Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
AED | 0.07 |
QI | 130|1|1|1|0.75|0.8|5|110|414 |
eAED | 0.07 |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Species | Type | Position |
Cotesia_vestalis012211 | Cotesia_vestalis012211 | Cotesia vestalis | gene | scaffold_10627 344..3503 + |
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
Cotesia_vestalis012211-RA:exon:4920 | Cotesia_vestalis012211-RA:exon:4920 | Cotesia vestalis | exon | scaffold_10627 344..633 + |
Cotesia_vestalis012211-RA:exon:4921 | Cotesia_vestalis012211-RA:exon:4921 | Cotesia vestalis | exon | scaffold_10627 1069..1409 + |
Cotesia_vestalis012211-RA:exon:4922 | Cotesia_vestalis012211-RA:exon:4922 | Cotesia vestalis | exon | scaffold_10627 1472..1791 + |
Cotesia_vestalis012211-RA:exon:4923 | Cotesia_vestalis012211-RA:exon:4923 | Cotesia vestalis | exon | scaffold_10627 2753..2835 + |
Cotesia_vestalis012211-RA:exon:4924 | Cotesia_vestalis012211-RA:exon:4924 | Cotesia vestalis | exon | scaffold_10627 3053..3503 + |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
Cotesia_vestalis012211-RA:five_prime_utr | Cotesia_vestalis012211-RA:five_prime_utr | Cotesia vestalis | five_prime_UTR | scaffold_10627 344..473 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
Cotesia_vestalis012211-RA:cds | Cotesia_vestalis012211-RA:cds | Cotesia vestalis | CDS | scaffold_10627 474..633 + |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
Cotesia_vestalis012211-RA:three_prime_utr | Cotesia_vestalis012211-RA:three_prime_utr | Cotesia vestalis | three_prime_UTR | scaffold_10627 3394..3503 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >Cotesia_vestalis012211-RA ID=Cotesia_vestalis012211-RA|Name=Cotesia_vestalis012211-RA|organism=Cotesia vestalis|type=mRNA|length=1485bp|location=Sequence derived from alignment at scaffold_10627:344..3503+ (Cotesia vestalis)|Notes=Excludes all bases but those of type(s): exon.
GTTTATCGCACTGGCAGTTTATTATCTCAACACTCGCGAGATAAATATGC AAAGTAAGTGTATTAGTAAATGTAAGACTCTTTCTTCTTAATTGATCAAC ATCATTTCATCGCGTCAGTCCGAGTCGATCATGTTCAACCTCCTCAATCA TCTCAAACATTCCTCTCGTTCTTCATTCGTGTTCCGTTGTAAAAAAATTG TAACCTCTAAGAGTTGTAACTTCAAAAGTGTGCGGGAACAATCGACCGCT AGAAGAACTTGTCTGTATGATTTCCATGTTCAAAATCAAGGAAAAATCGT AGACTTTGCGGGATGGCTATTGCCAGTGCAGTACAAAGAAGCGATAGCAG TCTCGCATCAGCATACAAGAACCCAGACGTCGTTGTTCGACGTCGGACAT ATGCTCCAGACGATAGTCTGGGGCAAAAATTCCGGAGAATTCCTTGAAAG TCTGACAACTGCAGACTTAAAAAACTTAAAACCCGGCGGCTCTACATTGA CTGTCTTCACCAATGACCAGGGTGGAATCCTGGACGACCTGATTATTACC AAGGATGCTGAAGATCGCTTCTACGTGGTGTCTAACGCCGGTCGCAGGGA TTCCGACATTGATTTGTTCAACCAACGCAAGGATGAGTTTGATAAAAGAG GAAGACGAGTGCAACTGGAGTACCTGGACCCTCTGGAGCAAGGACTGGTG GCGCTCCAGGGACCTGGAGCGGCCAAAGTGCTCCAGAAACTCGTTGAAGT TAATTTAAATGAAGTTTATTTTATGAATTCTGTAGAGACGCAAGCTAAGA AGATTAATGTGAGGATTACCAGGTGTGGCTACACCGGGGAAGACGGGTTC GAAATTTCCTTCAAGGGGAAACATGCTAGAGACATTGTCGAGATGATTCT TGGACAGCAAGAGGTTAAAATGGCTGGTCTTGGCGCTAGAGATAGTTTGA GGTTAGAAGCTGGTTTATGTTTATATGGTCATGATATTAATGAAGAAATT ACTCCGGTTGAAGCTGGGCTTACTTGGCTTATTGCAAAACGCAGACGTCA GGAAGCAAACTTTCCTGGAGCGGAAATAATAATTTCCCAAATCGAACAAG GAGTCCAGAAAAAACGAGTCGGACTGACGATAAACCAGGGCCCGCCGGCC CGCGAAAACGCTGCTATACTTACCGAATCTGGAGAGAAAATTGGCGCGGT CACTTCTGGAGGACCCAGTCCTACTCTTGGGAAGTCTATTGCCATGGGCT ACGTACCTCCGAGTTTTTCTAAAACTGGCACGAATTTACTGGTACAAGTT AGAGGAAAAAATTGGAAAGCTACTGTCACAAAAATGCCCTTTATTAAACC TAATTATTATATTAAAGCAAAATAATATTAAGAATTATATTATAAATATT CAAGTCTGTAAAATTTAACTTAATTAGAATAATAATTATATTAAATTACG ATAAAAAAATTTATTTAAATAAAAATTAATTCCAC back to topprotein sequence of Cotesia_vestalis012211-RA >Cotesia_vestalis012211-PA ID=Cotesia_vestalis012211-PA|Name=Cotesia_vestalis012211-RA|organism=Cotesia vestalis|type=polypeptide|length=415bp
MFNLLNHLKHSSRSSFVFRCKKIVTSKSCNFKSVREQSTARRTCLYDFHV QNQGKIVDFAGWLLPVQYKEAIAVSHQHTRTQTSLFDVGHMLQTIVWGKN SGEFLESLTTADLKNLKPGGSTLTVFTNDQGGILDDLIITKDAEDRFYVV SNAGRRDSDIDLFNQRKDEFDKRGRRVQLEYLDPLEQGLVALQGPGAAKV LQKLVEVNLNEVYFMNSVETQAKKINVRITRCGYTGEDGFEISFKGKHAR DIVEMILGQQEVKMAGLGARDSLRLEAGLCLYGHDINEEITPVEAGLTWL IAKRRRQEANFPGAEIIISQIEQGVQKKRVGLTINQGPPARENAAILTES GEKIGAVTSGGPSPTLGKSIAMGYVPPSFSKTGTNLLVQVRGKNWKATVT KMPFIKPNYYIKAK. back to topmRNA from alignment at scaffold_10627:344..3503+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Cotesia_vestalis012211-RA ID=Cotesia_vestalis012211-RA|Name=Cotesia_vestalis012211-RA|organism=Cotesia vestalis|type=mRNA|length=3160bp|location=Sequence derived from alignment at scaffold_10627:344..3503+ (Cotesia vestalis) GTTTATCGCACTGGCAGTTTATTATCTCAACACTCGCGAGATAAATATGC
AAAGTAAGTGTATTAGTAAATGTAAGACTCTTTCTTCTTAATTGATCAAC
ATCATTTCATCGCGTCAGTCCGAGTCGATCATGTTCAACCTCCTCAATCA
TCTCAAACATTCCTCTCGTTCTTCATTCGTGTTCCGTTGTAAAAAAATTG
TAACCTCTAAGAGTTGTAACTTCAAAAGTGTGCGGGAACAATCGACCGCT
AGAAGAACTTGTCTGTATGATTTCCATGTTCAAAATCAAGGTTAGTTTAA
TTTTAAAAAAATTTTCTTAACACTAGAATAAATATTTTTTAATAGCAAAT
TATTTTTTAAACATTTCTGCTGATTTTTGAGGTTTATTTATGTAATTTTT
TATTTTCATCAGATTTATAGAAATTATTATTAATAATTATAATTAAAATT
AGTTCATTAATCCAAAAAAAGACGACTGAGGGCTTTAAAAAAATTTTTAC
ACCAATATTTAGTTATTTAATTTTAACTCTCTACAAAGGAGCAGATTTAG
CGATCATGCGCCATCTGTTGGAAGTTTGCAACACTTTATAATTATTTAAT
ATAACCAACTAACTTATATTACTTAAATAATTATTTTTAATTATTAAACA
ATATATTTTTGCTTTTAAATTTTTATATCAGTGTATTAATTTTTTTTATA
AAAAAAAAATTGTTTTTATTTTAAGGAAAAATCGTAGACTTTGCGGGATG
GCTATTGCCAGTGCAGTACAAAGAAGCGATAGCAGTCTCGCATCAGCATA
CAAGAACCCAGACGTCGTTGTTCGACGTCGGACATATGCTCCAGACGATA
GTCTGGGGCAAAAATTCCGGAGAATTCCTTGAAAGTCTGACAACTGCAGA
CTTAAAAAACTTAAAACCCGGCGGCTCTACATTGACTGTCTTCACCAATG
ACCAGGGTGGAATCCTGGACGACCTGATTATTACCAAGGATGCTGAAGAT
CGCTTCTACGTGGTGTCTAACGCCGGTCGCAGGGATTCCGACATTGATTT
GTTCAACCAACGCAAGGTTCTTCCCTCTAATTATTTTTTAATAGTTCCAA
TAATTTGAATTTCTTCCTTGTTTTCCAGGATGAGTTTGATAAAAGAGGAA
GACGAGTGCAACTGGAGTACCTGGACCCTCTGGAGCAAGGACTGGTGGCG
CTCCAGGGACCTGGAGCGGCCAAAGTGCTCCAGAAACTCGTTGAAGTTAA
TTTAAATGAAGTTTATTTTATGAATTCTGTAGAGACGCAAGCTAAGAAGA
TTAATGTGAGGATTACCAGGTGTGGCTACACCGGGGAAGACGGGTTCGAA
ATTTCCTTCAAGGGGAAACATGCTAGAGACATTGTCGAGATGATTCTTGG
ACAGCAAGAGGTTAAAATGGCTGGTCTTGGCGCTAGAGATAGTTTGAGGT
TATTAGAAATTTAAAAAAAAATTATTTTATATTAGAATTTAAATTTGCGC
GCGCAATCGCGCAACTTACTGTAGACTTTGCATATATTTTGATGCTTTTG
ATATATTTAACCAATCACGTTACGAATAGTTTGTTTATTTGTGTATATTT
TCATATTTTTCATCTAAATTATAAGAGTGGACTNNNNNNNNNNTATGCTT
ATGATATATTTAACCAATCACATCACGAATAAATTGGCTTCAACATATAC
TATACCTTAATTCTCATCTCAATTTTATATTGGGACTAGaatttgaattt
gcgcgcgcaagcgcgcgccttactattagcgtttgcatatattttcatgc
ttatgatatattcaaccaatcacatcacgaatAAATTGGCTTCAACATAT
ACTATACCTTAATTCTCATCTCAATTTTATATTGAGACTAGAATTTAAAT
TCGCGCGCGCCTCATATTTATTGTCATGATATATTTATGTGTTGTTTGTG
TATATTATATTCACTTTCAACCAATCAGAATGAGAataaatattttcggc
caatcacatcacgAATAAATTAGTTTCACATACATTTCATCTCTATTTTA
ATATCAAAGACTAGAATTCAAATTTGCGCGCGCAAACGAGCGCCTTAACT
ATAGAGTTTGCATATATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACATGCATTTCATCT
CTATTTTAATATTAAGATAAGAGTGAAAAAAGATTAATAATTTTTAATTG
GATTTTTAGGTTAGAAGCTGGTTTATGTTTATATGGTCATGATATTAATG
AAGAAATTACTCCGGTTGAAGCTGGGCTTACTTGGCTTATTGGTAAAATT
TTTTATATCAATATATATGTCATCCATTATTTTATAAATACCAGAATTCA
AATTTGCGCGCGCAAGCGCGCACCTAACTGTAGACTTTGCATATATTTTC
ATGCTTATATATTTGACCAATCACGTTACGAATagcTTGCAACACATATT
TTTCATCTTAATTTTAGTACAGTGATACAATAAATCAAATAAAAATAAAA
AATTTGCAGCAAAACGCAGACGTCAGGAAGCAAACTTTCCTGGAGCGGAA
ATAATAATTTCCCAAATCGAACAAGGAGTCCAGAAAAAACGAGTCGGACT
GACGATAAACCAGGGCCCGCCGGCCCGCGAAAACGCTGCTATACTTACCG
AATCTGGAGAGAAAATTGGCGCGGTCACTTCTGGAGGACCCAGTCCTACT
CTTGGGAAGTCTATTGCCATGGGCTACGTACCTCCGAGTTTTTCTAAAAC
TGGCACGAATTTACTGGTACAAGTTAGAGGAAAAAATTGGAAAGCTACTG
TCACAAAAATGCCCTTTATTAAACCTAATTATTATATTAAAGCAAAATAA
TATTAAGAATTATATTATAAATATTCAAGTCTGTAAAATTTAACTTAATT
AGAATAATAATTATATTAAATTACGATAAAAAAATTTATTTAAATAAAAA
TTAATTCCAC back to topCoding sequence (CDS) from alignment at scaffold_10627:344..3503+ >Cotesia_vestalis012211-RA ID=Cotesia_vestalis012211-RA|Name=Cotesia_vestalis012211-RA|organism=Cotesia vestalis|type=CDS|length=1245bp|location=Sequence derived from alignment at scaffold_10627:344..3503+ (Cotesia vestalis) ATGTTCAACCTCCTCAATCATCTCAAACATTCCTCTCGTTCTTCATTCGT GTTCCGTTGTAAAAAAATTGTAACCTCTAAGAGTTGTAACTTCAAAAGTG TGCGGGAACAATCGACCGCTAGAAGAACTTGTCTGTATGATTTCCATGTT CAAAATCAAGGAAAAATCGTAGACTTTGCGGGATGGCTATTGCCAGTGCA GTACAAAGAAGCGATAGCAGTCTCGCATCAGCATACAAGAACCCAGACGT CGTTGTTCGACGTCGGACATATGCTCCAGACGATAGTCTGGGGCAAAAAT TCCGGAGAATTCCTTGAAAGTCTGACAACTGCAGACTTAAAAAACTTAAA ACCCGGCGGCTCTACATTGACTGTCTTCACCAATGACCAGGGTGGAATCC TGGACGACCTGATTATTACCAAGGATGCTGAAGATCGCTTCTACGTGGTG TCTAACGCCGGTCGCAGGGATTCCGACATTGATTTGTTCAACCAACGCAA GGATGAGTTTGATAAAAGAGGAAGACGAGTGCAACTGGAGTACCTGGACC CTCTGGAGCAAGGACTGGTGGCGCTCCAGGGACCTGGAGCGGCCAAAGTG CTCCAGAAACTCGTTGAAGTTAATTTAAATGAAGTTTATTTTATGAATTC TGTAGAGACGCAAGCTAAGAAGATTAATGTGAGGATTACCAGGTGTGGCT ACACCGGGGAAGACGGGTTCGAAATTTCCTTCAAGGGGAAACATGCTAGA GACATTGTCGAGATGATTCTTGGACAGCAAGAGGTTAAAATGGCTGGTCT TGGCGCTAGAGATAGTTTGAGGTTAGAAGCTGGTTTATGTTTATATGGTC ATGATATTAATGAAGAAATTACTCCGGTTGAAGCTGGGCTTACTTGGCTT ATTGCAAAACGCAGACGTCAGGAAGCAAACTTTCCTGGAGCGGAAATAAT AATTTCCCAAATCGAACAAGGAGTCCAGAAAAAACGAGTCGGACTGACGA TAAACCAGGGCCCGCCGGCCCGCGAAAACGCTGCTATACTTACCGAATCT GGAGAGAAAATTGGCGCGGTCACTTCTGGAGGACCCAGTCCTACTCTTGG GAAGTCTATTGCCATGGGCTACGTACCTCCGAGTTTTTCTAAAACTGGCA CGAATTTACTGGTACAAGTTAGAGGAAAAAATTGGAAAGCTACTGTCACA AAAATGCCCTTTATTAAACCTAATTATTATATTAAAGCAAAATAA back to top
Synonyms
The feature 'Cotesia_vestalis012211-RA' has the following synonyms
Synonym |
maker-scaffold_10627-augustus-gene-0.4-mRNA-1 |
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