DV3002354-RA (mRNA) Daktulosphaira vitifoliae

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	DV3002354-RA
Unique Name	DV3002354-RA
Type	mRNA
Organism	Daktulosphaira vitifoliae (dvitifoliae)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
DV3002354	DV3002354	Daktulosphaira vitifoliae	gene	scaffold1 529017..532751 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
DV3002354-RA	DV3002354-PA	Daktulosphaira vitifoliae	polypeptide	scaffold1 529503..532032 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
DV3002354-RA-exon	DV3002354-RA-exon-1	Daktulosphaira vitifoliae	exon	scaffold1 529017..529507 +
DV3002354-RA-exon	DV3002354-RA-exon-2	Daktulosphaira vitifoliae	exon	scaffold1 530645..530805 +
DV3002354-RA-exon	DV3002354-RA-exon-3	Daktulosphaira vitifoliae	exon	scaffold1 530874..530970 +
DV3002354-RA-exon	DV3002354-RA-exon-4	Daktulosphaira vitifoliae	exon	scaffold1 531036..531160 +
DV3002354-RA-exon	DV3002354-RA-exon-5	Daktulosphaira vitifoliae	exon	scaffold1 531632..532751 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
DV3002354-RA-five_prime_UTR	DV3002354-RA-five_prime_UTR-6	Daktulosphaira vitifoliae	five_prime_UTR	scaffold1 529017..529502 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
DV3002354-RA-CDS	DV3002354-RA-CDS-1	Daktulosphaira vitifoliae	CDS	scaffold1 529503..529507 +
DV3002354-RA-CDS	DV3002354-RA-CDS-2	Daktulosphaira vitifoliae	CDS	scaffold1 530645..530805 +
DV3002354-RA-CDS	DV3002354-RA-CDS-3	Daktulosphaira vitifoliae	CDS	scaffold1 530874..530970 +
DV3002354-RA-CDS	DV3002354-RA-CDS-4	Daktulosphaira vitifoliae	CDS	scaffold1 531036..531160 +
DV3002354-RA-CDS	DV3002354-RA-CDS-5	Daktulosphaira vitifoliae	CDS	scaffold1 531632..532032 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
DV3002354-RA-three_prime_UTR	DV3002354-RA-three_prime_UTR-12	Daktulosphaira vitifoliae	three_prime_UTR	scaffold1 532033..532751 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at scaffold1:529017..532751+
coding sequence from alignment at scaffold1:529017..532751+

spliced messenger RNA

>DV3002354-RA ID=DV3002354-RA|Name=DV3002354-RA|organism=Daktulosphaira vitifoliae|type=mRNA|length=1994bp|location=Sequence derived from alignment at scaffold1:529017..532751+ (Daktulosphaira vitifoliae)|Notes=Excludes all bases but those of type(s): exon.  
CTGATATCAGAATAATTGATAATGTCATGATAGTATAAACTTTTTCTCTG
TCCTTTCTTATAGATTGTACGTTTTCATTCCCACCAGTATATTTATGTAT
TGTAGTTGTTGTTTTATAGATATATTATTGTTCTGCGTATGAGACAAATG
AAAATGTGTACGCGTTAATATCATTATTGACGTCATATTTATTAACAGTC
TATCGGACATCGTTTAAAGACTATCAGAATTTTATTTCACCTTAACTTAC
GATTTATTTTGTTCTATAACATTTAAACGCGAAAACATCAATAGAATGGC
AATATGACGTCTTCTATTGTTTCGCTTAATTTTCAGTAATTGTAACAAAA
CTTTTACATGATTGTTATTATTCCTTTTCATTAATATAATTACGCAAAAA
CGTATTTATATTGAATGGTTGGCGAATAAAAATCTGACAAACTGGATAAG
CTACCTGAATATCTCCGCGATACCGTGGATTGGTTTATGGGAAAAGGCCG
TAAGTCTAAAGATAAAGAATTATTGTGTAATGATGACAACAAATTATATT
TAGATGAATCTGTATTAGAAAAAAAATTACCTGATATTGATCTTAGAATA
TTAGTTGATATACCTAATGGTATTGATTACAATGAGTGGCTTGCGTCACA
TACTATTTCAATATTTGATAATGTCAACTTAATTTACGGAGCTATATCAG
AATTTTGTACAATATCTGGTTGTCCAGACATGATAGGCCCAGGTTATAGA
ACCTATTTATGGTTTGATGAAAAAGGCAAAAAGTCTCGAGTTGCTGCTCC
CTTATATATAGATTATGTTATGACTTATATTCAAAAAACTATCAATGATG
AAACAATATTTCCGACAAAATATGCAAATGACTTTCCTGTTGGATTTGAA
GTAGTTGTACGAAAAATTTTTCGATTGTTGTTTCATGTGTTAGCTCACTT
ATACCATAGTCATTTTCGTGAATTAGTGTTATTAAATTTGCATTCTCATC
TAAATTGTGTCTTTTCTCATTTATCTGTATTTAACCACAGATATCAGTTA
ATTGAATTACGTGAAACTGAAATACTTCAAGATCTTGTTCAAGCTTTAAA
AATTTTAGGAAATAATGAAGAATGTACTAATATTAACAATGATGATGTTA
ATGCATTATTTAAAGGTGTTGTGAACAAAGAACCAACCGTATCATACGCT
GATCAACCTTTAAATATTTTTCCGAACTCGCCCTCCTCTACACATACTTT
AGCTACTCAGATTAGTAATTTCTAGTCTTGTAACACTTTATAATACATTT
ATTTATTTTTTCTGTAAATTAATTTTTTATTAAATTATTTTAAGTTAGAA
AAGATAATGATTATATAGTTTTGAGCTATAACAGTACCATTATATATATT
GAGCTTCTATTATTTTTAGAGTTAAATATTGAGGTAGTAAATTTCTTTAC
TATCAGTATTTTCAAATGTTTTTACTGTGTTTAACATTAAAAAATTTAGA
AAAAGAAATTGGAAATGTTTCATTTAAAACTGTCTCCATAATGTATCTCA
TTCATCCATGTTCCTGTTTAAGAGTATATTGTAACATAAGTTAATACAAC
ATAAACATATAATTTTAGTATAACAAAATAGTGTTAACCCTCCACATTAC
TTAACAACTTAAAATATTTCATTTTATTTCACTTCTTATAAATGTATGGG
TATTAATATTCTTTAGAAAATAATTTTCAGTACCATCTCAAATCATGAAA
ACTTAAAACTATTATTTGAATACATGACTAAACTAAATTATTCTTTAAAA
ATGCTTTGCTTATTTCTGTTATTTTCCAATACATTACAATATGTAATAAT
AAATTTTCCTAATTATAACTCTGTGGTTTAGTACAAAAGGCCTATTGTTG
TAACATTTATTTCACTATTTTTTTTTTTATTTTTTATTATCAAAAAATAA
TAGAAAATATCAGTGTTCAGTAAGTAAGGAAACGGGTTTCTATT

protein sequence of DV3002354-RA

>DV3002354-PA ID=DV3002354-PA|Name=DV3002354-RA|organism=Daktulosphaira vitifoliae|type=polypeptide|length=263bp
MGKGRKSKDKELLCNDDNKLYLDESVLEKKLPDIDLRILVDIPNGIDYNE
WLASHTISIFDNVNLIYGAISEFCTISGCPDMIGPGYRTYLWFDEKGKKS
RVAAPLYIDYVMTYIQKTINDETIFPTKYANDFPVGFEVVVRKIFRLLFH
VLAHLYHSHFRELVLLNLHSHLNCVFSHLSVFNHRYQLIELRETEILQDL
VQALKILGNNEECTNINNDDVNALFKGVVNKEPTVSYADQPLNIFPNSPS
STHTLATQISNF.

mRNA from alignment at scaffold1:529017..532751+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>DV3002354-RA ID=DV3002354-RA|Name=DV3002354-RA|organism=Daktulosphaira vitifoliae|type=mRNA|length=3735bp|location=Sequence derived from alignment at scaffold1:529017..532751+ (Daktulosphaira vitifoliae)
CTGATATCAGAATAATTGATAATGTCATGATAGTATAAACTTTTTCTCTG
TCCTTTCTTATAGATTGTACGTTTTCATTCCCACCAGTATATTTATGTAT
TGTAGTTGTTGTTTTATAGATATATTATTGTTCTGCGTATGAGACAAATG
AAAATGTGTACGCGTTAATATCATTATTGACGTCATATTTATTAACAGTC
TATCGGACATCGTTTAAAGACTATCAGAATTTTATTTCACCTTAACTTAC
GATTTATTTTGTTCTATAACATTTAAACGCGAAAACATCAATAGAATGGC
AATATGACGTCTTCTATTGTTTCGCTTAATTTTCAGTAATTGTAACAAAA
CTTTTACATGATTGTTATTATTCCTTTTCATTAATATAATTACGCAAAAA
CGTATTTATATTGAATGGTTGGCGAATAAAAATCTGACAAACTGGATAAG
CTACCTGAATATCTCCGCGATACCGTGGATTGGTTTATGGGGTGAGTAAT
TTATTTGGACATTTAAAAAAAATCGAAATAAATTTACTGTGATGAAAATT
TTCCAACATTAAAGGGACAAATTCCGTTTATATTAAAGTTTAAAGTTCAA
GAATTGTTTTGTAAATATTTATTTATTTATTTTAACAATTAATAAAAGAC
ATTCTACTGCCATATTTTGAAATAATACAAAATATTCTAACTTAAATATA
ATTGAAATTCTTCCTCTCATATTATTTAATAAAAAACTACTTGTATTATG
ACCTTACAAGCAAATCTCTCACTATGAAATTTAACGAAATACCTATAAAT
AGATTTTGCATATAATTGTCATTTTTACATTAATTTATTTTGTTTTAAAA
ATTTATCAAACAAAAGCTTGTGTCAATGAGAAATATAATATCCAGTGCAT
ATTGCCACTAGTGTAAAATACTTGGTTACAAATTGCTTTGCTTTCTGTGT
AAAGGATTATTTCAACAAAATGTCAATACTTCAACTGTTTTAGAACTCAA
AATAATAATTTATTCCCAACTGCAAAACAGAGAAACAGTCTTAAATAAGT
GTTATGAACTTAAAACATAGCAATTAACATAGGTTATAAGAGTTTTATTA
AGTTTTTCCAAAAACATAACAACCAATTACTCGATTTTGAAAATCTAAAA
ATTAATGTATTAATTAAATTTAAATTAATTTTAAAAATGATAAAAAGGTT
TTTGAAGTAAATTTTTTTATCAGTTAATCTTTAATAATAAAGAATAAATT
TTCATCTTTGGTAATATATTCATTTAATCTTAGATTCTTATAGTGTATTA
TATCTAATAATATACTTAAAATAAAATTTTAGCCTAATTTAATTATTTAT
TCATTTAAATTACTAGTTGTCATTAACTTTCCTAAACTAAAAATAATTAT
GAACTAATGATAATGGTCAATTAATGGCTGTAACCTATTAAATTTCCTAA
CTACTGCTTTTATGTTTTTCCATCAGAATAATAGAATAGTTACTCGAATA
TCATGATAAAAATAATGCTTTAAGATTAGTAAAATGTTATTTTAAAAACA
ATCACAATTGTATGATATACAGGTCTTATACCTAATAAAAACTTTGTTAT
TTTAACTTACAAAATATATTATTTTCAGAAAAGGCCGTAAGTCTAAAGAT
AAAGAATTATTGTGTAATGATGACAACAAATTATATTTAGATGAATCTGT
ATTAGAAAAAAAATTACCTGATATTGATCTTAGAATATTAGTTGATATAC
CTAATGGTATTGATTACAATGAGTGGCTTGCGTCACATAGTATGTATTTA
TTCTTAATTAAAAATAATTTTTTTTATGTAATATTCTATACATTTGTTTT
ATTGTAGCTATTTCAATATTTGATAATGTCAACTTAATTTACGGAGCTAT
ATCAGAATTTTGTACAATATCTGGTTGTCCAGACATGATAGGCCCAGGTT
ATAGGTACAATATAATATTTCTCGTTAGTTTATTAACTATATTTTATTTG
ATATAGTTATTTTTTCTAGAACCTATTTATGGTTTGATGAAAAAGGCAAA
AAGTCTCGAGTTGCTGCTCCCTTATATATAGATTATGTTATGACTTATAT
TCAAAAAACTATCAATGATGAAACAATATTTCCGACAAAATATGGTAAGT
TTTTTAAATTTCATAAAACATGATTATTTAAGCAAATTAAGAATATTGAT
AAATATGCTCCTGAATAGTAACAATAAGTATATCAAATGTAGATATGTCC
ATCCCAAAGAAATGTCTCAGTAGTTTCAGAGAAGCGCTTATATAATGCCA
AGAAACAAAATAAGAGCATATATACAATAAATTTTAATTAGTTAATATTC
TGAATCATAATCATATTTCAGTTAAACATATTGTAGATAGTAAAAGATAT
CTTAAATTCAAAATTTATATTAAATTTATTATAATTTATTATTAAAATAA
AAAAGTGTTACCCCTTAAATGTATTATATTAAATATTTTTCATGTTAAAA
AATTTTTTTACTTAAAATATCATCTTGATGTTAACTATCTATTCCTTTTT
GTTTTAATTGCAAAATATTTCATATATCAATATAAAAGTTTTAAATATTT
GTTTTTTTTTTTTAGCAAATGACTTTCCTGTTGGATTTGAAGTAGTTGTA
CGAAAAATTTTTCGATTGTTGTTTCATGTGTTAGCTCACTTATACCATAG
TCATTTTCGTGAATTAGTGTTATTAAATTTGCATTCTCATCTAAATTGTG
TCTTTTCTCATTTATCTGTATTTAACCACAGATATCAGTTAATTGAATTA
CGTGAAACTGAAATACTTCAAGATCTTGTTCAAGCTTTAAAAATTTTAGG
AAATAATGAAGAATGTACTAATATTAACAATGATGATGTTAATGCATTAT
TTAAAGGTGTTGTGAACAAAGAACCAACCGTATCATACGCTGATCAACCT
TTAAATATTTTTCCGAACTCGCCCTCCTCTACACATACTTTAGCTACTCA
GATTAGTAATTTCTAGTCTTGTAACACTTTATAATACATTTATTTATTTT
TTCTGTAAATTAATTTTTTATTAAATTATTTTAAGTTAGAAAAGATAATG
ATTATATAGTTTTGAGCTATAACAGTACCATTATATATATTGAGCTTCTA
TTATTTTTAGAGTTAAATATTGAGGTAGTAAATTTCTTTACTATCAGTAT
TTTCAAATGTTTTTACTGTGTTTAACATTAAAAAATTTAGAAAAAGAAAT
TGGAAATGTTTCATTTAAAACTGTCTCCATAATGTATCTCATTCATCCAT
GTTCCTGTTTAAGAGTATATTGTAACATAAGTTAATACAACATAAACATA
TAATTTTAGTATAACAAAATAGTGTTAACCCTCCACATTACTTAACAACT
TAAAATATTTCATTTTATTTCACTTCTTATAAATGTATGGGTATTAATAT
TCTTTAGAAAATAATTTTCAGTACCATCTCAAATCATGAAAACTTAAAAC
TATTATTTGAATACATGACTAAACTAAATTATTCTTTAAAAATGCTTTGC
TTATTTCTGTTATTTTCCAATACATTACAATATGTAATAATAAATTTTCC
TAATTATAACTCTGTGGTTTAGTACAAAAGGCCTATTGTTGTAACATTTA
TTTCACTATTTTTTTTTTTATTTTTTATTATCAAAAAATAATAGAAAATA
TCAGTGTTCAGTAAGTAAGGAAACGGGTTTCTATT

Coding sequence (CDS) from alignment at scaffold1:529017..532751+

>DV3002354-RA ID=DV3002354-RA|Name=DV3002354-RA|organism=Daktulosphaira vitifoliae|type=CDS|length=789bp|location=Sequence derived from alignment at scaffold1:529017..532751+ (Daktulosphaira vitifoliae)
ATGGGAAAAGGCCGTAAGTCTAAAGATAAAGAATTATTGTGTAATGATGA
CAACAAATTATATTTAGATGAATCTGTATTAGAAAAAAAATTACCTGATA
TTGATCTTAGAATATTAGTTGATATACCTAATGGTATTGATTACAATGAG
TGGCTTGCGTCACATACTATTTCAATATTTGATAATGTCAACTTAATTTA
CGGAGCTATATCAGAATTTTGTACAATATCTGGTTGTCCAGACATGATAG
GCCCAGGTTATAGAACCTATTTATGGTTTGATGAAAAAGGCAAAAAGTCT
CGAGTTGCTGCTCCCTTATATATAGATTATGTTATGACTTATATTCAAAA
AACTATCAATGATGAAACAATATTTCCGACAAAATATGCAAATGACTTTC
CTGTTGGATTTGAAGTAGTTGTACGAAAAATTTTTCGATTGTTGTTTCAT
GTGTTAGCTCACTTATACCATAGTCATTTTCGTGAATTAGTGTTATTAAA
TTTGCATTCTCATCTAAATTGTGTCTTTTCTCATTTATCTGTATTTAACC
ACAGATATCAGTTAATTGAATTACGTGAAACTGAAATACTTCAAGATCTT
GTTCAAGCTTTAAAAATTTTAGGAAATAATGAAGAATGTACTAATATTAA
CAATGATGATGTTAATGCATTATTTAAAGGTGTTGTGAACAAAGAACCAA
CCGTATCATACGCTGATCAACCTTTAAATATTTTTCCGAACTCGCCCTCC
TCTACACATACTTTAGCTACTCAGATTAGTAATTTCTAG