Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Analysis Name | Date Performed |
Campoletis sonorensis OGS1.1 | 2019-03-15 |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Species | Type | Position |
gene.scaffold_10.g59.t1 | gene.scaffold_10.g59.t1 | Campoletis sonorensis | gene | scaffold_10 649445..652741 - |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
gene.scaffold_10.g59.t1-RA-exon | gene.scaffold_10.g59.t1-RA-exon-5 | Campoletis sonorensis | exon | scaffold_10 649445..649783 - |
gene.scaffold_10.g59.t1-RA-exon | gene.scaffold_10.g59.t1-RA-exon-4 | Campoletis sonorensis | exon | scaffold_10 650207..650457 - |
gene.scaffold_10.g59.t1-RA-exon | gene.scaffold_10.g59.t1-RA-exon-3 | Campoletis sonorensis | exon | scaffold_10 650536..650800 - |
gene.scaffold_10.g59.t1-RA-exon | gene.scaffold_10.g59.t1-RA-exon-2 | Campoletis sonorensis | exon | scaffold_10 651153..651568 - |
gene.scaffold_10.g59.t1-RA-exon | gene.scaffold_10.g59.t1-RA-exon-1 | Campoletis sonorensis | exon | scaffold_10 652516..652741 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
gene.scaffold_10.g59.t1-RA-CDS | gene.scaffold_10.g59.t1-RA-CDS-5 | Campoletis sonorensis | CDS | scaffold_10 649445..649783 - |
gene.scaffold_10.g59.t1-RA-CDS | gene.scaffold_10.g59.t1-RA-CDS-4 | Campoletis sonorensis | CDS | scaffold_10 650207..650457 - |
gene.scaffold_10.g59.t1-RA-CDS | gene.scaffold_10.g59.t1-RA-CDS-3 | Campoletis sonorensis | CDS | scaffold_10 650536..650800 - |
gene.scaffold_10.g59.t1-RA-CDS | gene.scaffold_10.g59.t1-RA-CDS-2 | Campoletis sonorensis | CDS | scaffold_10 651153..651568 - |
gene.scaffold_10.g59.t1-RA-CDS | gene.scaffold_10.g59.t1-RA-CDS-1 | Campoletis sonorensis | CDS | scaffold_10 652516..652741 - |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >gene.scaffold_10.g59.t1-RA ID=gene.scaffold_10.g59.t1-RA|Name=gene.scaffold_10.g59.t1-RA|organism=Campoletis sonorensis|type=mRNA|length=1497bp|location=Sequence derived from alignment at scaffold_10:649445..652741- (Campoletis sonorensis)|Notes=Excludes all bases but those of type(s): exon.
ATGAATACCAGGGTTAAACCGTGCGACGATTTTTACGAGTTTGTTTGTGG AAACTATGCGCAAACAGCGACAATACCCGATGGTAAGCCAATGATTATTC CGCGTTACGAAAAGGAACAAGAAACACTATCGCGTTTGCAAAGGATCATA GAAGACATTGATGAGTCAATAGCACCCGAGAAATTTTCGGAGCTTAAAAA AATGTACAAAGAATGCATAGCTAACGAACTCGATCGAAAGTTTCCAAGTT GGGAATTGAAACAACAAATGTTTGAAATAAACGATTCCGATATAATCCAA ATACCGTGGGATCTAAAAGCTCTTGAGACTTTGCGAGAATGGATATCGAA AAAGCAATCAACGAGGGACTTCGATTATTGGGTAACATGGCGTTTCACTG ACTACTTGAACGACGAACTGGGCTCATTTGTTTCCCACGAAAAACAGCTG TTGAAAGACGCTATTTCCGGTACTCGCACAACGAATAGTGTGAAAGAAAA GTGCGTTGAACAAGTTCGAAAAAACTCACCATTTTTACTAAATGCTTTGT ATTATGGGCAATACTTGGACCACAATCTCATTAGAGGTTTCAACGAAATT TTGGAAAATGTTCAACAACAACATGTGATATTGATAAACGAGGCTGAATG GTTGGATGGCAAAATAAAAAGGTATGCTTTCCAAAAAGTCAAGGAAATAA GCAACAACGTTGGTATTTTCGAGAAATTCATGCTCCATAAAAATTCCAAA CGGTCTGATAATGATCCTAAATTATCAGACGGTTTTTTAGCAGAAAATAG AGCAAATCTCACTAAAATCTTGATTCATTTGAATGACTCGTCGAGCGAAG AGAGATATAACTTTATAAAAGGCCATGCAAAATACAGTTACGAATCACAA CGTATTAGCCTTGGTGGTGTGACATTTACAGACGCTTATTACGATGTCGA TCGACCAGACGCTCTAAATTACGGGGCTTTGGGGTACGTGCTTGGTACCG AACTGGCCCACAGTCTTGATAACAAGGGAAGACATTATCTTAAAAATGGT AACGTCGAAATATGGTGGGATTCCAAAAATGATGAAAGCTTTGTTAATCG CACAAGGTGTTTTGTTAAAAAGTATAGAAAATACGTCTTGGATGAGTTTG GAATCCATATTAATAGTTCAAAGCCTCGGGATGAAGATATTGCCGATAAC CTGGGTGCCAAGGCGGCGTATTTTGCATACTGCAAAAGTGCATGGCTGAA AAATCGCGAAAAAACATTGCCTGGTCTGGACTACTCTCCGAAACAACTGT TTTGGATCAGTTTAGCCACAACTCAATGTGCAAGATACCGGCCAGAATAC TCGATGTACGGGGCTGAAGCGGACGAGCACACATTGTCGAAAGTTCGAGT CAACGTGCCGCTGTCAAATCTTAAAGAATTCGCAAATGATTTCAAATGTC GCCCGAATTCGAAGATGAATCCTGCGACAAAGTGTTCCATATGGTGA back to topprotein sequence of gene.scaffold_10.g59.t1-RA >gene.scaffold_10.g59.t1-PA ID=gene.scaffold_10.g59.t1-PA|Name=gene.scaffold_10.g59.t1-RA|organism=Campoletis sonorensis|type=polypeptide|length=498bp
MNTRVKPCDDFYEFVCGNYAQTATIPDGKPMIIPRYEKEQETLSRLQRII EDIDESIAPEKFSELKKMYKECIANELDRKFPSWELKQQMFEINDSDIIQ IPWDLKALETLREWISKKQSTRDFDYWVTWRFTDYLNDELGSFVSHEKQL LKDAISGTRTTNSVKEKCVEQVRKNSPFLLNALYYGQYLDHNLIRGFNEI LENVQQQHVILINEAEWLDGKIKRYAFQKVKEISNNVGIFEKFMLHKNSK RSDNDPKLSDGFLAENRANLTKILIHLNDSSSEERYNFIKGHAKYSYESQ RISLGGVTFTDAYYDVDRPDALNYGALGYVLGTELAHSLDNKGRHYLKNG NVEIWWDSKNDESFVNRTRCFVKKYRKYVLDEFGIHINSSKPRDEDIADN LGAKAAYFAYCKSAWLKNREKTLPGLDYSPKQLFWISLATTQCARYRPEY SMYGAEADEHTLSKVRVNVPLSNLKEFANDFKCRPNSKMNPATKCSIW back to topmRNA from alignment at scaffold_10:649445..652741- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >gene.scaffold_10.g59.t1-RA ID=gene.scaffold_10.g59.t1-RA|Name=gene.scaffold_10.g59.t1-RA|organism=Campoletis sonorensis|type=mRNA|length=3297bp|location=Sequence derived from alignment at scaffold_10:649445..652741- (Campoletis sonorensis) ATGAATACCAGGGTTAAACCGTGCGACGATTTTTACGAGTTTGTTTGTGG
AAACTATGCGCAAACAGCGACAATACCCGATGGTAAGCCAATGATTATTC
CGCGTTACGAAAAGGAACAAGAAACACTATCGCGTTTGCAAAGGATCATA
GAAGACATTGATGAGTCAATAGCACCCGAGAAATTTTCGGAGCTTAAAAA
AATGTACAAAGAATGCATAGCTAACGGTAAGTTTTCGTCGTTATTTTAAA
GTATTATCATTTTTTTGTTCGTTTGTTAATAGAGACTGAAAAAAAATGAA
CCATCTTTTATTTGGCTCTGTTATTTGTCCAATTCGATCTTTTATTTGTC
CAAACTTCAATCAAGTCAAAAACTATCCTGCATTTTTACCAAGACAAACA
ATCATTTTATTTGGAGTTGTTAGAAAAAAAAGAGGGAACAAAAGTGCCCT
CGATTAGGCCAATTAAAAGTTGCGATGAACTGTTTTTATTTATCAGAGTT
GTCGTCCGTCGATGAACCGAAGGATAATTCGTGGCAGAATAACTTTTTTG
AAGCTCAAAATCGCTGGTATTTCCTTCGCAAAGATAGATGGAATGGCCCA
CTATATAACGAAGGTGCTGTGGGCTCTCTCATATTCCGATTCGATTCAAA
ACCCTTTGTACACAATCCACGAGTTTCAGTTTGGGAGGTTCGTCAAATAT
TCGAATTTGGAACAAGGAAAATCCATTTTTTTCTGTTTTTTTAAATGAGT
ATTGACATTTTTATACGAAATTTTATGTTCTAGCTTGCACTCAGTGATGT
GGCTATTCCTTGGAGCTTTTTCAAAGACCATTCAGAGCCAATAATTCAAG
CCTATTACAGATACATGAATAACGTTGTTTCCCACTTAGCTGGTGAGGAT
TCGGAGGTGGGCATGGAACTGACAAAAATTTTATCGTTTGACATGAAAGT
GGCTAATGTACGTATGAAGATTGAAATGTAGTAGAAAAATTGAGAAATTT
TGTTTCATCATTTTTCAAATTCTCCAACCCCATGTACTTTTACATTTGCA
CATTTACTTTTTACTTAATTCAAAGTTCCGGTGAGTTAATTTTGAACGAA
TTTATGTAGATTCTCTTTCCGAAGTATGAAACATACGAAAATTCTTATCA
ATATCACACGATGACTGTTGGAGAACTCGATCGAAAGTTTCCAAGTTGGG
AATTGAAACAACAAATGTTTGAAATAAACGATTCCGATATAATCCAAATA
CCGTGGGATCTAAAAGCTCTTGAGACTTTGCGAGAATGGATATCGAAAAA
GCAATCAACGAGGGACTTCGATTATTGGGTAACATGGCGTTTCACTGACT
ACTTGAACGACGAACTGGGCTCATTTGTTTCCCACGAAAAACAGCTGTTG
AAAGACGCTATTTCCGGTACTCGCACAACGAATAGTGTGAAAGAAAAGTG
CGTTGAACAAGTTCGAAAAAACTCACCATTTTTACTAAATGCTTTGTATT
ATGGGCAATACTTGGACCACAATCTCATTAGAGGTTTCAACGAAATTTTG
GAAAATGTTCAACAACAACATGTGATATTGATAAACGAGGTAATTGTTTT
ACTTTACGGATTCATTCATTTTGATGAAACTTGGAAATACTTTGATATTA
TCGAAGTTTACAACACGCCATGGAACTATAAGTTTCATTTATAATAATAG
TAAAAACATGAATAATTATAGTTCATTTTTTCACGATTTTCGTTACCAAT
ATTTTTGTTTTTTTTTTACTACTTTAGACGAGACTTTATAGTAATTGTGA
ATACTTTTTAATTTAATTTTTAACAAAAAATTATCTTATAGGTACAAATT
TTTTGCTCAAGATATTGCATAAAAATTGACTGAGGAAAAATTATGACATA
AATGTAAAAAATATTTAATATTTTTACCGCGATTTTTACAGGCTGAATGG
TTGGATGGCAAAATAAAAAGGTATGCTTTCCAAAAAGTCAAGGAAATAAG
CAACAACGTTGGTATTTTCGAGAAATTCATGCTCCATAAAAATTCCAAAC
GGTCTGATAATGATCCTAAATTATCAGACGGTTTTTTAGCAGAAAATAGA
GCAAATCTCACTAAAATCTTGATTCATTTGAATGACTCGTCGAGCGAAGA
GAGATATAACTTTATAAAAGGCCATGCAAAATACAGTTACGAATCACAAC
GTATTAGTAAGTTTTCTAATAACTGTCTAATGGAATCACACCAGAGGTGA
GAAATCCTTGATTTTGGTAATTTTACCTGTGCAGGCCTTGGTGGTGTGAC
ATTTACAGACGCTTATTACGATGTCGATCGACCAGACGCTCTAAATTACG
GGGCTTTGGGGTACGTGCTTGGTACCGAACTGGCCCACAGTCTTGATAAC
AAGGGAAGACATTATCTTAAAAATGGTAACGTCGAAATATGGTGGGATTC
CAAAAATGATGAAAGCTTTGTTAATCGCACAAGGTGTTTTGTTAAAAAGT
ATAGAAAATACGTCTTGGATGAGTTTGGAATCCATGTAAGTATTTATAAC
AAATATATTTAAGTGATTTAAGTAACAAATATCGTCAGCCAATTTTCGGT
TACGTCATGACAAAATAAATTCAATTATTTTGTTTCTGAAATGATTGAGA
ATGAGATTGCAAAATTTTCTAAGCATTTACTCCAATGCGACGATTTCATG
ACGTCACAAAGAATATGAATCGCTCTCACGGACAAACGGCTCAAGCGAAA
AATCTCAAATTAAATCATAATTTTTTACGATTTTTTATCTTTTGATTGAT
TCTTGTTCGAAGTAAATCCGTCCAACCAATTCCAAGAAATCTAGTTTTTC
ATTTTCATAATCGACCCATTCAAGAACTTTTTTTTCTTGGAGTCAGCAGA
TTTTGATTGTTACTGAATAAATTTCACGATTGATTCGATGTAATGATACT
TTTTGCAGATTAATAGTTCAAAGCCTCGGGATGAAGATATTGCCGATAAC
CTGGGTGCCAAGGCGGCGTATTTTGCATACTGCAAAAGTGCATGGCTGAA
AAATCGCGAAAAAACATTGCCTGGTCTGGACTACTCTCCGAAACAACTGT
TTTGGATCAGTTTAGCCACAACTCAATGTGCAAGATACCGGCCAGAATAC
TCGATGTACGGGGCTGAAGCGGACGAGCACACATTGTCGAAAGTTCGAGT
CAACGTGCCGCTGTCAAATCTTAAAGAATTCGCAAATGATTTCAAATGTC
GCCCGAATTCGAAGATGAATCCTGCGACAAAGTGTTCCATATGGTGA back to topCoding sequence (CDS) from alignment at scaffold_10:649445..652741- >gene.scaffold_10.g59.t1-RA ID=gene.scaffold_10.g59.t1-RA|Name=gene.scaffold_10.g59.t1-RA|organism=Campoletis sonorensis|type=CDS|length=1497bp|location=Sequence derived from alignment at scaffold_10:649445..652741- (Campoletis sonorensis) ATGAATACCAGGGTTAAACCGTGCGACGATTTTTACGAGTTTGTTTGTGG AAACTATGCGCAAACAGCGACAATACCCGATGGTAAGCCAATGATTATTC CGCGTTACGAAAAGGAACAAGAAACACTATCGCGTTTGCAAAGGATCATA GAAGACATTGATGAGTCAATAGCACCCGAGAAATTTTCGGAGCTTAAAAA AATGTACAAAGAATGCATAGCTAACGAACTCGATCGAAAGTTTCCAAGTT GGGAATTGAAACAACAAATGTTTGAAATAAACGATTCCGATATAATCCAA ATACCGTGGGATCTAAAAGCTCTTGAGACTTTGCGAGAATGGATATCGAA AAAGCAATCAACGAGGGACTTCGATTATTGGGTAACATGGCGTTTCACTG ACTACTTGAACGACGAACTGGGCTCATTTGTTTCCCACGAAAAACAGCTG TTGAAAGACGCTATTTCCGGTACTCGCACAACGAATAGTGTGAAAGAAAA GTGCGTTGAACAAGTTCGAAAAAACTCACCATTTTTACTAAATGCTTTGT ATTATGGGCAATACTTGGACCACAATCTCATTAGAGGTTTCAACGAAATT TTGGAAAATGTTCAACAACAACATGTGATATTGATAAACGAGGCTGAATG GTTGGATGGCAAAATAAAAAGGTATGCTTTCCAAAAAGTCAAGGAAATAA GCAACAACGTTGGTATTTTCGAGAAATTCATGCTCCATAAAAATTCCAAA CGGTCTGATAATGATCCTAAATTATCAGACGGTTTTTTAGCAGAAAATAG AGCAAATCTCACTAAAATCTTGATTCATTTGAATGACTCGTCGAGCGAAG AGAGATATAACTTTATAAAAGGCCATGCAAAATACAGTTACGAATCACAA CGTATTAGCCTTGGTGGTGTGACATTTACAGACGCTTATTACGATGTCGA TCGACCAGACGCTCTAAATTACGGGGCTTTGGGGTACGTGCTTGGTACCG AACTGGCCCACAGTCTTGATAACAAGGGAAGACATTATCTTAAAAATGGT AACGTCGAAATATGGTGGGATTCCAAAAATGATGAAAGCTTTGTTAATCG CACAAGGTGTTTTGTTAAAAAGTATAGAAAATACGTCTTGGATGAGTTTG GAATCCATATTAATAGTTCAAAGCCTCGGGATGAAGATATTGCCGATAAC CTGGGTGCCAAGGCGGCGTATTTTGCATACTGCAAAAGTGCATGGCTGAA AAATCGCGAAAAAACATTGCCTGGTCTGGACTACTCTCCGAAACAACTGT TTTGGATCAGTTTAGCCACAACTCAATGTGCAAGATACCGGCCAGAATAC TCGATGTACGGGGCTGAAGCGGACGAGCACACATTGTCGAAAGTTCGAGT CAACGTGCCGCTGTCAAATCTTAAAGAATTCGCAAATGATTTCAAATGTC GCCCGAATTCGAAGATGAATCCTGCGACAAAGTGTTCCATATGGTGA back to top
Synonyms
The feature 'gene.scaffold_10.g59.t1-RA' has the following synonyms
Synonym |
gene.scaffold_10.g59.t1-PA |
gene.scaffold_10.g59.t1 |
|