Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| AED | 0.06 |
| QI | 0|0.5|0.66|1|1|1|3|1044|532 |
| eAED | 0.06 |
| Full name | DV3000102 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| DV3000102-RA-three_prime_UTR | DV3000102-RA-three_prime_UTR-7 | Daktulosphaira vitifoliae | three_prime_UTR | scaffold54 1222712..1223755 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >DV3000102-RA ID=DV3000102-RA|Name=DV3000102-RA|organism=Daktulosphaira vitifoliae|type=mRNA|length=2643bp|location=Sequence derived from alignment at scaffold54:1222712..1225541- (Daktulosphaira vitifoliae)|Notes=Excludes all bases but those of type(s): exon.
ATGTTTTCAAACATATCGAGTTGGTTTTACGGAAGTGCTCCAGCTGAAAA
AACTGCCGAAGTATCTGAGCCATGCCCAGATGCTTTAATTGAAATTGACG
AAAATTTTGAACCAATCGAAGTGGACGAATCTGATGATTGGGTTATTCTA
GGTGATTCCGAAGTGGATGTTAAAAAGACTGATGATGAAGGGATGACTGT
TGAACGACACAGCCGATCATCTTCATCTTGCCAAAATGAAGAAGGATGGT
TTGTTACTCCTCCTCCATGTTTTACTTCGGTTGGACCATCAGACATGGAG
ACTACTCCCTTGGAAAATCTTCTAATTGAGCATCCTAGTATGTCTGTTTA
CCATAGTCCAACTGTAAGTTCAGTGTTACCAGAAAAAAGAACTCTTGCAT
CGATTTCTAGCAATAATGAGTCATTTGATGATGACACACCAATTGTTTTT
GAATCAGTGAAAAGCAGAAATCGTTTACCAAGACAACATAAAAAGAAGAC
CTTGAAGAAGTCTGTTCCCTTAGATGAATTTAAAGTTTCCCCAGAAATAA
TTTTGGGAAATGTTCCAACAGTAAATGCACCTATCATTGTTGAAGCTAAA
AAACTAAATCGTTCAAATTTAGAAATGTTCCCTGTATTAAGTGCTGTATC
TAAACCTAAGGTATCTTCTCAGAAAGTGGTTCGCAGTTACAAAGAAGTAG
CTGCTTCATTGAAACGCAGACAACCTAAAAACGAAATTTCTCAAACTAAT
AAACATGTAAAAGTTGAAACTGAAATCACAACTATAAATAAACCAAAAGT
ATTGACATCTACTACAGAAATTGAGACACCTGTACAAGTTATAACAACTC
CTAAAATAGTATTAAAGAAAAGCCGTAAACCCCCAAGTTCATTGCCTCAT
TTAGTTAAAAATGAGGCAAAGAAAATTCCAAAAGAAATTGTTCCTAAAAT
GCGCGCTCAAGAGCGTTTAGTTAGATTAAGTTCCTTCAGTGTCATTCAAT
CAACAGATTTGCCAAATAATGAAAAATCATCAAAGAAAAATGTTGCTAAA
TTTGTTAATGGAGAACAATATGCCATTAACGATGAAAATATAAAATCTAC
TGTAGTAGTACCTAAACCTGTTGTTATTGGTTGTGAAGAAAAGAAAAAAA
GGAAAGTACAAAGAAAAAATATTATTAAACCAACTAAAAATGAAAAGGTT
GAAGAATCTACAACCAATCTGGCAATTACCTGCAATCCTCAAACAGTAGT
AGAACGACCTAAGTGTGAAATTACAGAAAAAAGGGATCAAAAATCTCCAG
TGAAGAAAGAAAATATCATAATACCATTAACAACATCTATAGCATTGAAC
TCTCTAGTCTCACGTCCCGAAGAAAATGCTTATAAACATGAGTTACTTAA
AAGAGAGCTAGCAATGATTGCTGGCACAACTAAAGCTCAAAAATTACAAG
CTCATAGAGAGACACGGATTTTATGTCGCAATCAACTGGCACACATCAAT
CGTGTGAATTTAATGCTAAGTGCCAGTAATAAAAGACTGAGGAGGGCCGA
TAAGAATATGCGACCATCGGGTGCTAACAACAATCGCAAATGCTGTTAAT
TTTATTAACATATAAACAGCTATGTCTTTGTCTTAATAACATACTGGCTA
CAAAAATATTCAGTTAAAGATAGTCTCTATTATTTAAATAAATATTTATG
TTTAATCATAGGGTCAGTGGGATTAAAAAAATATATAAAATAATTTTAAC
AAAATTAAAAAAAGTTAAAAATTGAAAAAGAAAAAAAAAGTGTGATTGTT
TAAATATATTTTAATTAATATAATCCATTTATTTTTAATAATACTGACAC
TTATATTATTTCTTAAATTACAATCAGTCATAATAATATTTAAAACATCT
AGTTCATTTTTCTTCTAATTATTTTGTTGCTATTGCCTGTTTATAAAACT
GCTATACATAAGCACTGATAATTACTAATTACTAATTTGTTCTTGGAACA
AAGTAGTATTGAATATGAAGAAGTAATTTTGAGTATCATCAACTATTAAC
TTATACAGACATGTATAAAGTAAAATATTCTAATATTATTAGTTACCACT
CAGTAAATGAACTGTAATATTTGACCAGTATCATGTATATCCTCCATACA
TAAAAATAAAAGATTGTTTTTGTTATTAAATTGTACCTGATATAAATAAA
TATCTTTTAAGCAGAAATGGTTGAAAATGTGTTTTTGTGTGCATTTATTT
TGTAGACAATTTAACACTTAAACAAGTTCTTTTAAACATTATTTACTACA
AAATTAATAAATGTAGATATATTCTAAAAATGTAAGTAACCATGACTCGC
TATATCAACTATTCTGGTCGATATGGTGGCTAAACATTCAATCATTGTGT
AAATAATAAATTTTAATTTATTTTATTTTTGATTTACTATTAATGTATTT
TAAAAAATAACATGTGTTAGAAATCTTGAGTATTTTTAATTATTTATTCC
CAAAAGAAAAGATACTAAAAGCTGTATTAATTTTGCTTGTTACATGTATA
TAATAAAGTATAAATAATATTACTTATATTTTGTTTTCAGTACAATATTT
TTAATTTTTATTTATGTTAAAATCTATAAATTGTTTATTGAAA back to topprotein sequence of DV3000102-RA >DV3000102-PA ID=DV3000102-PA|Name=DV3000102-RA|organism=Daktulosphaira vitifoliae|type=polypeptide|length=533bp
MFSNISSWFYGSAPAEKTAEVSEPCPDALIEIDENFEPIEVDESDDWVIL
GDSEVDVKKTDDEGMTVERHSRSSSSCQNEEGWFVTPPPCFTSVGPSDME
TTPLENLLIEHPSMSVYHSPTVSSVLPEKRTLASISSNNESFDDDTPIVF
ESVKSRNRLPRQHKKKTLKKSVPLDEFKVSPEIILGNVPTVNAPIIVEAK
KLNRSNLEMFPVLSAVSKPKVSSQKVVRSYKEVAASLKRRQPKNEISQTN
KHVKVETEITTINKPKVLTSTTEIETPVQVITTPKIVLKKSRKPPSSLPH
LVKNEAKKIPKEIVPKMRAQERLVRLSSFSVIQSTDLPNNEKSSKKNVAK
FVNGEQYAINDENIKSTVVVPKPVVIGCEEKKKRKVQRKNIIKPTKNEKV
EESTTNLAITCNPQTVVERPKCEITEKRDQKSPVKKENIIIPLTTSIALN
SLVSRPEENAYKHELLKRELAMIAGTTKAQKLQAHRETRILCRNQLAHIN
RVNLMLSASNKRLRRADKNMRPSGANNNRKCC. back to topmRNA from alignment at scaffold54:1222712..1225541- Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >DV3000102-RA ID=DV3000102-RA|Name=DV3000102-RA|organism=Daktulosphaira vitifoliae|type=mRNA|length=2830bp|location=Sequence derived from alignment at scaffold54:1222712..1225541- (Daktulosphaira vitifoliae)
ATGTTTTCAAACATATCGAGTTGGTTTTACGGAAGTGCTCCAGCTGAAAA
AACTGCCGAAGTATCTGAGCCATGCCCAGATGCTTTAATTGAAATTGACG
AAAATTTTGAACCAATCGAAGTGGACGAATCTGATGATTGGGTTATTCTA
GGTAAAGGTAATTAAAAAAATATTTCAAAACAAGTTTATATCTTTTCCTT
AATCAACTTTTTTACAGGTGATTCCGAAGTGGATGTTAAAAAGACTGATG
ATGAAGGGATGACTGTTGAACGACACAGCCGATCATCTTCATCTTGCCAA
AATGAAGAAGGATGGTTTGTTACTCCTCCTCCATGTTTTACTTCGGTTGG
ACCATCAGACATGGAGACTACTCCCTTGGAAAATCTTCTAATTGAGCATC
CTAGTATGTCTGTTTACCATAGTCCAACTGTAAGTTCAGTGTTACCAGAA
AAAAGAACTCTTGCATCGATTTCTAGCAATAATGAGTCATTTGATGATGA
CACACCAATTGTTTTTGAATCAGTGAAAAGCAGAAATCGTTTACCAAGAC
AACATAAAAAGAAGACCTTGAAGAAGTCTGTTCCCTTAGATGAATTTAAA
GTTTCCCCAGAAATAATTTTGGGAAATGTTCCAACAGTAAATGCACCTAT
CATTGTTGAAGCTAAAAAACTAAATCGTTCAAATTTAGAAATGTTCCCTG
TATTAAGTGCTGTATCTAAACCTAAGGTATCTTCTCAGAAAGTGGTTCGC
AGTTACAAAGAAGTAGCTGCTTCATTGAAACGCAGACAACCTAAAAACGA
AATTTCTCAAACTAATAAACATGTAAAAGTTGAAACTGAAATCACAACTA
TAAATAAACCAAAAGTATTGACATCTACTACAGAAATTGAGACACCTGTA
CAAGTTATAACAACTCCTAAAATAGTATTAAAGAAAAGCCGTAAACCCCC
AAGTTCATTGCCTCATTTAGTTAAAAATGAGGCAAAGAAAATTCCAAAAG
AAATTGTTCCTAAAATGCGCGCTCAAGAGCGTTTAGTTAGATTAAGTTCC
TTCAGTGTCATTCAATCAACAGATTTGCCAAATAATGAAAAATCATCAAA
GAAAAATGTTGCTAAATTTGTTAATGGAGAACAATATGCCATTAACGATG
AAAATATAAAATCTACTGTAGTAGTACCTAAACCTGTTGTTATTGGTTGT
GAAGAAAAGAAAAAAAGGAAAGTACAAAGAAAAAATATTATTAAACCAAC
TAAAAATGAAAAGGTTGAAGAATCTACAACCAATCTGGCAATTACCTGCA
ATCCTCAAACAGTAGTAGAACGACCTAAGTGTGAAATTACAGAAAAAAGG
GATCAAAAATCTCCAGTGAAGAAAGAAAATATCATAATACCATTAACAAC
ATCTATAGCATTGAACTCTCTAGTCTCACGTCCCGAAGAAAATGCTTATA
AACATGAGTTACTTAAAAGAGAGCTAGCAATGATTGCTGGCACAACTAAA
GCTCAAAAAGTAAGTTAACTTTTTAGTGGCTTGATATAAATAAAAAATTA
TGAAATTGTTAGCAACTTAATATTTTTACCATACAAATTATTTAAATTAA
TTTCTTACATTGTGAAAATTATTTTTTTAGTTACAAGCTCATAGAGAGAC
ACGGATTTTATGTCGCAATCAACTGGCACACATCAATCGTGTGAATTTAA
TGCTAAGTGCCAGTAATAAAAGACTGAGGAGGGCCGATAAGAATATGCGA
CCATCGGGTGCTAACAACAATCGCAAATGCTGTTAATTTTATTAACATAT
AAACAGCTATGTCTTTGTCTTAATAACATACTGGCTACAAAAATATTCAG
TTAAAGATAGTCTCTATTATTTAAATAAATATTTATGTTTAATCATAGGG
TCAGTGGGATTAAAAAAATATATAAAATAATTTTAACAAAATTAAAAAAA
GTTAAAAATTGAAAAAGAAAAAAAAAGTGTGATTGTTTAAATATATTTTA
ATTAATATAATCCATTTATTTTTAATAATACTGACACTTATATTATTTCT
TAAATTACAATCAGTCATAATAATATTTAAAACATCTAGTTCATTTTTCT
TCTAATTATTTTGTTGCTATTGCCTGTTTATAAAACTGCTATACATAAGC
ACTGATAATTACTAATTACTAATTTGTTCTTGGAACAAAGTAGTATTGAA
TATGAAGAAGTAATTTTGAGTATCATCAACTATTAACTTATACAGACATG
TATAAAGTAAAATATTCTAATATTATTAGTTACCACTCAGTAAATGAACT
GTAATATTTGACCAGTATCATGTATATCCTCCATACATAAAAATAAAAGA
TTGTTTTTGTTATTAAATTGTACCTGATATAAATAAATATCTTTTAAGCA
GAAATGGTTGAAAATGTGTTTTTGTGTGCATTTATTTTGTAGACAATTTA
ACACTTAAACAAGTTCTTTTAAACATTATTTACTACAAAATTAATAAATG
TAGATATATTCTAAAAATGTAAGTAACCATGACTCGCTATATCAACTATT
CTGGTCGATATGGTGGCTAAACATTCAATCATTGTGTAAATAATAAATTT
TAATTTATTTTATTTTTGATTTACTATTAATGTATTTTAAAAAATAACAT
GTGTTAGAAATCTTGAGTATTTTTAATTATTTATTCCCAAAAGAAAAGAT
ACTAAAAGCTGTATTAATTTTGCTTGTTACATGTATATAATAAAGTATAA
ATAATATTACTTATATTTTGTTTTCAGTACAATATTTTTAATTTTTATTT
ATGTTAAAATCTATAAATTGTTTATTGAAA back to topCoding sequence (CDS) from alignment at scaffold54:1222712..1225541- >DV3000102-RA ID=DV3000102-RA|Name=DV3000102-RA|organism=Daktulosphaira vitifoliae|type=CDS|length=1599bp|location=Sequence derived from alignment at scaffold54:1222712..1225541- (Daktulosphaira vitifoliae)
ATGTTTTCAAACATATCGAGTTGGTTTTACGGAAGTGCTCCAGCTGAAAA
AACTGCCGAAGTATCTGAGCCATGCCCAGATGCTTTAATTGAAATTGACG
AAAATTTTGAACCAATCGAAGTGGACGAATCTGATGATTGGGTTATTCTA
GGTGATTCCGAAGTGGATGTTAAAAAGACTGATGATGAAGGGATGACTGT
TGAACGACACAGCCGATCATCTTCATCTTGCCAAAATGAAGAAGGATGGT
TTGTTACTCCTCCTCCATGTTTTACTTCGGTTGGACCATCAGACATGGAG
ACTACTCCCTTGGAAAATCTTCTAATTGAGCATCCTAGTATGTCTGTTTA
CCATAGTCCAACTGTAAGTTCAGTGTTACCAGAAAAAAGAACTCTTGCAT
CGATTTCTAGCAATAATGAGTCATTTGATGATGACACACCAATTGTTTTT
GAATCAGTGAAAAGCAGAAATCGTTTACCAAGACAACATAAAAAGAAGAC
CTTGAAGAAGTCTGTTCCCTTAGATGAATTTAAAGTTTCCCCAGAAATAA
TTTTGGGAAATGTTCCAACAGTAAATGCACCTATCATTGTTGAAGCTAAA
AAACTAAATCGTTCAAATTTAGAAATGTTCCCTGTATTAAGTGCTGTATC
TAAACCTAAGGTATCTTCTCAGAAAGTGGTTCGCAGTTACAAAGAAGTAG
CTGCTTCATTGAAACGCAGACAACCTAAAAACGAAATTTCTCAAACTAAT
AAACATGTAAAAGTTGAAACTGAAATCACAACTATAAATAAACCAAAAGT
ATTGACATCTACTACAGAAATTGAGACACCTGTACAAGTTATAACAACTC
CTAAAATAGTATTAAAGAAAAGCCGTAAACCCCCAAGTTCATTGCCTCAT
TTAGTTAAAAATGAGGCAAAGAAAATTCCAAAAGAAATTGTTCCTAAAAT
GCGCGCTCAAGAGCGTTTAGTTAGATTAAGTTCCTTCAGTGTCATTCAAT
CAACAGATTTGCCAAATAATGAAAAATCATCAAAGAAAAATGTTGCTAAA
TTTGTTAATGGAGAACAATATGCCATTAACGATGAAAATATAAAATCTAC
TGTAGTAGTACCTAAACCTGTTGTTATTGGTTGTGAAGAAAAGAAAAAAA
GGAAAGTACAAAGAAAAAATATTATTAAACCAACTAAAAATGAAAAGGTT
GAAGAATCTACAACCAATCTGGCAATTACCTGCAATCCTCAAACAGTAGT
AGAACGACCTAAGTGTGAAATTACAGAAAAAAGGGATCAAAAATCTCCAG
TGAAGAAAGAAAATATCATAATACCATTAACAACATCTATAGCATTGAAC
TCTCTAGTCTCACGTCCCGAAGAAAATGCTTATAAACATGAGTTACTTAA
AAGAGAGCTAGCAATGATTGCTGGCACAACTAAAGCTCAAAAATTACAAG
CTCATAGAGAGACACGGATTTTATGTCGCAATCAACTGGCACACATCAAT
CGTGTGAATTTAATGCTAAGTGCCAGTAATAAAAGACTGAGGAGGGCCGA
TAAGAATATGCGACCATCGGGTGCTAACAACAATCGCAAATGCTGTTAA back to top
Synonyms
The feature 'DV3000102-RA' has the following synonyms
| Synonym |
|---|
| augustus_masked-scaffold54-processed-gene-12.16-mRNA-1 |
|