTCTTTCCACAGCGTTTATAG AGTGCTGTCCCGTATATGTCGTGAGTATCAAACGAAGTTTATTTGCTCGT TATTAATGACAGAATTATGATTATTGTGAAAGCCCTTTTGCTGAAACATT CATCAATAAATTCATAAATGGAATAAGTATCAATTAATAATAATGGATTC TTAAAAAAGATGAAAAAGAGAAATTGCACAAAAAAAAAATGAGAAACGAA AATTCATAAATTTTTTACTAAAACATAACAAAATTTAAATATTTTCAGAA CCTTATTCTAAGATTCGTATCCTCTGAATTTCTTTTTCTGTTTAGAAAAA ACAAAATATCCGTAAACATAAAACGATAAGAAAATTGTACATGAATAATT TCTGGCAAAAAAATGTAAAAAATGTTCATGTAGAAAATGATGAGACAGAA AGTGGAGTTAAAAAGAAAAAAATACTTTGCTTAGAATGAACAGATTAAAA TTTACAGGAGCTGTGGACAAAGGTCAACTCGATGGTTTCATGGCTGATGG CTCAGTGCCGCCACTGAAGAGTGGTCACGATACTCAAACAATGGGTTTTG CTACGCAACAGATGCGCGAGGCATCGGACGTTTCAAGCACAGTTTATGCA GTCGGCCATTATGCACCAAAAGTTTTGAGAAACTTGAATGCTCAACGGCT CAAGAATCAGTTCAGCGATGTTGGCATTGTTGCTGGGGACAGTATAATTA GAGCGCATAGATCAGTTCTGGCAGCTAGTAGCGCTTATTTTAATGCCATG TTCACTGGCGGTTTGGTAGAAGAGCAACAAGAACTCGTGGAAATTCATTC CGTCTCTCCCAATATTCTATCCATCCTTATAGATTTTATTTATACTGGCA ATGTCGACATCACTCAAGATAATGTACAAGAATTATTTGCCGCCGCAGAT ATGCTGGAACTTGACGAAGTTGTCTCTGGCTGCATAGATTATTTGCGTCA ACAATTACATTACTCCAATGCACTTGGAATTTATAGGTATAGAAAATACA CTTCTTCCTTTTTTTCGAATCTTGTTTAGATTGTCCATTTTTTAAAAATG TTACCATCCTTTTTTCTAGATTTGCAGAAGCACACAACAGACTAGATCTA CTGGAGACTGCCCTACACTTTATTGAAGTCAATTTTCCTCAAGTTTCACA GGAGGAGGAGTTCCTTGATCTGCCAAAGGATTATCTCATTCATTTTCTCA GTAGCGAGTACATACACGTTGACACTGAATTTCAGGTAATAAGAACATAC TCTTTGTACAGCTCATTAACAATGTTCTTGAGTCATACTCAACTCGCTAC ATTTATTCATCCCTGCAAAGAGAAATTTTTTTCTCCTTTCGTTATTAGGT CTTCCAAGCAGCGTACAACTGGATCGTCCACGACATTCCAGCGCGTCGTT GCTACGTATTCGAGATTCTCGGTCACATAAGACTGCGACTGTGCTCATTG GCACGTCTCGACAGTGTGATCCTTGAATGCAAGGATGCAAGTTTGATCGT AGCGTTGCGATCGATACAAAAGGATTTGGTTTCGAACAAAGGCTGTCTGG TGTCTCTGCGAGCTGAGCCCAGGCTCTGCGCGAAGAAAAATATTCTCGTT ATCGGTGGTTCCAAACGGGAACATACGGCTGACAGTTGGGCAAGAGATGC TGAGAGTATTTATGAGACTATTGAAAAATACGACACGTTTACGGGGTAAA AGAGAAAACGTTTCATTAAAAAAATGTGAAAATAAATTTATCGTGAATAT CGAATCGTGTTTGATTCGAGGATTGATATTAAATTGGAATGTTTTTTCAG AGAATGGAGCGAAGTCGCACCAATAGGAATCGGCAGGATTCTCCCAGGAG TCGCCGTTCTTGATGGCAAAGTTTACGTGGTCGGTGGTGAGCTGGAGTCG TGTATAATAGCAAACGGGGAATGTTACGATCCCCGAGACAACGTTTGGAC GTCAATTGCGTGTATGACAGAGCCCAGATGCGAATTTGGGCTTTGTGCGC TCGATAACGCGCTTTACGCTTTTGGTGGATGGGTGGGTGAGGACATTGGC GGCTCAATTGAGACTTATGACCCTTTGACGAATAAATGGGAACTGCATGG TCAACTGCCCGAGCCTCGATTTAGCATGGGCGTCGTGGCTTACGAGGGTA AAGTAACAAAATCGAATTCAGCCTCGATTCAACGTACAACAAAGTTTAAT TACTCATTAAAATCAATATTTCAGGATTGATTTACGTAATCGGCGGCTGC ACCCACGACAGCAGGCATCGACAAGACACGATGACCTACAACCCCGTTAC GCGCGAGTGGAACAGTCTCGCGCCCATGCTCACACCTCGATCTCAAATGG GAATAACTATTTTGGACGGTTATCTTTACGTAGTTGGTGGTACGAACAAG AATCAAGAGTTTCGCACCACCGTCGAGAGATATTCTTTCGAAAAGGTACA TTTATTTTGGTGTAATGAAAAAATTGCAAAAACTGAAAATGTAATTAAAG AAATGAATTGGTAGAATTAATATTTTTTTTTTCTGTCAAATAGAATAAAT GGACGGCTGTAGCTCCGATGAGCATCGGGAGATCTTATCCAGCGGTGGCA GCGGCCGACGGTCGTTTGTACGTGATCGGTGGCGATCAATCACAGGATAT TAATTTCTATCGTACCCAAATAACGATATCAACGGTGGAATGTTACGACC CAAATTCCAACAAGTGGGAAGAATGCACATCGTTGCCAACGAGTCGGGGC GAGGCTGTCGCAGTAATCGCACCCTTCTGA
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Coding sequence (CDS) from alignment at scaffold_1:349961..352790+

>g42.t2 ID=g42.t2|Name=g42.t2|organism=Venturia canescens|type=CDS|length=1902bp|location=Sequence derived from alignment at scaffold_1:349961..352790+ (Venturia canescens)
ATGCGCTTAAAAGGAAAGAACAACACTAAGTCTTTCCACAGCGTTTATAG
AGTGCTGTCCCGTATATGTCGTCAACTCGATGGTTTCATGGCTGATGGCT
CAGTGCCGCCACTGAAGAGTGGTCACGATACTCAAACAATGGGTTTTGCT
ACGCAACAGATGCGCGAGGCATCGGACGTTTCAAGCACAGTTTATGCAGT
CGGCCATTATGCACCAAAAGTTTTGAGAAACTTGAATGCTCAACGGCTCA
AGAATCAGTTCAGCGATGTTGGCATTGTTGCTGGGGACAGTATAATTAGA
GCGCATAGATCAGTTCTGGCAGCTAGTAGCGCTTATTTTAATGCCATGTT
CACTGGCGGTTTGGTAGAAGAGCAACAAGAACTCGTGGAAATTCATTCCG
TCTCTCCCAATATTCTATCCATCCTTATAGATTTTATTTATACTGGCAAT
GTCGACATCACTCAAGATAATGTACAAGAATTATTTGCCGCCGCAGATAT
GCTGGAACTTGACGAAGTTGTCTCTGGCTGCATAGATTATTTGCGTCAAC
AATTACATTACTCCAATGCACTTGGAATTTATAGATTTGCAGAAGCACAC
AACAGACTAGATCTACTGGAGACTGCCCTACACTTTATTGAAGTCAATTT
TCCTCAAGTTTCACAGGAGGAGGAGTTCCTTGATCTGCCAAAGGATTATC
TCATTCATTTTCTCAGTAGCGAGTACATACACGTTGACACTGAATTTCAG
GTCTTCCAAGCAGCGTACAACTGGATCGTCCACGACATTCCAGCGCGTCG
TTGCTACGTATTCGAGATTCTCGGTCACATAAGACTGCGACTGTGCTCAT
TGGCACGTCTCGACAGTGTGATCCTTGAATGCAAGGATGCAAGTTTGATC
GTAGCGTTGCGATCGATACAAAAGGATTTGGTTTCGAACAAAGGCTGTCT
GGTGTCTCTGCGAGCTGAGCCCAGGCTCTGCGCGAAGAAAAATATTCTCG
TTATCGGTGGTTCCAAACGGGAACATACGGCTGACAGTTGGGCAAGAGAT
GCTGAGAGTATTTATGAGACTATTGAAAAATACGACACGTTTACGGGAGA
ATGGAGCGAAGTCGCACCAATAGGAATCGGCAGGATTCTCCCAGGAGTCG
CCGTTCTTGATGGCAAAGTTTACGTGGTCGGTGGTGAGCTGGAGTCGTGT
ATAATAGCAAACGGGGAATGTTACGATCCCCGAGACAACGTTTGGACGTC
AATTGCGTGTATGACAGAGCCCAGATGCGAATTTGGGCTTTGTGCGCTCG
ATAACGCGCTTTACGCTTTTGGTGGATGGGTGGGTGAGGACATTGGCGGC
TCAATTGAGACTTATGACCCTTTGACGAATAAATGGGAACTGCATGGTCA
ACTGCCCGAGCCTCGATTTAGCATGGGCGTCGTGGCTTACGAGGGATTGA
TTTACGTAATCGGCGGCTGCACCCACGACAGCAGGCATCGACAAGACACG
ATGACCTACAACCCCGTTACGCGCGAGTGGAACAGTCTCGCGCCCATGCT
CACACCTCGATCTCAAATGGGAATAACTATTTTGGACGGTTATCTTTACG
TAGTTGGTGGTACGAACAAGAATCAAGAGTTTCGCACCACCGTCGAGAGA
TATTCTTTCGAAAAGAATAAATGGACGGCTGTAGCTCCGATGAGCATCGG
GAGATCTTATCCAGCGGTGGCAGCGGCCGACGGTCGTTTGTACGTGATCG
GTGGCGATCAATCACAGGATATTAATTTCTATCGTACCCAAATAACGATA
TCAACGGTGGAATGTTACGACCCAAATTCCAACAAGTGGGAAGAATGCAC
ATCGTTGCCAACGAGTCGGGGCGAGGCTGTCGCAGTAATCGCACCCTTCT
GA
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