AE3000784-RA (mRNA) Aphidius ervi

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	AE3000784-RA
Unique Name	AE3000784-RA
Type	mRNA
Organism	Aphidius ervi (aervi)
Sequence length	1326

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold7	contig	scaffold7:272097..273920 - View in Apollo

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Whole Genome Assembly (v3.0) and Annotation (v3.0) of Aphidius ervi	2017-01-26

Properties


Property Name	Value
AED	0.17
QI	0\|0\|0.5\|1\|0\|0\|2\|255\|356
eAED	0.17

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
AE3000784	AE3000784	Aphidius ervi	gene	scaffold7 272097..273920 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
AE3000784-RA	AE3000784-PA	Aphidius ervi	polypeptide	scaffold7 272352..273920 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
AE3000784-RA:three_prime_utr	AE3000784-RA:three_prime_utr	Aphidius ervi	three_prime_UTR	scaffold7 272097..272351 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
AE3000784-RA:cds	AE3000784-RA:cds	Aphidius ervi	CDS	scaffold7 272352..273414 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
AE3000784-RA:exon:250	AE3000784-RA:exon:250	Aphidius ervi	exon	scaffold7 273913..273920 -
AE3000784-RA:exon:251	AE3000784-RA:exon:251	Aphidius ervi	exon	scaffold7 272097..273414 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at scaffold7:272097..273920-
coding sequence from alignment at scaffold7:272097..273920-

mRNA sequence

>AE3000784-RA ID=AE3000784-RA|Name=AE3000784-RA|organism=Aphidius ervi|type=mRNA|length=1326bp
ATGTTATTGAAAATAATAATAAAAATGGCACAAGAATCAAGTAGTAATTT
AAGTCGTGAAGATTTTGATGCTGGACCAACAAGTTATGATAAAATTGAAG
ATAATCTTTATCTTGGTAATTTAACAGCAGCAACAGATGTTAAATGGTTA
AGAAAAAATAAAATAAGTCATATATTAACTGTTGATTCATGTCCATTACC
AAGACAAATACAAGAATTACCAGATATAACATTAAAATATATACAAATAA
CTGATATGCCACGTGAAGATATATTAACATATTTTGAAAATTCATATGAA
TTTATTGATCATGCTATTAAATCAAATGGTAATGTTCTTGTACATTGTTA
TTTTGGTGTATCAAGATCAGCAACACTTGTTATTGCATATATTATGAAAA
AATATGAATTAACATTTATTGATGCTTATGATATTGTTAAAAATAAAAGA
AGATTTGTTAGTCCAAATCCAGGTTTTTTAGCTCAGCTAAAATTATATGA
AGATATGGGCTTTACAATTGATACACGTAATATAAAATTTAAATTATATC
GTTTACAAATTGCTGCTGATAAAGTACGTAAAGCAAAAATATTACCATCA
AATTATATTGATTTAATAAAACCAGATCCAGCACTTGAAACAGTACATCC
AGAACCAACTGTTTATCGTTGTGCTAAATGTCGTAGAATTGTTGCATCAG
CAAGTAATATACTTCCTCATTCACCACATGAACGACAAATATGGCGACAT
GTTAGTACAAAAAAAAATAAAAAAAATCAAGATACTGATAATATTATTGT
TAGAACAATCAATGATAATACGGACAATAATAAACAATCTGATATTTGTA
AAAAAATATATTTTATTGAGCCATTAGCATGGATGCCAGATATACTTAAT
CATGTTGATGGTAAATTAAATTGTCCAAAATGTGAAGCAAAATTAGGTGC
ATTTAGTTGGATATCTGGTTGTCAGTGTCCTTGTGGTAGTAAAATTGCAC
CAGCATTTTATCTTATACCATCAAAAGTTGATTGGAGTAATGCTGTGCAA
AATGTTCTTGTTACTGTTTAAAAAAAAAAACAAAAACACAAGCTGATATA
TTTTTTTTGAACAAATATATTTTCAAAGTTTCTATAAAAAAGCCTAAAGT
ATCTAAATAAATAGTAAAAAAAAAAAAATCATATAAGCAATTATTATTGT
CAAATGTAGAGAAAAATATTGACAAGACTGGAAATAATATTATCTATTTT
ATGTGCCAATTTTATCTTCCTATGAATAATATTTAAAAAATGTTAAATAG
TATTTTTCGAATCGATTGTTGTCGAT

spliced messenger RNA

>AE3000784-RA ID=AE3000784-RA|Name=AE3000784-RA|organism=Aphidius ervi|type=mRNA|length=1326bp|location=Sequence derived from alignment at scaffold7:272097..273920- (Aphidius ervi)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTATTGAAAATAATAATAAAAATGGCACAAGAATCAAGTAGTAATTT
AAGTCGTGAAGATTTTGATGCTGGACCAACAAGTTATGATAAAATTGAAG
ATAATCTTTATCTTGGTAATTTAACAGCAGCAACAGATGTTAAATGGTTA
AGAAAAAATAAAATAAGTCATATATTAACTGTTGATTCATGTCCATTACC
AAGACAAATACAAGAATTACCAGATATAACATTAAAATATATACAAATAA
CTGATATGCCACGTGAAGATATATTAACATATTTTGAAAATTCATATGAA
TTTATTGATCATGCTATTAAATCAAATGGTAATGTTCTTGTACATTGTTA
TTTTGGTGTATCAAGATCAGCAACACTTGTTATTGCATATATTATGAAAA
AATATGAATTAACATTTATTGATGCTTATGATATTGTTAAAAATAAAAGA
AGATTTGTTAGTCCAAATCCAGGTTTTTTAGCTCAGCTAAAATTATATGA
AGATATGGGCTTTACAATTGATACACGTAATATAAAATTTAAATTATATC
GTTTACAAATTGCTGCTGATAAAGTACGTAAAGCAAAAATATTACCATCA
AATTATATTGATTTAATAAAACCAGATCCAGCACTTGAAACAGTACATCC
AGAACCAACTGTTTATCGTTGTGCTAAATGTCGTAGAATTGTTGCATCAG
CAAGTAATATACTTCCTCATTCACCACATGAACGACAAATATGGCGACAT
GTTAGTACAAAAAAAAATAAAAAAAATCAAGATACTGATAATATTATTGT
TAGAACAATCAATGATAATACGGACAATAATAAACAATCTGATATTTGTA
AAAAAATATATTTTATTGAGCCATTAGCATGGATGCCAGATATACTTAAT
CATGTTGATGGTAAATTAAATTGTCCAAAATGTGAAGCAAAATTAGGTGC
ATTTAGTTGGATATCTGGTTGTCAGTGTCCTTGTGGTAGTAAAATTGCAC
CAGCATTTTATCTTATACCATCAAAAGTTGATTGGAGTAATGCTGTGCAA
AATGTTCTTGTTACTGTTTAAAAAAAAAAACAAAAACACAAGCTGATATA
TTTTTTTTGAACAAATATATTTTCAAAGTTTCTATAAAAAAGCCTAAAGT
ATCTAAATAAATAGTAAAAAAAAAAAAATCATATAAGCAATTATTATTGT
CAAATGTAGAGAAAAATATTGACAAGACTGGAAATAATATTATCTATTTT
ATGTGCCAATTTTATCTTCCTATGAATAATATTTAAAAAATGTTAAATAG
TATTTTTCGAATCGATTGTTGTCGAT

protein sequence of AE3000784-RA

>AE3000784-PA ID=AE3000784-PA|Name=AE3000784-RA|organism=Aphidius ervi|type=polypeptide|length=356bp
MLLKIIIKMAQESSSNLSREDFDAGPTSYDKIEDNLYLGNLTAATDVKWL
RKNKISHILTVDSCPLPRQIQELPDITLKYIQITDMPREDILTYFENSYE
FIDHAIKSNGNVLVHCYFGVSRSATLVIAYIMKKYELTFIDAYDIVKNKR
RFVSPNPGFLAQLKLYEDMGFTIDTRNIKFKLYRLQIAADKVRKAKILPS
NYIDLIKPDPALETVHPEPTVYRCAKCRRIVASASNILPHSPHERQIWRH
VSTKKNKKNQDTDNIIVRTINDNTDNNKQSDICKKIYFIEPLAWMPDILN
HVDGKLNCPKCEAKLGAFSWISGCQCPCGSKIAPAFYLIPSKVDWSNAVQ
NVLVTV

mRNA from alignment at scaffold7:272097..273920-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>AE3000784-RA ID=AE3000784-RA|Name=AE3000784-RA|organism=Aphidius ervi|type=mRNA|length=1824bp|location=Sequence derived from alignment at scaffold7:272097..273920- (Aphidius ervi)
ATGTTATTGTAAATAAACCACACAAAACATGTGTATTAATCTATTGACGG
TTTGCGTTAAATTGTTTGTGTCAAAATAATTTATTTATTTAAAAATTATT
GAGTTGAATTTAATTGTAATTAACAATTAAAATTAGTTTGACATCTTGAA
GTAGTTTTTTTATTTTTTTTTCACATCAATACTCTCATTGGTGATCAATA
AATCCGGGCTAAAAAGTCAAGTTGTATATATATTTTTTTTCTCATTGACG
TACACGTGAATAAAGGTGCAAAAATAAAAATAAAAAAAACCATCAAAGCT
TGAAAGGTAGAAAAGTAAAATCAATGAAGCTCATCTCTTAAATACGTCAA
ACGTTTATTGTCATTTTGTTGAAGAACATCGTTGTAATTCTATTAAATAA
ATAAATAAATTCGTCAACAAAAAAAAAGGTAAATAAAATTATTTATAATT
AATTAATGTTTAATTTTAAATAATTTGAATTATCAAAAAATTAAATTATG
TTTTAGGAAAATAATAATAAAAATGGCACAAGAATCAAGTAGTAATTTAA
GTCGTGAAGATTTTGATGCTGGACCAACAAGTTATGATAAAATTGAAGAT
AATCTTTATCTTGGTAATTTAACAGCAGCAACAGATGTTAAATGGTTAAG
AAAAAATAAAATAAGTCATATATTAACTGTTGATTCATGTCCATTACCAA
GACAAATACAAGAATTACCAGATATAACATTAAAATATATACAAATAACT
GATATGCCACGTGAAGATATATTAACATATTTTGAAAATTCATATGAATT
TATTGATCATGCTATTAAATCAAATGGTAATGTTCTTGTACATTGTTATT
TTGGTGTATCAAGATCAGCAACACTTGTTATTGCATATATTATGAAAAAA
TATGAATTAACATTTATTGATGCTTATGATATTGTTAAAAATAAAAGAAG
ATTTGTTAGTCCAAATCCAGGTTTTTTAGCTCAGCTAAAATTATATGAAG
ATATGGGCTTTACAATTGATACACGTAATATAAAATTTAAATTATATCGT
TTACAAATTGCTGCTGATAAAGTACGTAAAGCAAAAATATTACCATCAAA
TTATATTGATTTAATAAAACCAGATCCAGCACTTGAAACAGTACATCCAG
AACCAACTGTTTATCGTTGTGCTAAATGTCGTAGAATTGTTGCATCAGCA
AGTAATATACTTCCTCATTCACCACATGAACGACAAATATGGCGACATGT
TAGTACAAAAAAAAATAAAAAAAATCAAGATACTGATAATATTATTGTTA
GAACAATCAATGATAATACGGACAATAATAAACAATCTGATATTTGTAAA
AAAATATATTTTATTGAGCCATTAGCATGGATGCCAGATATACTTAATCA
TGTTGATGGTAAATTAAATTGTCCAAAATGTGAAGCAAAATTAGGTGCAT
TTAGTTGGATATCTGGTTGTCAGTGTCCTTGTGGTAGTAAAATTGCACCA
GCATTTTATCTTATACCATCAAAAGTTGATTGGAGTAATGCTGTGCAAAA
TGTTCTTGTTACTGTTTAAAAAAAAAAACAAAAACACAAGCTGATATATT
TTTTTTGAACAAATATATTTTCAAAGTTTCTATAAAAAAGCCTAAAGTAT
CTAAATAAATAGTAAAAAAAAAAAAATCATATAAGCAATTATTATTGTCA
AATGTAGAGAAAAATATTGACAAGACTGGAAATAATATTATCTATTTTAT
GTGCCAATTTTATCTTCCTATGAATAATATTTAAAAAATGTTAAATAGTA
TTTTTCGAATCGATTGTTGTCGAT

Coding sequence (CDS) from alignment at scaffold7:272097..273920-

>AE3000784-RA ID=AE3000784-RA|Name=AE3000784-RA|organism=Aphidius ervi|type=CDS|length=1071bp|location=Sequence derived from alignment at scaffold7:272097..273920- (Aphidius ervi)
ATGTTATTGAAAATAATAATAAAAATGGCACAAGAATCAAGTAGTAATTT
AAGTCGTGAAGATTTTGATGCTGGACCAACAAGTTATGATAAAATTGAAG
ATAATCTTTATCTTGGTAATTTAACAGCAGCAACAGATGTTAAATGGTTA
AGAAAAAATAAAATAAGTCATATATTAACTGTTGATTCATGTCCATTACC
AAGACAAATACAAGAATTACCAGATATAACATTAAAATATATACAAATAA
CTGATATGCCACGTGAAGATATATTAACATATTTTGAAAATTCATATGAA
TTTATTGATCATGCTATTAAATCAAATGGTAATGTTCTTGTACATTGTTA
TTTTGGTGTATCAAGATCAGCAACACTTGTTATTGCATATATTATGAAAA
AATATGAATTAACATTTATTGATGCTTATGATATTGTTAAAAATAAAAGA
AGATTTGTTAGTCCAAATCCAGGTTTTTTAGCTCAGCTAAAATTATATGA
AGATATGGGCTTTACAATTGATACACGTAATATAAAATTTAAATTATATC
GTTTACAAATTGCTGCTGATAAAGTACGTAAAGCAAAAATATTACCATCA
AATTATATTGATTTAATAAAACCAGATCCAGCACTTGAAACAGTACATCC
AGAACCAACTGTTTATCGTTGTGCTAAATGTCGTAGAATTGTTGCATCAG
CAAGTAATATACTTCCTCATTCACCACATGAACGACAAATATGGCGACAT
GTTAGTACAAAAAAAAATAAAAAAAATCAAGATACTGATAATATTATTGT
TAGAACAATCAATGATAATACGGACAATAATAAACAATCTGATATTTGTA
AAAAAATATATTTTATTGAGCCATTAGCATGGATGCCAGATATACTTAAT
CATGTTGATGGTAAATTAAATTGTCCAAAATGTGAAGCAAAATTAGGTGC
ATTTAGTTGGATATCTGGTTGTCAGTGTCCTTGTGGTAGTAAAATTGCAC
CAGCATTTTATCTTATACCATCAAAAGTTGATTGGAGTAATGCTGTGCAA
AATGTTCTTGTTACTGTTTAA

Synonyms

The feature 'AE3000784-RA' has the following synonyms


Synonym
maker-scaffold7-snap-gene-2.211-mRNA-1