AE3000774-RA (mRNA) Aphidius ervi

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameAE3000774-RA
Unique NameAE3000774-RA
TypemRNA
OrganismAphidius ervi (aervi)
Sequence length168
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold7contigscaffold7:200625..200879 -    View in Apollo
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly (v3.0) and Annotation (v3.0) of Aphidius ervi2017-01-26
Properties
Property NameValue
AED0.48
QI0|0|0|1|0|0|2|0|55
eAED0.48
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
AE3000774AE3000774Aphidius ervigenescaffold7 200625..200879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
AE3000774-RAAE3000774-PAAphidius ervipolypeptidescaffold7 200625..200879 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
AE3000774-RA:cdsAE3000774-RA:cdsAphidius erviCDSscaffold7 200625..200745 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
AE3000774-RA:exon:266AE3000774-RA:exon:266Aphidius erviexonscaffold7 200833..200879 -
AE3000774-RA:exon:267AE3000774-RA:exon:267Aphidius erviexonscaffold7 200625..200745 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>AE3000774-RA ID=AE3000774-RA|Name=AE3000774-RA|organism=Aphidius ervi|type=mRNA|length=168bp
AAGATAGAAGAGGGCTGTTTTAACAGGATAATAGAACAAGAAAAGAGAGG
GCTGTTTTATCAGGGTTATAGAACAGGCAAAGAGGTATTTTTTGAGTCAA
CAAGTTCAGCGCCATCTATTTATTTTTTTGGGAACTATAGGGTAAACACA
TTAAAAAATCATAGATAG
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spliced messenger RNA

>AE3000774-RA ID=AE3000774-RA|Name=AE3000774-RA|organism=Aphidius ervi|type=mRNA|length=168bp|location=Sequence derived from alignment at scaffold7:200625..200879- (Aphidius ervi)|Notes=Excludes all bases but those of type(s): exon.  
AAGATAGAAGAGGGCTGTTTTAACAGGATAATAGAACAAGAAAAGAGAGG
GCTGTTTTATCAGGGTTATAGAACAGGCAAAGAGGTATTTTTTGAGTCAA
CAAGTTCAGCGCCATCTATTTATTTTTTTGGGAACTATAGGGTAAACACA
TTAAAAAATCATAGATAG
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protein sequence of AE3000774-RA

>AE3000774-PA ID=AE3000774-PA|Name=AE3000774-RA|organism=Aphidius ervi|type=polypeptide|length=55bp
KIEEGCFNRIIEQEKRGLFYQGYRTGKEVFFESTSSAPSIYFFGNYRVNT
LKNHR
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mRNA from alignment at scaffold7:200625..200879-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>AE3000774-RA ID=AE3000774-RA|Name=AE3000774-RA|organism=Aphidius ervi|type=mRNA|length=255bp|location=Sequence derived from alignment at scaffold7:200625..200879- (Aphidius ervi)
AAGATAGAAGAGGGCTGTTTTAACAGGATAATAGAACAAGAAAAGAGGTA
TTTTTTGAGTTAACTAGTTCAGCGCCATCTATTGTTTTTTTTAGGAACTA
TAGGGTAAAAACATTAAAATATCATAGATGGAAGAGGGCTGTTTTATCAG
GGTTATAGAACAGGCAAAGAGGTATTTTTTGAGTCAACAAGTTCAGCGCC
ATCTATTTATTTTTTTGGGAACTATAGGGTAAACACATTAAAAAATCATA
GATAG
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Coding sequence (CDS) from alignment at scaffold7:200625..200879-

>AE3000774-RA ID=AE3000774-RA|Name=AE3000774-RA|organism=Aphidius ervi|type=CDS|length=168bp|location=Sequence derived from alignment at scaffold7:200625..200879- (Aphidius ervi)
AAGATAGAAGAGGGCTGTTTTAACAGGATAATAGAACAAGAAAAGAGAGG
GCTGTTTTATCAGGGTTATAGAACAGGCAAAGAGGTATTTTTTGAGTCAA
CAAGTTCAGCGCCATCTATTTATTTTTTTGGGAACTATAGGGTAAACACA
TTAAAAAATCATAGATAG
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Synonyms
The feature 'AE3000774-RA' has the following synonyms
Synonym
maker-scaffold7-exonerate_protein2genome-gene-2.137-mRNA-1