Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
AED | 0.56 |
QI | 18|0|0.25|0.75|1|1|4|0|86 |
eAED | 0.94 |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Species | Type | Position |
Cotesia_rubecula016964 | Cotesia_rubecula016964 | Cotesia rubecula | gene | scaffold_836 1727..3134 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
Cotesia_rubecula016964-RA:exon:984 | Cotesia_rubecula016964-RA:exon:984 | Cotesia rubecula | exon | scaffold_836 1727..1753 + |
Cotesia_rubecula016964-RA:exon:985 | Cotesia_rubecula016964-RA:exon:985 | Cotesia rubecula | exon | scaffold_836 2138..2229 + |
Cotesia_rubecula016964-RA:exon:986 | Cotesia_rubecula016964-RA:exon:986 | Cotesia rubecula | exon | scaffold_836 2892..3021 + |
Cotesia_rubecula016964-RA:exon:987 | Cotesia_rubecula016964-RA:exon:987 | Cotesia rubecula | exon | scaffold_836 3105..3134 + |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
Cotesia_rubecula016964-RA:five_prime_utr | Cotesia_rubecula016964-RA:five_prime_utr | Cotesia rubecula | five_prime_UTR | scaffold_836 1727..1744 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
Cotesia_rubecula016964-RA:cds | Cotesia_rubecula016964-RA:cds | Cotesia rubecula | CDS | scaffold_836 1745..1753 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >Cotesia_rubecula016964-RA ID=Cotesia_rubecula016964-RA|Name=Cotesia_rubecula016964-RA|organism=Cotesia rubecula|type=mRNA|length=279bp|location=Sequence derived from alignment at scaffold_836:1727..3134+ (Cotesia rubecula)|Notes=Excludes all bases but those of type(s): exon.
AGTTGGACACTTATAAAAATGGGAACACGTCTATCTATACTTCCAAATTT TCAAACCGGTACCCAAAACTTGAACATGCTGGAGCCGTATAATTTTAACA GCACTCTCATCTCTAATAGGACATTTAATTCTTTGCATAAAAAGTTCTTA TCAATTTTCCTGTATCTCTCGCTCTTCAGCCAGAATTTGAACTCAATCCA AATTAGATTTTTACAACCTCAATTAGCCATTACTTCCCAAAAGCGTGGTA TGGCGCAGGTGGTGATTGAAAGGAACTAA back to topprotein sequence of Cotesia_rubecula016964-RA >Cotesia_rubecula016964-PA ID=Cotesia_rubecula016964-PA|Name=Cotesia_rubecula016964-RA|organism=Cotesia rubecula|type=polypeptide|length=87bp
MGTRLSILPNFQTGTQNLNMLEPYNFNSTLISNRTFNSLHKKFLSIFLYL SLFSQNLNSIQIRFLQPQLAITSQKRGMAQVVIERN. back to topmRNA from alignment at scaffold_836:1727..3134+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >Cotesia_rubecula016964-RA ID=Cotesia_rubecula016964-RA|Name=Cotesia_rubecula016964-RA|organism=Cotesia rubecula|type=mRNA|length=1408bp|location=Sequence derived from alignment at scaffold_836:1727..3134+ (Cotesia rubecula) AGTTGGACACTTATAAAAATGGGAACAGTACTTGAACAGACTTCTCGAAT
TGTTGCAATACAAAATCCGTAGATTTATTATGAGTAATATGCACATTTTA
TAATTATTCAATCATACAGTAATTGATTTCTGTAAGTTTTTTCAATTATA
AATCAAAACAATTATATTTTTGTTAACTTAAAAGTTGACATATCGAAAAT
AGCCGATAGATGCTATTTTTTTCATGAGAAACGAACTAAACCGTAAACCG
AACAATCAGTAAAAAAAACGGTATATCATCATTTTAAGTAAAAAAAAATC
TGAGATTTTTAGCGGGAGGTTAAAAATTGTGCCACCCAATGAAACAGTCT
TTTTTAAAGTATACAAATTTTTTGCAAACAAATAAGCTATAATTTTTATA
CTAAATTTTAGCGTCTATCTATACTTCCAAATTTTCAAACCGGTACCCAA
AACTTGAACATGCTGGAGCCGTATAATTTTAACAGCACTCTCATCTCTAA
TAGGTTTATAGACTAGTGATCAGCATTGTGATTTGTATTTAATACTGTAA
AATAAATAAGTTTTATAGCTAAAAATTAGAGTAGTTAAAAATCATTGAAC
ATTTTAAATTGAGTTTTTTTAATTTATAATTGAAAATTTACTTTGTCATC
CATAAAAAATGTAATTAAAAAAATTAAATACAAATATTTCTTATTTTTAA
ATGAACATATTAAATATTCATAGTATTATTTTTAATACTAATCAATGACA
TGTTATGATTCTTTTGATATTTCAATAAAAGGTTGAAAATTTTTGGTGTG
CCTATTGCCATATATTTTATTAGTTCATCTACTGCTCCCGGAGTGTTCAA
CTACTGCGGCTTGTCAGAATTGATTGTTCAGCTACTATTCCTTTCATAGT
CTATCTTAAAAACGTTGTCAAAATATAAATATTCAATTGTCTGCGTTATT
TTGCACTTCAATTAACTTAAAATTGTTAATATTTTCATGAAAATCACTAA
TTTGAACTGATAATTACATCTTTATATATTAAAAGTAGGGTCAAATACGT
TTTACTTCGAAATCTGTTCAACTACTGGGTACTTTACGTACTCAGACAAT
TTTGAAGTTAAAATTTGGGCTAAATAATAGAGCTACAAAAAATTACAAGA
AACCTTTTTTTTTAGGACATTTAATTCTTTGCATAAAAAGTTCTTATCAA
TTTTCCTGTATCTCTCGCTCTTCAGCCAGAATTTGAACTCAATCCAAATT
AGATTTTTACAACCTCAATTAGCCATTACTTCCCAAAAGCGTGGTGTAAA
TCTAAGTACTCTTCCTCAGAATTTACTTCTGTTTTTCTTCTGGATTGTTA
AGTTTATTATGTTATTTTATCGTTACAGATGGCGCAGGTGGTGATTGAAA
GGAACTAA back to topCoding sequence (CDS) from alignment at scaffold_836:1727..3134+ >Cotesia_rubecula016964-RA ID=Cotesia_rubecula016964-RA|Name=Cotesia_rubecula016964-RA|organism=Cotesia rubecula|type=CDS|length=261bp|location=Sequence derived from alignment at scaffold_836:1727..3134+ (Cotesia rubecula) ATGGGAACACGTCTATCTATACTTCCAAATTTTCAAACCGGTACCCAAAA CTTGAACATGCTGGAGCCGTATAATTTTAACAGCACTCTCATCTCTAATA GGACATTTAATTCTTTGCATAAAAAGTTCTTATCAATTTTCCTGTATCTC TCGCTCTTCAGCCAGAATTTGAACTCAATCCAAATTAGATTTTTACAACC TCAATTAGCCATTACTTCCCAAAAGCGTGGTATGGCGCAGGTGGTGATTG AAAGGAACTAA back to top
Synonyms
The feature 'Cotesia_rubecula016964-RA' has the following synonyms
Synonym |
maker-scaffold_836-snap-gene-0.25-mRNA-1 |
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