Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
AED | 0.01 |
QI | 175|0.33|0.75|0.75|1|1|4|410|842 |
eAED | 0.01 |
Full name | DV3002359 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
DV3002359-RA-five_prime_UTR | DV3002359-RA-five_prime_UTR-5 | Daktulosphaira vitifoliae | five_prime_UTR | scaffold1 611022..611196 + |
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
DV3002359-RA-three_prime_UTR | DV3002359-RA-three_prime_UTR-10 | Daktulosphaira vitifoliae | three_prime_UTR | scaffold1 614553..614962 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >DV3002359-RA ID=DV3002359-RA|Name=DV3002359-RA|organism=Daktulosphaira vitifoliae|type=mRNA|length=3114bp|location=Sequence derived from alignment at scaffold1:611022..614962+ (Daktulosphaira vitifoliae)|Notes=Excludes all bases but those of type(s): exon.
GTCTGGTTTAATATTATCTGTGGTAACACTGTTAAAGATTTTGTTACGTC CGGTCACTATAACGTTTTTTTATTTACTTGATAGAGGGTTAAAATAATGT TTGTTAAATACCATCTAGTTTTTATTTTTAAATTCAACTATATTTTTTAA TTAAGTTTATTAGTTTTCTATTATAATGTCACGCAACAATTTTGATTCAA CAACTTCTACTTTTAAGGCACCATTAGCTCCAATAAGAATGCCTCAATCT ACCCAAGCACCAGAGGCACTGCTTTTCAATGATATAATGGAGGATAAAAC TACAATTTTACGAAATACAATGGCTGAATTTTTACAAGTACAGCCATATC GTAAATTTGAATTTGAATTTTCAAATTTTCTCAACCGGGTAAAAGGTATG ATAGAAGAAGGACATCGTAATGGTGCTAATGCTTCCCGTCTAACAAATAT TTCACATATTGCTCCAATGTATAACAGACCTTCAATGAGTTTTAATTGTA GACCTCCATCTACAATGTCAATGTTCCCTTCAAATCAGAGTTCTTATCAG ATATCCGAAACAAATTACCAACAACGCATTCAACCTTTAAATCCATTTAA ACCTCCATCAAGTGTTTCTATGTTACAACCCAAGTTATTATCTCACAATG ATGATGATATGATTAACCATGAACATAGTTGTTCTCCCAAATCATGTACT ACAATTATTGAAATGGGACAACAAGCTAATAATGTAACTAAAAGAACTTG TGATGATTTTGAAAGCCATGAAGATCATGTACCAGAAAAACATCAGGATA CTGCTATTAACAAATACTCTGATATGACAATAATTGAGAATGGTTCATTT ACAGAAAATAGTAATGTAAATAACTCAAATCGATGCAAGTTGCTTGAATC TGATTTAGAGAATGTTGGATTCAAAATCGTTGTTGGACTACCAAATAAAA GTACTACATTAAGTAAAAAGGATCATTCAAGTCGATTAGATATTGTTCCC CAAAGTCAACTTAATAACATCTCTGAAACTCTTGAAAAATATTTGTCTAA GTGGTCTATTAATGTAAAAGAAATGAAATCGCAAAAAAAAACTAAAGTTG CAATTGTATTATCTGGTACTCTCTTGGCTCAAGATAAAGTTACAGTTTTA GAAAAAAATCATGATGCAGGTATCTTAGAGTGTAGAAAAGAAAAAAATCT AATAAAAACTAAAAATGGACTGTATCGTCTCCTTGGAAATATAATTAGTG GTTATCCAAAAAATGTTTTTACTATTTGCCTTGAAACTGGTGGTATTCCA TTAAGATGGAGGATACTTTTATGCACACATGAAAATGTGAAAAGAGAATT AAAAAAACCACCTTTAAACTTTTCATTAGAATCTCCAGCGGGACCAATGA AATTATCTAAACCTGCTCTTAATTTAGATGTCAGTATGACAAGGAAAGGT ACATCTTATGGCACAAGTAAAGTTGTAGTCAACAAAGATATTAGTAACAA AAGAAAATTTCCTGAATGTGATACTGCTGCTGAGAATAATAAAAGTAAAC ATCGCAAATATCAAGCACCCTTGTTAGCTTCGACACCAAAAAGGCCAAGA TTACATCCACAATGCGCAACTCCAAGTGAAATTTTAAAAAGTAAATTATG TCGTAAGCTCAATGTAAATCATGAAATGTCTAAACATAAAAATTGTAAAA CTTTGAATACAGCAAATGATTCCATTGTGGTAAAGAAAAGACAATCGTAT ACTAAAGATGAAAAAGCTAAAAACATTCAGTTTTTAAGACCACCAACACC TATGACTAATAATAACGCTAATGGTTCTAAGTCGGCCTCATCTGAAAAAT CTGCCAATCATACAAAAAGTTCTAGAAATGGCTCTGTAAATTCCACAAAC ATAAATAGCATTTCTTGTAGTAAACAATCAAAAAGTAGTTTGATAGAAAA TTCTGGTGTACATGATGTAACAGACAAAATTAATTCATCAAAAGCAAAAC ATAAGACTTCTGTTATAAATTCAACAGCTAGCACATTAGAACATTCAAAA CAAATAAAAACTCAAAATTCAATACTGAAGAAAAGGTCAAAATCAAAAAA TGAAAATATCATAGATAGTAAATCTAAAATTATTCTAAGTGATGGTGGGA AATCAAAAATAACTAAACGGAAACCTAAAGAAGATTCGAAGCGAATATAT TCAAAAGTGCTTGATGAAATACCAAAAAATATTTGTACAAAAGAAAAAAA AAAGGGTTTTTCAGAAGAAACACCTACCAAGAGTGCATCAGGACAAGGCT TATTTGACAATTTTGAAGCAGATGACTATGGTGATATTAGTGATTTTAAT GTAATGCAATCACCTGGAAAGTTAAGCATGATTTCACGGACAGACAAGTC CAGAAGTGAAACACCACCTTTGTTTAATCAACAATGGATGGGAACTTCTG GTAAATCTATAGTTATAAGTGAACCACCTACACCCCTTAGTAAATCAGCA GAAGCTAAAGCATTACGACGAGTTAAAAGACCTGAAATAACAGAAAAAGA AGAATTAAAAGAAATGAAACGATATAAATTATCTAAAAAAAAACAAGGAG ATAAGGAAAAAAATTATGATGCTGTAAACAAATTGATTAATGACATGTTA GTTTATGGTGAGCAATTGAGTTTTGATGATGAAATGATTTCATATTCAAG TTAATTATATCTCATTATGTATTTTTAACTATGATAACTATTTTTATAAT TAATTTCCTTTATTTTATTATTATACGTTTACCTCATTTATAGAATACCA GTACGAATTTTGTGTATTTATAACCTTCATAACTCTTTGTGAATTTATAT TTATATTTTTTGGGGTTATAATAATTTAGTTCAAAAAATTTTGAACTCTG ACATAAATCAATGTTTAACTAGTTATTCTTGATATAAAGTTGAAAATTAG TCAACGATTTCTGTATTTAATTCTTCAAATTAACTAAATTACATATTATA CTGATATAAGACTTTAAAATATTAAAAACAAACATCTTATAGATTGTATT ATCTGCTCTAATTATATTTTTTAATGACTATTAATTTATACAGTTTTCCC TGTAAAAAGTGAAA back to topprotein sequence of DV3002359-RA >DV3002359-PA ID=DV3002359-PA|Name=DV3002359-RA|organism=Daktulosphaira vitifoliae|type=polypeptide|length=843bp
MSRNNFDSTTSTFKAPLAPIRMPQSTQAPEALLFNDIMEDKTTILRNTMA EFLQVQPYRKFEFEFSNFLNRVKGMIEEGHRNGANASRLTNISHIAPMYN RPSMSFNCRPPSTMSMFPSNQSSYQISETNYQQRIQPLNPFKPPSSVSML QPKLLSHNDDDMINHEHSCSPKSCTTIIEMGQQANNVTKRTCDDFESHED HVPEKHQDTAINKYSDMTIIENGSFTENSNVNNSNRCKLLESDLENVGFK IVVGLPNKSTTLSKKDHSSRLDIVPQSQLNNISETLEKYLSKWSINVKEM KSQKKTKVAIVLSGTLLAQDKVTVLEKNHDAGILECRKEKNLIKTKNGLY RLLGNIISGYPKNVFTICLETGGIPLRWRILLCTHENVKRELKKPPLNFS LESPAGPMKLSKPALNLDVSMTRKGTSYGTSKVVVNKDISNKRKFPECDT AAENNKSKHRKYQAPLLASTPKRPRLHPQCATPSEILKSKLCRKLNVNHE MSKHKNCKTLNTANDSIVVKKRQSYTKDEKAKNIQFLRPPTPMTNNNANG SKSASSEKSANHTKSSRNGSVNSTNINSISCSKQSKSSLIENSGVHDVTD KINSSKAKHKTSVINSTASTLEHSKQIKTQNSILKKRSKSKNENIIDSKS KIILSDGGKSKITKRKPKEDSKRIYSKVLDEIPKNICTKEKKKGFSEETP TKSASGQGLFDNFEADDYGDISDFNVMQSPGKLSMISRTDKSRSETPPLF NQQWMGTSGKSIVISEPPTPLSKSAEAKALRRVKRPEITEKEELKEMKRY KLSKKKQGDKEKNYDAVNKLINDMLVYGEQLSFDDEMISYSS. back to topmRNA from alignment at scaffold1:611022..614962+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >DV3002359-RA ID=DV3002359-RA|Name=DV3002359-RA|organism=Daktulosphaira vitifoliae|type=mRNA|length=3941bp|location=Sequence derived from alignment at scaffold1:611022..614962+ (Daktulosphaira vitifoliae) GTCTGGTTTAATATTATCTGTGGTAACACTGTTAAAGATTTTGTTACGTC
CGGTCACTATAACGTTTTTTTATTTACTTGATAGAGGGTTAAAATAATGT
TTGTTAAATACCATCTAGTTTTTATTTTTAAATTCAACTATATTTTTTAA
TTAAGTTTATTAGTTTTCTATTATAATGTCACGCAACAATTTTGATTCAA
CAACTTCTACTTTTAAGGCACCATTAGCTCCAATAAGAATGCCTCAATCT
ACCCAAGCACCAGAGGCACTGCTTTTCAATGATATAATGGAGGATAAAAC
TACAATTTTACGAAATACAATGGCTGAATTTTTACAAGTACAGCCATATC
GTAAATTTGAATTTGAATTTTCAAATTTTCTCAACCGGGTAAAAGGTATG
ATAGAAGAAGGACATCGTAATGGTGCTAATGCTTCCCGTCTAACAAATAT
TTCACATATTGCTCCAATGTATAACAGACCTTCAATGAGTTTTAATTGTA
GACCTCCATCTACAATGTCAATGTTCCCTTCAAATCAGAGTTCTTATCAG
ATATCCGAAACAAATTACCAACAACGCATTCAACCTTTAAATCCATTTAA
ACCTCCATCAAGTGTTTCTATGTTACAACCCAAGTTATTATCTCACAATG
ATGATGATATGATTAACCATGAACATAGTTGTTCTCCCAAATCATGTACT
ACAATTATTGAAATGGGACAACAAGCTAATAATGTAACTAAAAGAACTTG
TGATGATTTTGAAAGCCATGAAGATCATGTACCAGAAAAACATCAGGATA
CTGCTATTAACAAATACTCTGATATGACAATAATTGAGAATGGTTCATTT
ACAGAAAATAGTAATGTAAATAACTCAAATCGATGCAAGTTGCTTGAATC
TGATTTAGAGAATGTTGGATTCAAAATCGTTGTTGGACTACCAAATAAAA
GTACTACATTAAGTAAAAAGGATCATTCAAGTCGATTAGATATTGTTCCC
CAAAGTCAACTTAATAACATCTCTGAAACTCTTGAAAAATATTTGTCTAA
GTGGTCTATTAATGTAAAAGAAATGAAATCGCAAAAAAAAACTAAAGTTG
CAATTGTATTATCTGGTAAATTATTTTATTTATTAAAAATAGATAAAATG
GAGTAATATAATATAATAAATAAAATAGATGGTCAATCATCTATTTTATT
AACATATTTTGCTGTTTATACTGCAACAGTGTGGTGTATCTCAAACTTCT
AGGTTTTCAGAATAATCAAAAAATAAGTTTGAATGATATGTTTGTTTTAA
TATAAGAAATATTTTTATTCTCATAAATATCATTAAAACTATAAGTCTAA
AACTATAATTATAAGTCTCACAAACATTTTTGTAGAAAAAAAATTTTTCA
GAAATACTTCTTTTATTATTATTGATAAAAATCTTATTTTGTCAAATTTG
AGATGTGTATTGTTGCAGTATAAATATATTAGCTATTAATTTTTAATATC
TTTAAATAATTTTAGGTACTCTCTTGGCTCAAGATAAAGTTACAGTTTTA
GAAAAAAATCATGATGCAGGTATCTTAGAGTGTAGAAAAGAAAAAAATCT
AATAAAAACTAAAAATGGACTGTATCGTCTCCTTGGAAATATAATTAGTG
GTTATCCAAAAAATGTTTTTACTATTTGCCTTGAAACTGGTGGTATTCCA
TTAAGATGGAGGATACTTTTATGCACACATGAAAATGTGAAAAGAGAATT
AAAAAAACCACCTTTAAACTTTTCATTAGAATCTCCAGCGGGACCAATGA
AATTATCTAAACCTGCTCTTAATTTAGATGTCAGTATGACAAGGAAAGGT
ACATCTTATGGCACAAGTAAAGTTGTAGTCAACAAAGATATTAGTAACAA
AAGAAAATTTCCTGAATGTGATACTGCTGCTGAGAATAATAAAAGTAAAC
ATCGCAAATATCAAGCACCCTTGTTAGCTTCGACACCAAAAAGGCCAAGA
TTACATCCACAATGCGCAACTCCAAGTGAAATTTTAAAAAGTAAATTATG
TCGTAAGCTCAATGTAAATCATGAAATGTCTAAACATAAAAATTGTAAAA
CTTTGAATACAGCAAATGATTCCATTGTGGTAAAGAAAAGACAATCGTAT
ACTAAAGATGAAGTAAGAATATTTAAAAATAGTTTTTTTTTTTTTAATTT
TTTTTAATTTTTTAGAAAGCTAAAGTAATATTTTGGCAAATATTGACAGA
AGAATGTCATTTTATTTAATTTTAAAAATAAAAGTTATTTTTAAAAACTT
ATTAAATAGTTTAATTCAGAAATTTTCTGTGTTAACATATACATTATAAT
TAAAATAATAATTAAATTTATTGATGAACATTTTTATTGTTAAACTAGAA
TCAAATTATTATACTGTCAGTTAAGGAAAATCTTTTTGTCATTAGTCTAA
TATACCCTAAATTATTCCAGAAAATTTGATTTCTTTATAGTAAAAGTTAA
ACTTTTTTAAATTTTTTTAAATATCTTAAAAAGTTATAAAAATTAAAAAA
TTGATATCTACTTTATACTTAACATTCATATATATATATTTTTTTTAGAA
CATTCAGTTTTTAAGACCACCAACACCTATGACTAATAATAACGCTAATG
GTTCTAAGTCGGCCTCATCTGAAAAATCTGCCAATCATACAAAAAGTTCT
AGAAATGGCTCTGTAAATTCCACAAACATAAATAGCATTTCTTGTAGTAA
ACAATCAAAAAGTAGTTTGATAGAAAATTCTGGTGTACATGATGTAACAG
ACAAAATTAATTCATCAAAAGCAAAACATAAGACTTCTGTTATAAATTCA
ACAGCTAGCACATTAGAACATTCAAAACAAATAAAAACTCAAAATTCAAT
ACTGAAGAAAAGGTCAAAATCAAAAAATGAAAATATCATAGATAGTAAAT
CTAAAATTATTCTAAGTGATGGTGGGAAATCAAAAATAACTAAACGGAAA
CCTAAAGAAGATTCGAAGCGAATATATTCAAAAGTGCTTGATGAAATACC
AAAAAATATTTGTACAAAAGAAAAAAAAAAGGGTTTTTCAGAAGAAACAC
CTACCAAGAGTGCATCAGGACAAGGCTTATTTGACAATTTTGAAGCAGAT
GACTATGGTGATATTAGTGATTTTAATGTAATGCAATCACCTGGAAAGTT
AAGCATGATTTCACGGACAGACAAGTCCAGAAGTGAAACACCACCTTTGT
TTAATCAACAATGGATGGGAACTTCTGGTAAATCTATAGTTATAAGTGAA
CCACCTACACCCCTTAGTAAATCAGCAGAAGCTAAAGCATTACGACGAGT
TAAAAGACCTGAAATAACAGAAAAAGAAGAATTAAAAGAAATGAAACGAT
ATAAATTATCTAAAAAAAAACAAGGAGATAAGGAAAAAAATTATGATGCT
GTAAACAAATTGATTAATGACATGTTAGTTTATGGTGAGCAATTGAGTTT
TGATGATGAAATGATTTCATATTCAAGTTAATTATATCTCATTATGTATT
TTTAACTATGATAACTATTTTTATAATTAATTTCCTTTATTTTATTATTA
TACGTTTACCTCATTTATAGAATACCAGTACGAATTTTGTGTATTTATAA
CCTTCATAACTCTTTGTGAATTTATATTTATATTTTTTGGGGTTATAATA
ATTTAGTTCAAAAAATTTTGAACTCTGACATAAATCAATGTTTAACTAGT
TATTCTTGATATAAAGTTGAAAATTAGTCAACGATTTCTGTATTTAATTC
TTCAAATTAACTAAATTACATATTATACTGATATAAGACTTTAAAATATT
AAAAACAAACATCTTATAGATTGTATTATCTGCTCTAATTATATTTTTTA
ATGACTATTAATTTATACAGTTTTCCCTGTAAAAAGTGAAA back to topCoding sequence (CDS) from alignment at scaffold1:611022..614962+ >DV3002359-RA ID=DV3002359-RA|Name=DV3002359-RA|organism=Daktulosphaira vitifoliae|type=CDS|length=2529bp|location=Sequence derived from alignment at scaffold1:611022..614962+ (Daktulosphaira vitifoliae) ATGTCACGCAACAATTTTGATTCAACAACTTCTACTTTTAAGGCACCATT AGCTCCAATAAGAATGCCTCAATCTACCCAAGCACCAGAGGCACTGCTTT TCAATGATATAATGGAGGATAAAACTACAATTTTACGAAATACAATGGCT GAATTTTTACAAGTACAGCCATATCGTAAATTTGAATTTGAATTTTCAAA TTTTCTCAACCGGGTAAAAGGTATGATAGAAGAAGGACATCGTAATGGTG CTAATGCTTCCCGTCTAACAAATATTTCACATATTGCTCCAATGTATAAC AGACCTTCAATGAGTTTTAATTGTAGACCTCCATCTACAATGTCAATGTT CCCTTCAAATCAGAGTTCTTATCAGATATCCGAAACAAATTACCAACAAC GCATTCAACCTTTAAATCCATTTAAACCTCCATCAAGTGTTTCTATGTTA CAACCCAAGTTATTATCTCACAATGATGATGATATGATTAACCATGAACA TAGTTGTTCTCCCAAATCATGTACTACAATTATTGAAATGGGACAACAAG CTAATAATGTAACTAAAAGAACTTGTGATGATTTTGAAAGCCATGAAGAT CATGTACCAGAAAAACATCAGGATACTGCTATTAACAAATACTCTGATAT GACAATAATTGAGAATGGTTCATTTACAGAAAATAGTAATGTAAATAACT CAAATCGATGCAAGTTGCTTGAATCTGATTTAGAGAATGTTGGATTCAAA ATCGTTGTTGGACTACCAAATAAAAGTACTACATTAAGTAAAAAGGATCA TTCAAGTCGATTAGATATTGTTCCCCAAAGTCAACTTAATAACATCTCTG AAACTCTTGAAAAATATTTGTCTAAGTGGTCTATTAATGTAAAAGAAATG AAATCGCAAAAAAAAACTAAAGTTGCAATTGTATTATCTGGTACTCTCTT GGCTCAAGATAAAGTTACAGTTTTAGAAAAAAATCATGATGCAGGTATCT TAGAGTGTAGAAAAGAAAAAAATCTAATAAAAACTAAAAATGGACTGTAT CGTCTCCTTGGAAATATAATTAGTGGTTATCCAAAAAATGTTTTTACTAT TTGCCTTGAAACTGGTGGTATTCCATTAAGATGGAGGATACTTTTATGCA CACATGAAAATGTGAAAAGAGAATTAAAAAAACCACCTTTAAACTTTTCA TTAGAATCTCCAGCGGGACCAATGAAATTATCTAAACCTGCTCTTAATTT AGATGTCAGTATGACAAGGAAAGGTACATCTTATGGCACAAGTAAAGTTG TAGTCAACAAAGATATTAGTAACAAAAGAAAATTTCCTGAATGTGATACT GCTGCTGAGAATAATAAAAGTAAACATCGCAAATATCAAGCACCCTTGTT AGCTTCGACACCAAAAAGGCCAAGATTACATCCACAATGCGCAACTCCAA GTGAAATTTTAAAAAGTAAATTATGTCGTAAGCTCAATGTAAATCATGAA ATGTCTAAACATAAAAATTGTAAAACTTTGAATACAGCAAATGATTCCAT TGTGGTAAAGAAAAGACAATCGTATACTAAAGATGAAAAAGCTAAAAACA TTCAGTTTTTAAGACCACCAACACCTATGACTAATAATAACGCTAATGGT TCTAAGTCGGCCTCATCTGAAAAATCTGCCAATCATACAAAAAGTTCTAG AAATGGCTCTGTAAATTCCACAAACATAAATAGCATTTCTTGTAGTAAAC AATCAAAAAGTAGTTTGATAGAAAATTCTGGTGTACATGATGTAACAGAC AAAATTAATTCATCAAAAGCAAAACATAAGACTTCTGTTATAAATTCAAC AGCTAGCACATTAGAACATTCAAAACAAATAAAAACTCAAAATTCAATAC TGAAGAAAAGGTCAAAATCAAAAAATGAAAATATCATAGATAGTAAATCT AAAATTATTCTAAGTGATGGTGGGAAATCAAAAATAACTAAACGGAAACC TAAAGAAGATTCGAAGCGAATATATTCAAAAGTGCTTGATGAAATACCAA AAAATATTTGTACAAAAGAAAAAAAAAAGGGTTTTTCAGAAGAAACACCT ACCAAGAGTGCATCAGGACAAGGCTTATTTGACAATTTTGAAGCAGATGA CTATGGTGATATTAGTGATTTTAATGTAATGCAATCACCTGGAAAGTTAA GCATGATTTCACGGACAGACAAGTCCAGAAGTGAAACACCACCTTTGTTT AATCAACAATGGATGGGAACTTCTGGTAAATCTATAGTTATAAGTGAACC ACCTACACCCCTTAGTAAATCAGCAGAAGCTAAAGCATTACGACGAGTTA AAAGACCTGAAATAACAGAAAAAGAAGAATTAAAAGAAATGAAACGATAT AAATTATCTAAAAAAAAACAAGGAGATAAGGAAAAAAATTATGATGCTGT AAACAAATTGATTAATGACATGTTAGTTTATGGTGAGCAATTGAGTTTTG ATGATGAAATGATTTCATATTCAAGTTAA back to top
Synonyms
The feature 'DV3002359-RA' has the following synonyms
Synonym |
maker-scaffold1-augustus-gene-6.105-mRNA-1 |
|